mRNA_H-elongata_contig56061.13040.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig56061.13040.1
Unique NamemRNA_H-elongata_contig56061.13040.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig56061.13040.1 vs. uniprot
Match: D7FW42_ECTSI (Small nuclear ribonucleoprotein Sm D2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FW42_ECTSI)

HSP 1 Score: 141 bits (355), Expect = 7.320e-42
Identity = 73/100 (73.00%), Postives = 81/100 (81.00%), Query Frame = 1 
Query:   13 QSVKNNTQVLINVRNNHKLLARVKAFDRHCNILFNSKMLCFIIAPVNAFFRVLTDVKEIWTEQPKTGKGKKKAKSVDKDRYISKMFLRGDSVVLVLRNPS 312
            QSVKNNTQVLINVRNNHKLLAR+KAFDRHCN+                   VLTDVKE+WTEQPKTGKG+KKAK+V+KDRY+SKMFLRGDSVVLVLRNP+
Sbjct:    2 QSVKNNTQVLINVRNNHKLLARIKAFDRHCNM-------------------VLTDVKEMWTEQPKTGKGQKKAKAVNKDRYVSKMFLRGDSVVLVLRNPT 82
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BLAST of mRNA_H-elongata_contig56061.13040.1 vs. uniprot
Match: A0A7S2XVF6_9STRA (Small nuclear ribonucleoprotein Sm D2 n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XVF6_9STRA)

HSP 1 Score: 132 bits (332), Expect = 5.090e-38
Identity = 70/102 (68.63%), Postives = 78/102 (76.47%), Query Frame = 1 
Query:    7 IWQSVKNNTQVLINVRNNHKLLARVKAFDRHCNILFNSKMLCFIIAPVNAFFRVLTDVKEIWTEQPKTGKGKKKAKSVDKDRYISKMFLRGDSVVLVLRNPS 312
            + QSVK NTQVLINVRNNHKLLARVKAFDRHCN+                   VL +VKE+WTE PKTGKGKKKAK V+KDRYISKMFLRGDSV+LVL+NP+
Sbjct:   26 LMQSVKQNTQVLINVRNNHKLLARVKAFDRHCNM-------------------VLENVKEMWTEVPKTGKGKKKAKPVNKDRYISKMFLRGDSVILVLKNPN 108
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BLAST of mRNA_H-elongata_contig56061.13040.1 vs. uniprot
Match: A0A6A4WKZ7_AMPAM (Small nuclear ribonucleoprotein Sm D2 n=5 Tax=Bilateria TaxID=33213 RepID=A0A6A4WKZ7_AMPAM)

HSP 1 Score: 129 bits (325), Expect = 8.240e-37
Identity = 70/99 (70.71%), Postives = 75/99 (75.76%), Query Frame = 1 
Query:   13 QSVKNNTQVLINVRNNHKLLARVKAFDRHCNILFNSKMLCFIIAPVNAFFRVLTDVKEIWTEQPKTGKGKKKAKSVDKDRYISKMFLRGDSVVLVLRNP 309
            QSVKNNTQVLIN RNN KLLARVKAFDRHCN+                   VL +VKE+WTE PKTGKGKKKAK V+KDRYISKMFLRGDSV+LVLRNP
Sbjct:   33 QSVKNNTQVLINCRNNKKLLARVKAFDRHCNM-------------------VLENVKEMWTELPKTGKGKKKAKPVNKDRYISKMFLRGDSVILVLRNP 112
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BLAST of mRNA_H-elongata_contig56061.13040.1 vs. uniprot
Match: A0A835ZMS4_9STRA (Small nuclear ribonucleoprotein Sm D2 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZMS4_9STRA)

HSP 1 Score: 129 bits (324), Expect = 8.410e-37
Identity = 67/102 (65.69%), Postives = 77/102 (75.49%), Query Frame = 1 
Query:    7 IWQSVKNNTQVLINVRNNHKLLARVKAFDRHCNILFNSKMLCFIIAPVNAFFRVLTDVKEIWTEQPKTGKGKKKAKSVDKDRYISKMFLRGDSVVLVLRNPS 312
            + QSVKNN QVLINVRNNHKLLARVKAFDRHCN+                   VLTDVKE+WT+ PK GKG+KKA  V+KDRY+SKMFLRGDSV+LVL+NP+
Sbjct:   26 LMQSVKNNNQVLINVRNNHKLLARVKAFDRHCNM-------------------VLTDVKEMWTDVPKKGKGQKKAHPVNKDRYVSKMFLRGDSVILVLKNPN 108
[Close]
BLAST of mRNA_H-elongata_contig56061.13040.1 vs. uniprot
Match: C1BS97_LEPSM (Small nuclear ribonucleoprotein Sm D2 n=8 Tax=Protostomia TaxID=33317 RepID=C1BS97_LEPSM)

HSP 1 Score: 128 bits (322), Expect = 2.090e-36
Identity = 69/99 (69.70%), Postives = 73/99 (73.74%), Query Frame = 1 
Query:   13 QSVKNNTQVLINVRNNHKLLARVKAFDRHCNILFNSKMLCFIIAPVNAFFRVLTDVKEIWTEQPKTGKGKKKAKSVDKDRYISKMFLRGDSVVLVLRNP 309
            QSVKNNTQVLIN RNN KLL RVKAFDRHCN+                   VL  VKE+WTE PKTGKGKKKAK V+KDRYISKMFLRGDSV+LVLRNP
Sbjct:   33 QSVKNNTQVLINCRNNKKLLGRVKAFDRHCNM-------------------VLESVKEMWTEMPKTGKGKKKAKPVNKDRYISKMFLRGDSVILVLRNP 112
[Close]
BLAST of mRNA_H-elongata_contig56061.13040.1 vs. uniprot
Match: A0A2T7P031_POMCA (Small nuclear ribonucleoprotein Sm D2 n=12 Tax=Mollusca TaxID=6447 RepID=A0A2T7P031_POMCA)

HSP 1 Score: 128 bits (322), Expect = 2.090e-36
Identity = 69/99 (69.70%), Postives = 75/99 (75.76%), Query Frame = 1 
Query:   13 QSVKNNTQVLINVRNNHKLLARVKAFDRHCNILFNSKMLCFIIAPVNAFFRVLTDVKEIWTEQPKTGKGKKKAKSVDKDRYISKMFLRGDSVVLVLRNP 309
            QSVKNNTQVLIN RNN KLLARVKAFDRHCN+                   VL +VKE+WTE PKTGKGKKK+K V+KDRYISKMFLRGDSV+LVLRNP
Sbjct:   31 QSVKNNTQVLINCRNNKKLLARVKAFDRHCNM-------------------VLENVKEMWTEVPKTGKGKKKSKPVNKDRYISKMFLRGDSVILVLRNP 110
[Close]
BLAST of mRNA_H-elongata_contig56061.13040.1 vs. uniprot
Match: C3XTF6_BRAFL (Small nuclear ribonucleoprotein Sm D2 n=6 Tax=Bilateria TaxID=33213 RepID=C3XTF6_BRAFL)

HSP 1 Score: 128 bits (321), Expect = 3.060e-36
Identity = 68/99 (68.69%), Postives = 75/99 (75.76%), Query Frame = 1 
Query:   13 QSVKNNTQVLINVRNNHKLLARVKAFDRHCNILFNSKMLCFIIAPVNAFFRVLTDVKEIWTEQPKTGKGKKKAKSVDKDRYISKMFLRGDSVVLVLRNP 309
            QSVKNNTQVLIN RNN KLLARVKAFDRHCN+                   VL +VKE+WTE PKTGKGKKK+K ++KDRYISKMFLRGDSV+LVLRNP
Sbjct:   31 QSVKNNTQVLINCRNNKKLLARVKAFDRHCNM-------------------VLENVKEMWTEVPKTGKGKKKSKPINKDRYISKMFLRGDSVILVLRNP 110
[Close]
BLAST of mRNA_H-elongata_contig56061.13040.1 vs. uniprot
Match: A7SSP8_NEMVE (Small nuclear ribonucleoprotein Sm D2 n=7 Tax=Hexacorallia TaxID=6102 RepID=A7SSP8_NEMVE)

HSP 1 Score: 127 bits (320), Expect = 4.750e-36
Identity = 68/99 (68.69%), Postives = 75/99 (75.76%), Query Frame = 1 
Query:   13 QSVKNNTQVLINVRNNHKLLARVKAFDRHCNILFNSKMLCFIIAPVNAFFRVLTDVKEIWTEQPKTGKGKKKAKSVDKDRYISKMFLRGDSVVLVLRNP 309
            QSVKNNTQVLIN RNN KLLARVKAFDRHCN+                   VL +VKE+WTE PK+GKGKKKAK V+KDRYI+KMFLRGDSV+LVLRNP
Sbjct:   35 QSVKNNTQVLINCRNNRKLLARVKAFDRHCNM-------------------VLENVKEMWTETPKSGKGKKKAKPVNKDRYIAKMFLRGDSVILVLRNP 114
[Close]
BLAST of mRNA_H-elongata_contig56061.13040.1 vs. uniprot
Match: A0A7S3HBV9_9STRA (Small nuclear ribonucleoprotein Sm D2 n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HBV9_9STRA)

HSP 1 Score: 127 bits (319), Expect = 5.310e-36
Identity = 67/102 (65.69%), Postives = 76/102 (74.51%), Query Frame = 1 
Query:    7 IWQSVKNNTQVLINVRNNHKLLARVKAFDRHCNILFNSKMLCFIIAPVNAFFRVLTDVKEIWTEQPKTGKGKKKAKSVDKDRYISKMFLRGDSVVLVLRNPS 312
            + QSVK N+QVLIN RNNHKLLARVKAFDRHCN+                   VL +VKE+WTE PKTGKG KKA+ V+KDRYISKMFLRGDSV+LVLRNP+
Sbjct:   29 LMQSVKQNSQVLINCRNNHKLLARVKAFDRHCNL-------------------VLENVKEMWTETPKTGKGAKKARPVNKDRYISKMFLRGDSVILVLRNPN 111
[Close]
BLAST of mRNA_H-elongata_contig56061.13040.1 vs. uniprot
Match: F0XYE5_AURAN (Small nuclear ribonucleoprotein Sm D2 n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XYE5_AURAN)

HSP 1 Score: 126 bits (317), Expect = 8.680e-36
Identity = 66/99 (66.67%), Postives = 77/99 (77.78%), Query Frame = 1 
Query:   16 SVKNNTQVLINVRNNHKLLARVKAFDRHCNILFNSKMLCFIIAPVNAFFRVLTDVKEIWTEQPKTGKGKKKAKSVDKDRYISKMFLRGDSVVLVLRNPS 312
            S+K+N+QVLINVRNNHKLLARVKAFDRHCN+                   VL +VKE+WTE PKTGKGKKK+K V+K+RYISKMFLRGDSV+LVLRNP+
Sbjct:   23 SMKSNSQVLINVRNNHKLLARVKAFDRHCNM-------------------VLENVKEVWTEIPKTGKGKKKSKPVNKERYISKMFLRGDSVILVLRNPN 102
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig56061.13040.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FW42_ECTSI7.320e-4273.00Small nuclear ribonucleoprotein Sm D2 n=1 Tax=Ecto... [more]
A0A7S2XVF6_9STRA5.090e-3868.63Small nuclear ribonucleoprotein Sm D2 n=1 Tax=Fibr... [more]
A0A6A4WKZ7_AMPAM8.240e-3770.71Small nuclear ribonucleoprotein Sm D2 n=5 Tax=Bila... [more]
A0A835ZMS4_9STRA8.410e-3765.69Small nuclear ribonucleoprotein Sm D2 n=1 Tax=Trib... [more]
C1BS97_LEPSM2.090e-3669.70Small nuclear ribonucleoprotein Sm D2 n=8 Tax=Prot... [more]
A0A2T7P031_POMCA2.090e-3669.70Small nuclear ribonucleoprotein Sm D2 n=12 Tax=Mol... [more]
C3XTF6_BRAFL3.060e-3668.69Small nuclear ribonucleoprotein Sm D2 n=6 Tax=Bila... [more]
A7SSP8_NEMVE4.750e-3668.69Small nuclear ribonucleoprotein Sm D2 n=7 Tax=Hexa... [more]
A0A7S3HBV9_9STRA5.310e-3665.69Small nuclear ribonucleoprotein Sm D2 n=1 Tax=Spum... [more]
F0XYE5_AURAN8.680e-3666.67Small nuclear ribonucleoprotein Sm D2 n=1 Tax=Aure... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig56061contigH-elongata_contig56061:1191..1863 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score143.3
Seed ortholog evalue6.5e-32
Seed eggNOG ortholog2880.D7FW42
Preferred nameSNRPD2
KEGG rclassRC01441
KEGG koko:K00222,ko:K07019,ko:K11096
KEGG ReactionR05639,R07483
KEGG Pathwayko00100,ko01100,ko01110,ko01130,ko03040,map00100,map01100,map01110,map01130,map03040
KEGG ModuleM00101,M00351,M00352,M00354,M00355,M00398
GOsGO:0000245,GO:0000375,GO:0000377,GO:0000387,GO:0000395,GO:0000398,GO:0000974,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005682,GO:0005684,GO:0005685,GO:0005686,GO:0005687,GO:0005689,GO:0005737,GO:0005829,GO:0006139,GO:0006376,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0006810,GO:0006913,GO:0008150,GO:0008152,GO:0008380,GO:0009987,GO:0010467,GO:0016043,GO:0016070,GO:0016071,GO:0022607,GO:0022613,GO:0022618,GO:0030532,GO:0031974,GO:0031981,GO:0032991,GO:0034622,GO:0034641,GO:0034708,GO:0034709,GO:0034715,GO:0034719,GO:0043021,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0044877,GO:0045292,GO:0046483,GO:0046540,GO:0046907,GO:0051169,GO:0051170,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0065003,GO:0070013,GO:0070990,GO:0071004,GO:0071007,GO:0071010,GO:0071011,GO:0071013,GO:0071014,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0097159,GO:0097525,GO:0097526,GO:0120114,GO:1901360,GO:1901363,GO:1902494,GO:1990234,GO:1990446,GO:1990904
EggNOG free text desc.spliceosomal snRNP assembly
EggNOG OGsCOG1958@1,KOG3459@2759
Ec32 ortholog descriptionsmall nuclear ribonucleoprotein D2-like protein
Ec32 orthologEc-01_003300.1
EC1.3.1.70
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03032,ko03041
Hectar predicted targeting categoryother localisation
Exons2
Model size315
Cds size315
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930912.7395813-CDS-H-elongata_contig56061:1190..13981622930912.7395813-CDS-H-elongata_contig56061:1190..1398Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56061 1191..1398 -
1691679622.0645785-CDS-H-elongata_contig56061:1190..13981691679622.0645785-CDS-H-elongata_contig56061:1190..1398Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56061 1191..1398 -
1622930912.760346-CDS-H-elongata_contig56061:1756..18631622930912.760346-CDS-H-elongata_contig56061:1756..1863Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56061 1757..1863 -
1691679622.0820673-CDS-H-elongata_contig56061:1756..18631691679622.0820673-CDS-H-elongata_contig56061:1756..1863Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56061 1757..1863 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig56061.13040.1prot_H-elongata_contig56061.13040.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig56061 1191..1863 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig56061.13040.1

>prot_H-elongata_contig56061.13040.1 ID=prot_H-elongata_contig56061.13040.1|Name=mRNA_H-elongata_contig56061.13040.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=105bp
MYIWQSVKNNTQVLINVRNNHKLLARVKAFDRHCNILFNSKMLCFIIAPV
NAFFRVLTDVKEIWTEQPKTGKGKKKAKSVDKDRYISKMFLRGDSVVLVL
RNPS*
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mRNA from alignment at H-elongata_contig56061:1191..1863-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig56061.13040.1 ID=mRNA_H-elongata_contig56061.13040.1|Name=mRNA_H-elongata_contig56061.13040.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=673bp|location=Sequence derived from alignment at H-elongata_contig56061:1191..1863- (Himanthalia elongata Himel1 dioecious)
ATGTATATATGGCAGAGCGTGAAGAACAACACCCAGGTGCTCATCAACGT
CCGAAACAACCACAAGCTGCTGGCGAGAGTGAAGGCATTCGATCGACACT
GCAACATGTAAGGCGTTGTACAGCTTTATCTTCTATACTTCGAAATGTTT
TTTTTTACGTTTTTTTATCAATTTGCATTGAACCGCGTAAACCGGCATGA
CACAAGAGGGTATCACGCCGGTTTGCGAACACGGGGGAGCACTGTTCAGC
TGACGAGCAGAAGGAAACCAAACCCGGTCGATCCTTCTGCTAAATGTGCG
ACCATACATACATACATGTTCCAGATGACGAATGTCTTGGCAATTGGTAG
GAGGTTCTTCAGATGCGCACGATATTTTTTGCAATTCAAGGAACGTGGTA
ACCTAAATTAGTGTTTTAAATTTGAATTAACGCGGTTTTAGTTTTTAGTT
GTCTTCATTGTCGAGCTTATTTAATTCTAAGATGCTCTGCTTCATCATTG
CCCCCGTTAATGCTTTTTTCAGGGTTCTGACGGATGTAAAAGAAATTTGG
ACAGAGCAACCCAAAACAGGGAAAGGAAAGAAAAAAGCCAAGTCCGTCGA
CAAGGACCGTTACATCAGCAAGATGTTCCTTCGTGGCGACTCTGTCGTAC
TTGTCCTGCGTAACCCTTCATGA
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Coding sequence (CDS) from alignment at H-elongata_contig56061:1191..1863-

>mRNA_H-elongata_contig56061.13040.1 ID=mRNA_H-elongata_contig56061.13040.1|Name=mRNA_H-elongata_contig56061.13040.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=630bp|location=Sequence derived from alignment at H-elongata_contig56061:1191..1863- (Himanthalia elongata Himel1 dioecious)
ATGTATATATGGCAGAGCGTGAAGAACAACACCCAGGTGCTCATCAACGT
CCGAAACAACCACAAGCTGCTGGCGAGAGTGAAGGCATTCGATCGACACT
GCAACATATGTATATATGGCAGAGCGTGAAGAACAACACCCAGGTGCTCA
TCAACGTCCGAAACAACCACAAGCTGCTGGCGAGAGTGAAGGCATTCGAT
CGACACTGCAACATCTTATTTAATTCTAAGATGCTCTGCTTCATCATTGC
CCCCGTTAATGCTTTTTTCAGGGTTCTGACGGATGTAAAAGAAATTTGGA
CAGAGCAACCCAAAACAGGGAAAGGAAAGAAAAAAGCCAAGTCCGTCGAC
AAGGACCGTTACATCAGCAAGATGTTCCTTCGTGGCGACTCTGTCGTACT
TGTCCTGCGTAACCCTTCATGACTTATTTAATTCTAAGATGCTCTGCTTC
ATCATTGCCCCCGTTAATGCTTTTTTCAGGGTTCTGACGGATGTAAAAGA
AATTTGGACAGAGCAACCCAAAACAGGGAAAGGAAAGAAAAAAGCCAAGT
CCGTCGACAAGGACCGTTACATCAGCAAGATGTTCCTTCGTGGCGACTCT
GTCGTACTTGTCCTGCGTAACCCTTCATGA
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