mRNA_H-elongata_contig56022.13036.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig56022.13036.1
Unique NamemRNA_H-elongata_contig56022.13036.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig56022.13036.1 vs. uniprot
Match: D7FVA8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVA8_ECTSI)

HSP 1 Score: 63.9 bits (154), Expect = 8.860e-9
Identity = 43/98 (43.88%), Postives = 58/98 (59.18%), Query Frame = 1 
Query:    1 LALAREAQRQLERTVRDKEALQXXXXXXXXXXEAALLVAALAEEEKTKLEARIARLSSELKLQAAPLMALQLEIDQARKGSLIMRDRLKEERKNNFLR 294
            L  +R+ + QLER +++ EAL+                  +AE+EK  LE R+A LS E+KLQ APL ALQLE+ Q R  +  MR RLKEER+ + LR
Sbjct:  200 LRASRDVRGQLERALQEAEALRADNIAFKTRVN-------VAEKEKAHLETRVALLSDEVKLQIAPLKALQLELTQTRSDTETMRQRLKEERRESRLR 290
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BLAST of mRNA_H-elongata_contig56022.13036.1 vs. uniprot
Match: A0A6H5L8F2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8F2_9PHAE)

HSP 1 Score: 62.8 bits (151), Expect = 2.150e-8
Identity = 43/98 (43.88%), Postives = 57/98 (58.16%), Query Frame = 1 
Query:    1 LALAREAQRQLERTVRDKEALQXXXXXXXXXXEAALLVAALAEEEKTKLEARIARLSSELKLQAAPLMALQLEIDQARKGSLIMRDRLKEERKNNFLR 294
            L  +R+ + QLER +++ EAL+                  LAE+EK  LE R+A LS E+KLQ APL ALQLE+ Q R  +  MR  LKEER+ + LR
Sbjct:   98 LRASRDVRGQLERALQEAEALRADNIAFKTRVN-------LAEKEKAHLETRVALLSDEVKLQIAPLKALQLELTQTRSDTETMRQXLKEERRESRLR 188
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig56022.13036.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FVA8_ECTSI8.860e-943.88Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L8F2_9PHAE2.150e-843.88Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig56022contigH-elongata_contig56022:461..2330 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size511
Cds size303
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig56022.13036.1prot_H-elongata_contig56022.13036.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig56022 1428..2330 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930912.11568-UTR-H-elongata_contig56022:460..5831622930912.11568-UTR-H-elongata_contig56022:460..583Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig56022 461..583 -
1691679621.7398956-UTR-H-elongata_contig56022:460..5831691679621.7398956-UTR-H-elongata_contig56022:460..583Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig56022 461..583 -
1622930912.1365442-UTR-H-elongata_contig56022:968..10281622930912.1365442-UTR-H-elongata_contig56022:968..1028Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig56022 969..1028 -
1691679621.7612529-UTR-H-elongata_contig56022:968..10281691679621.7612529-UTR-H-elongata_contig56022:968..1028Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig56022 969..1028 -
1622930912.17939-UTR-H-elongata_contig56022:1402..14271622930912.17939-UTR-H-elongata_contig56022:1402..1427Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig56022 1403..1427 -
1691679621.7838678-UTR-H-elongata_contig56022:1402..14271691679621.7838678-UTR-H-elongata_contig56022:1402..1427Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig56022 1403..1427 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930912.1998613-CDS-H-elongata_contig56022:1427..15751622930912.1998613-CDS-H-elongata_contig56022:1427..1575Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56022 1428..1575 -
1691679621.8022757-CDS-H-elongata_contig56022:1427..15751691679621.8022757-CDS-H-elongata_contig56022:1427..1575Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56022 1428..1575 -
1622930912.2229705-CDS-H-elongata_contig56022:2175..23301622930912.2229705-CDS-H-elongata_contig56022:2175..2330Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56022 2176..2330 -
1691679621.8144374-CDS-H-elongata_contig56022:2175..23301691679621.8144374-CDS-H-elongata_contig56022:2175..2330Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56022 2176..2330 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig56022.13036.1

>prot_H-elongata_contig56022.13036.1 ID=prot_H-elongata_contig56022.13036.1|Name=mRNA_H-elongata_contig56022.13036.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=101bp
LALAREAQRQLERTVRDKEALQRDKYAYQRDKEAALLVAALAEEEKTKLE
ARIARLSSELKLQAAPLMALQLEIDQARKGSLIMRDRLKEERKNNFLRQI
*
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mRNA from alignment at H-elongata_contig56022:461..2330-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig56022.13036.1 ID=mRNA_H-elongata_contig56022.13036.1|Name=mRNA_H-elongata_contig56022.13036.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1870bp|location=Sequence derived from alignment at H-elongata_contig56022:461..2330- (Himanthalia elongata Himel1 dioecious)
CTTGCTCTTGCTAGAGAAGCTCAACGCCAGCTTGAGCGCACGGTTCGAGA
CAAAGAGGCCCTCCAAAGAGACAAATATGCCTATCAAAGAGACAAAGAAG
CCGCGCTTTTGGTAGCCGCCCTGGCAGAGGAGGAGAAGACGAAGCTAGAA
GCAAGGTAATCGTTCCAATGACGTTTCATATTTGATTATGGCGGGTGGAA
AAAGCGCTAGTAGTATGTTTCATGCCACACCCGTAAACCATTCATGTTCA
TGTAGCAGCTGCTTGCTATGTTGCCTCCGCCCCCCAAGAAAGCGAAGCTG
GATTTTCTGTCTTTTCGGACCACCTGCCTTGTACTACCTTCAACGGGCGC
AATAACACCGCGCCGTTACGTTCAGAGATACCCACACCAGTACCTTCTTG
CAGTGGTCATGGTTGGGTCTCTCCTAATTATGCCAACGGCTGCGGTAGCC
TTGTTCGATGGCCACTCTTGGGACTATATGAGAAACTGCCTGAGTCGAGC
GCGCCGAGATAAATCCCAAATCGTGCTGCATTGTGTTCTCTATCAAGACA
TGCATGTGCGTGCCTGGCTAGGGAATGACTAACCAACACAGGTTAAGACT
ATAAATAGAGAGAGCTTTATAAATGTATCGCTCTAAACGTTTTGGGCATT
ACATCATTGTCCGTGACACGTTTTTCCTGAGTTCACCCTGCCTCTCGTTG
ACTCCCGTACGCCACGTATGCCTGGGGGAACCTTCGAAATGTCGTCCATC
GCCAGGATAGCACGATTATCTAGCGAGTTGAAGCTCCAGGCGGCTCCTCT
TATGGCACTACAGCTAGAGATCGACCAAGCTAGAAAAGGAAGCTTGATAA
TGCGGGATAGGCTCAAGGAAGAACGCAAGAATAACTTTCTCAGGCAAATA
TAAGCTTTGGCTTCGGGCGGCTTCACCCGTGGACGGTACAAGGTCGCGTC
ATACAAAACACTTTATGGAGCCCGCCGTCGATGTTACCGCTTCCGGCGGG
ACTCGAGACTCGTAGGGATCGTGTTCGGTAGTTTACTCGAACGTGATGGT
GAATCGTTTTGAAACTGGCTACGTGATCCGTCCGGAGTTCGTCTTGATCC
GAACCATTAGAAAGAACGGCTGATGTCGGGCCACTCGTTTCGAAAACAAC
GTGACATGACCCGAACACAAGACTCAACCGAATCTCGCTCCGAACGAAAC
CGAGGTGGATCCGATTTTGCTTTTGCTTTTGCTTTTGCTGCAGTCGGATG
TAAAGCCACAAACCACAACAGGTAAAACAACGCCGAAAGGGTAATATCTG
AGGCCCGGAAGCGGATGAATAACCTCGAATTCGACCTCGGAGAGGCTTCA
AAAGAGACCCAAGTTAGTTAGCCCGTGTCGAAGCATCAACGTCAGAGAGT
GGCCGAAGAGTGTTATTTGGACTAATTATTTAAGTTTTGGTAATGGAGGA
GAGCCACAAGAGGCACGGAAAGTGAATTTCGATGGCACCAACGTGTTTCC
CTTGATATTCATCTCAAATCGGACGCATGAATGCCAGGGGAAATCCTAGC
CCTCTGGCCAAACTGGAAGCCACTGGGACATCGTTTCCTAACCACTTGGC
TTGGAGGTAGTAGAACGTAGTGGATTGACGGGGTGCACAAGGCATACGCT
GCTCTAACTCCGTACAACGTCACTTAAGAAATAATCGTGGTGACTCGAGA
AATGGACGTTTCGGGAAATTATCCCCTTCCTCGGCCGGCGGTTTCAGCGC
TCAGCACTAAGGGCTTCAACGTTCGAGGGAATGTTCAAGGACGCCTCGGC
GGCGGTGGAACTTCTAAGGAACAACCTTGAACAAAATAAGACCGATAAAA
AGCGCATGATAGAAGAGGTG
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Coding sequence (CDS) from alignment at H-elongata_contig56022:461..2330-

>mRNA_H-elongata_contig56022.13036.1 ID=mRNA_H-elongata_contig56022.13036.1|Name=mRNA_H-elongata_contig56022.13036.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=606bp|location=Sequence derived from alignment at H-elongata_contig56022:461..2330- (Himanthalia elongata Himel1 dioecious)
CTTGCTCTTGCTAGAGAAGCTCAACGCCAGCTTGAGCGCACGGTTCGAGA
CAAAGAGGCCCTCCAAAGAGACAAATATGCCTATCAAAGAGACAAAGAAG
CCGCGCTTTTGGTAGCCGCCCTGGCAGAGGAGGAGAAGACGAAGCTAGAA
GCAAGCTTGCTCTTGCTAGAGAAGCTCAACGCCAGCTTGAGCGCACGGTT
CGAGACAAAGAGGCCCTCCAAAGAGACAAATATGCCTATCAAAGAGACAA
AGAAGCCGCGCTTTTGGTAGCCGCCCTGGCAGAGGAGGAGAAGACGAAGC
TAGAAGCAAGGATAGCACGATTATCTAGCGAGTTGAAGCTCCAGGCGGCT
CCTCTTATGGCACTACAGCTAGAGATCGACCAAGCTAGAAAAGGAAGCTT
GATAATGCGGGATAGGCTCAAGGAAGAACGCAAGAATAACTTTCTCAGGC
AAATATAAGATAGCACGATTATCTAGCGAGTTGAAGCTCCAGGCGGCTCC
TCTTATGGCACTACAGCTAGAGATCGACCAAGCTAGAAAAGGAAGCTTGA
TAATGCGGGATAGGCTCAAGGAAGAACGCAAGAATAACTTTCTCAGGCAA
ATATAA
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