prot_H-elongata_contig56061.13040.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig56061.13040.1
Unique Nameprot_H-elongata_contig56061.13040.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length105
Homology
[Close]
BLAST of mRNA_H-elongata_contig56061.13040.1 vs. uniprot
Match: D7FW42_ECTSI (Small nuclear ribonucleoprotein Sm D2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FW42_ECTSI)

HSP 1 Score: 141 bits (355), Expect = 7.320e-42
Identity = 73/100 (73.00%), Postives = 81/100 (81.00%), Query Frame = 0 
Query:    5 QSVKNNTQVLINVRNNHKLLARVKAFDRHCNILFNSKMLCFIIAPVNAFFRVLTDVKEIWTEQPKTGKGKKKAKSVDKDRYISKMFLRGDSVVLVLRNPS 104
            QSVKNNTQVLINVRNNHKLLAR+KAFDRHCN+                   VLTDVKE+WTEQPKTGKG+KKAK+V+KDRY+SKMFLRGDSVVLVLRNP+
Sbjct:    2 QSVKNNTQVLINVRNNHKLLARIKAFDRHCNM-------------------VLTDVKEMWTEQPKTGKGQKKAKAVNKDRYVSKMFLRGDSVVLVLRNPT 82
[Close]
BLAST of mRNA_H-elongata_contig56061.13040.1 vs. uniprot
Match: A0A7S2XVF6_9STRA (Small nuclear ribonucleoprotein Sm D2 n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XVF6_9STRA)

HSP 1 Score: 132 bits (332), Expect = 5.090e-38
Identity = 70/102 (68.63%), Postives = 78/102 (76.47%), Query Frame = 0 
Query:    3 IWQSVKNNTQVLINVRNNHKLLARVKAFDRHCNILFNSKMLCFIIAPVNAFFRVLTDVKEIWTEQPKTGKGKKKAKSVDKDRYISKMFLRGDSVVLVLRNPS 104
            + QSVK NTQVLINVRNNHKLLARVKAFDRHCN+                   VL +VKE+WTE PKTGKGKKKAK V+KDRYISKMFLRGDSV+LVL+NP+
Sbjct:   26 LMQSVKQNTQVLINVRNNHKLLARVKAFDRHCNM-------------------VLENVKEMWTEVPKTGKGKKKAKPVNKDRYISKMFLRGDSVILVLKNPN 108
[Close]
BLAST of mRNA_H-elongata_contig56061.13040.1 vs. uniprot
Match: A0A6A4WKZ7_AMPAM (Small nuclear ribonucleoprotein Sm D2 n=5 Tax=Bilateria TaxID=33213 RepID=A0A6A4WKZ7_AMPAM)

HSP 1 Score: 129 bits (325), Expect = 8.240e-37
Identity = 70/99 (70.71%), Postives = 75/99 (75.76%), Query Frame = 0 
Query:    5 QSVKNNTQVLINVRNNHKLLARVKAFDRHCNILFNSKMLCFIIAPVNAFFRVLTDVKEIWTEQPKTGKGKKKAKSVDKDRYISKMFLRGDSVVLVLRNP 103
            QSVKNNTQVLIN RNN KLLARVKAFDRHCN+                   VL +VKE+WTE PKTGKGKKKAK V+KDRYISKMFLRGDSV+LVLRNP
Sbjct:   33 QSVKNNTQVLINCRNNKKLLARVKAFDRHCNM-------------------VLENVKEMWTELPKTGKGKKKAKPVNKDRYISKMFLRGDSVILVLRNP 112
[Close]
BLAST of mRNA_H-elongata_contig56061.13040.1 vs. uniprot
Match: A0A835ZMS4_9STRA (Small nuclear ribonucleoprotein Sm D2 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZMS4_9STRA)

HSP 1 Score: 129 bits (324), Expect = 8.410e-37
Identity = 67/102 (65.69%), Postives = 77/102 (75.49%), Query Frame = 0 
Query:    3 IWQSVKNNTQVLINVRNNHKLLARVKAFDRHCNILFNSKMLCFIIAPVNAFFRVLTDVKEIWTEQPKTGKGKKKAKSVDKDRYISKMFLRGDSVVLVLRNPS 104
            + QSVKNN QVLINVRNNHKLLARVKAFDRHCN+                   VLTDVKE+WT+ PK GKG+KKA  V+KDRY+SKMFLRGDSV+LVL+NP+
Sbjct:   26 LMQSVKNNNQVLINVRNNHKLLARVKAFDRHCNM-------------------VLTDVKEMWTDVPKKGKGQKKAHPVNKDRYVSKMFLRGDSVILVLKNPN 108
[Close]
BLAST of mRNA_H-elongata_contig56061.13040.1 vs. uniprot
Match: C1BS97_LEPSM (Small nuclear ribonucleoprotein Sm D2 n=8 Tax=Protostomia TaxID=33317 RepID=C1BS97_LEPSM)

HSP 1 Score: 128 bits (322), Expect = 2.090e-36
Identity = 69/99 (69.70%), Postives = 73/99 (73.74%), Query Frame = 0 
Query:    5 QSVKNNTQVLINVRNNHKLLARVKAFDRHCNILFNSKMLCFIIAPVNAFFRVLTDVKEIWTEQPKTGKGKKKAKSVDKDRYISKMFLRGDSVVLVLRNP 103
            QSVKNNTQVLIN RNN KLL RVKAFDRHCN+                   VL  VKE+WTE PKTGKGKKKAK V+KDRYISKMFLRGDSV+LVLRNP
Sbjct:   33 QSVKNNTQVLINCRNNKKLLGRVKAFDRHCNM-------------------VLESVKEMWTEMPKTGKGKKKAKPVNKDRYISKMFLRGDSVILVLRNP 112
[Close]
BLAST of mRNA_H-elongata_contig56061.13040.1 vs. uniprot
Match: A0A2T7P031_POMCA (Small nuclear ribonucleoprotein Sm D2 n=12 Tax=Mollusca TaxID=6447 RepID=A0A2T7P031_POMCA)

HSP 1 Score: 128 bits (322), Expect = 2.090e-36
Identity = 69/99 (69.70%), Postives = 75/99 (75.76%), Query Frame = 0 
Query:    5 QSVKNNTQVLINVRNNHKLLARVKAFDRHCNILFNSKMLCFIIAPVNAFFRVLTDVKEIWTEQPKTGKGKKKAKSVDKDRYISKMFLRGDSVVLVLRNP 103
            QSVKNNTQVLIN RNN KLLARVKAFDRHCN+                   VL +VKE+WTE PKTGKGKKK+K V+KDRYISKMFLRGDSV+LVLRNP
Sbjct:   31 QSVKNNTQVLINCRNNKKLLARVKAFDRHCNM-------------------VLENVKEMWTEVPKTGKGKKKSKPVNKDRYISKMFLRGDSVILVLRNP 110
[Close]
BLAST of mRNA_H-elongata_contig56061.13040.1 vs. uniprot
Match: C3XTF6_BRAFL (Small nuclear ribonucleoprotein Sm D2 n=6 Tax=Bilateria TaxID=33213 RepID=C3XTF6_BRAFL)

HSP 1 Score: 128 bits (321), Expect = 3.060e-36
Identity = 68/99 (68.69%), Postives = 75/99 (75.76%), Query Frame = 0 
Query:    5 QSVKNNTQVLINVRNNHKLLARVKAFDRHCNILFNSKMLCFIIAPVNAFFRVLTDVKEIWTEQPKTGKGKKKAKSVDKDRYISKMFLRGDSVVLVLRNP 103
            QSVKNNTQVLIN RNN KLLARVKAFDRHCN+                   VL +VKE+WTE PKTGKGKKK+K ++KDRYISKMFLRGDSV+LVLRNP
Sbjct:   31 QSVKNNTQVLINCRNNKKLLARVKAFDRHCNM-------------------VLENVKEMWTEVPKTGKGKKKSKPINKDRYISKMFLRGDSVILVLRNP 110
[Close]
BLAST of mRNA_H-elongata_contig56061.13040.1 vs. uniprot
Match: A7SSP8_NEMVE (Small nuclear ribonucleoprotein Sm D2 n=7 Tax=Hexacorallia TaxID=6102 RepID=A7SSP8_NEMVE)

HSP 1 Score: 127 bits (320), Expect = 4.750e-36
Identity = 68/99 (68.69%), Postives = 75/99 (75.76%), Query Frame = 0 
Query:    5 QSVKNNTQVLINVRNNHKLLARVKAFDRHCNILFNSKMLCFIIAPVNAFFRVLTDVKEIWTEQPKTGKGKKKAKSVDKDRYISKMFLRGDSVVLVLRNP 103
            QSVKNNTQVLIN RNN KLLARVKAFDRHCN+                   VL +VKE+WTE PK+GKGKKKAK V+KDRYI+KMFLRGDSV+LVLRNP
Sbjct:   35 QSVKNNTQVLINCRNNRKLLARVKAFDRHCNM-------------------VLENVKEMWTETPKSGKGKKKAKPVNKDRYIAKMFLRGDSVILVLRNP 114
[Close]
BLAST of mRNA_H-elongata_contig56061.13040.1 vs. uniprot
Match: A0A7S3HBV9_9STRA (Small nuclear ribonucleoprotein Sm D2 n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HBV9_9STRA)

HSP 1 Score: 127 bits (319), Expect = 5.310e-36
Identity = 67/102 (65.69%), Postives = 76/102 (74.51%), Query Frame = 0 
Query:    3 IWQSVKNNTQVLINVRNNHKLLARVKAFDRHCNILFNSKMLCFIIAPVNAFFRVLTDVKEIWTEQPKTGKGKKKAKSVDKDRYISKMFLRGDSVVLVLRNPS 104
            + QSVK N+QVLIN RNNHKLLARVKAFDRHCN+                   VL +VKE+WTE PKTGKG KKA+ V+KDRYISKMFLRGDSV+LVLRNP+
Sbjct:   29 LMQSVKQNSQVLINCRNNHKLLARVKAFDRHCNL-------------------VLENVKEMWTETPKTGKGAKKARPVNKDRYISKMFLRGDSVILVLRNPN 111
[Close]
BLAST of mRNA_H-elongata_contig56061.13040.1 vs. uniprot
Match: F0XYE5_AURAN (Small nuclear ribonucleoprotein Sm D2 n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XYE5_AURAN)

HSP 1 Score: 126 bits (317), Expect = 8.680e-36
Identity = 66/99 (66.67%), Postives = 77/99 (77.78%), Query Frame = 0 
Query:    6 SVKNNTQVLINVRNNHKLLARVKAFDRHCNILFNSKMLCFIIAPVNAFFRVLTDVKEIWTEQPKTGKGKKKAKSVDKDRYISKMFLRGDSVVLVLRNPS 104
            S+K+N+QVLINVRNNHKLLARVKAFDRHCN+                   VL +VKE+WTE PKTGKGKKK+K V+K+RYISKMFLRGDSV+LVLRNP+
Sbjct:   23 SMKSNSQVLINVRNNHKLLARVKAFDRHCNM-------------------VLENVKEVWTEIPKTGKGKKKSKPVNKERYISKMFLRGDSVILVLRNPN 102
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig56061.13040.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FW42_ECTSI7.320e-4273.00Small nuclear ribonucleoprotein Sm D2 n=1 Tax=Ecto... [more]
A0A7S2XVF6_9STRA5.090e-3868.63Small nuclear ribonucleoprotein Sm D2 n=1 Tax=Fibr... [more]
A0A6A4WKZ7_AMPAM8.240e-3770.71Small nuclear ribonucleoprotein Sm D2 n=5 Tax=Bila... [more]
A0A835ZMS4_9STRA8.410e-3765.69Small nuclear ribonucleoprotein Sm D2 n=1 Tax=Trib... [more]
C1BS97_LEPSM2.090e-3669.70Small nuclear ribonucleoprotein Sm D2 n=8 Tax=Prot... [more]
A0A2T7P031_POMCA2.090e-3669.70Small nuclear ribonucleoprotein Sm D2 n=12 Tax=Mol... [more]
C3XTF6_BRAFL3.060e-3668.69Small nuclear ribonucleoprotein Sm D2 n=6 Tax=Bila... [more]
A7SSP8_NEMVE4.750e-3668.69Small nuclear ribonucleoprotein Sm D2 n=7 Tax=Hexa... [more]
A0A7S3HBV9_9STRA5.310e-3665.69Small nuclear ribonucleoprotein Sm D2 n=1 Tax=Spum... [more]
F0XYE5_AURAN8.680e-3666.67Small nuclear ribonucleoprotein Sm D2 n=1 Tax=Aure... [more]

Pages

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001163LSM domain, eukaryotic/archaea-typeSMARTSM00651Sm3coord: 3..101
e-value: 1.6E-4
score: 31.1
IPR001163LSM domain, eukaryotic/archaea-typePFAMPF01423LSMcoord: 8..38
e-value: 2.6E-5
score: 23.8
coord: 56..99
e-value: 1.8E-5
score: 24.3
NoneNo IPR availableGENE3D2.30.30.100coord: 41..104
e-value: 5.0E-16
score: 60.2
NoneNo IPR availableGENE3D2.30.30.100coord: 1..40
e-value: 7.8E-10
score: 40.5
NoneNo IPR availablePANTHERPTHR12777:SF1coord: 54..103
NoneNo IPR availablePANTHERPTHR12777:SF1coord: 5..38
NoneNo IPR availableTMHMMTMhelixcoord: 36..58
IPR027248Small nuclear ribonucleoprotein Sm D2PANTHERPTHR12777SMALL NUCLEAR RIBONUCLEOPROTEIN SM D2coord: 5..38
IPR027248Small nuclear ribonucleoprotein Sm D2PANTHERPTHR12777SMALL NUCLEAR RIBONUCLEOPROTEIN SM D2coord: 54..103
IPR010920LSM domain superfamilySUPERFAMILY50182Sm-like ribonucleoproteinscoord: 10..100

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig56061contigH-elongata_contig56061:1191..1863 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig56061.13040.1mRNA_H-elongata_contig56061.13040.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig56061 1191..1863 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig56061.13040.1 ID=prot_H-elongata_contig56061.13040.1|Name=mRNA_H-elongata_contig56061.13040.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=105bp
MYIWQSVKNNTQVLINVRNNHKLLARVKAFDRHCNILFNSKMLCFIIAPV
NAFFRVLTDVKEIWTEQPKTGKGKKKAKSVDKDRYISKMFLRGDSVVLVL
RNPS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001163LSM_dom_euk/arc
IPR027248Sm_D2
IPR010920LSM_dom_sf