mRNA_H-elongata_contig56000.13031.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig56000.13031.1
Unique NamemRNA_H-elongata_contig56000.13031.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig56000.13031.1 vs. uniprot
Match: D7FLC4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLC4_ECTSI)

HSP 1 Score: 252 bits (644), Expect = 7.910e-76
Identity = 130/159 (81.76%), Postives = 140/159 (88.05%), Query Frame = 1 
Query:    1 QVVRREHYLTFMEWFVYTLPHVALPVKVWRMYRALKDDDVPFVSFPLSQDKSAFYSHRQAMSGPAIPGRFSFRFSRQPSCITVDYTVQARAVEGRAQAAVMSYRIKISFIDIRVVMLRIENLLLRGDSHGHGHGSVEHNQGRMLEETNLVQGPRAMENG 477
            +VVRREHYL FMEWFVYTLP VALPVK+WRMYRAL+DD++PFVSFPLSQDKSAFYSHRQAMSGPAIPGRFSFRFSRQPSCITVDYTVQARAVEGR QA VMSYRIKIS ID+R VMLRIENLLLRGD         +  QGR+LEET+LVQGP  +ENG
Sbjct:  368 RVVRREHYLAFMEWFVYTLPQVALPVKIWRMYRALRDDNIPFVSFPLSQDKSAFYSHRQAMSGPAIPGRFSFRFSRQPSCITVDYTVQARAVEGRPQATVMSYRIKISAIDVRGVMLRIENLLLRGDE--------QVAQGRVLEETSLVQGP--VENG 516
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BLAST of mRNA_H-elongata_contig56000.13031.1 vs. uniprot
Match: A0A6H5J9Z1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9Z1_9PHAE)

HSP 1 Score: 252 bits (644), Expect = 6.710e-75
Identity = 130/159 (81.76%), Postives = 140/159 (88.05%), Query Frame = 1 
Query:    1 QVVRREHYLTFMEWFVYTLPHVALPVKVWRMYRALKDDDVPFVSFPLSQDKSAFYSHRQAMSGPAIPGRFSFRFSRQPSCITVDYTVQARAVEGRAQAAVMSYRIKISFIDIRVVMLRIENLLLRGDSHGHGHGSVEHNQGRMLEETNLVQGPRAMENG 477
            +VVRREHYL FMEWFVYTLP VALPVK+WRMYRAL+DD++PFVSFPLSQDKSAFYSHRQAMSGPAIPGRFSFRFSRQPSCITVDYTVQARAVEGR QA VMSYRIKIS ID+R VMLRIENLLLRGD         +  QGR+LEET+LVQGP  +ENG
Sbjct:  709 RVVRREHYLAFMEWFVYTLPQVALPVKIWRMYRALRDDNIPFVSFPLSQDKSAFYSHRQAMSGPAIPGRFSFRFSRQPSCITVDYTVQARAVEGRPQATVMSYRIKISAIDVRGVMLRIENLLLRGDE--------QVAQGRVLEETSLVQGP--VENG 857
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig56000.13031.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FLC4_ECTSI7.910e-7681.76Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5J9Z1_9PHAE6.710e-7581.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig56000contigH-elongata_contig56000:223..3019 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-12_007620.1
Exons5
Model size618
Cds size618
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig56000.13031.1prot_H-elongata_contig56000.13031.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig56000 223..3019 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930911.573226-CDS-H-elongata_contig56000:222..5011622930911.573226-CDS-H-elongata_contig56000:222..501Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56000 223..501 -
1691679621.5627658-CDS-H-elongata_contig56000:222..5011691679621.5627658-CDS-H-elongata_contig56000:222..501Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56000 223..501 -
1622930911.5890043-CDS-H-elongata_contig56000:868..9161622930911.5890043-CDS-H-elongata_contig56000:868..916Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56000 869..916 -
1691679621.580617-CDS-H-elongata_contig56000:868..9161691679621.580617-CDS-H-elongata_contig56000:868..916Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56000 869..916 -
1622930911.6121552-CDS-H-elongata_contig56000:1468..15821622930911.6121552-CDS-H-elongata_contig56000:1468..1582Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56000 1469..1582 -
1691679621.5918608-CDS-H-elongata_contig56000:1468..15821691679621.5918608-CDS-H-elongata_contig56000:1468..1582Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56000 1469..1582 -
1622930911.632763-CDS-H-elongata_contig56000:2203..22991622930911.632763-CDS-H-elongata_contig56000:2203..2299Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56000 2204..2299 -
1691679621.6026597-CDS-H-elongata_contig56000:2203..22991691679621.6026597-CDS-H-elongata_contig56000:2203..2299Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56000 2204..2299 -
1622930911.6558008-CDS-H-elongata_contig56000:2938..30191622930911.6558008-CDS-H-elongata_contig56000:2938..3019Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56000 2939..3019 -
1691679621.6108081-CDS-H-elongata_contig56000:2938..30191691679621.6108081-CDS-H-elongata_contig56000:2938..3019Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56000 2939..3019 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig56000.13031.1

>prot_H-elongata_contig56000.13031.1 ID=prot_H-elongata_contig56000.13031.1|Name=mRNA_H-elongata_contig56000.13031.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=206bp
QVVRREHYLTFMEWFVYTLPHVALPVKVWRMYRALKDDDVPFVSFPLSQD
KSAFYSHRQAMSGPAIPGRFSFRFSRQPSCITVDYTVQARAVEGRAQAAV
MSYRIKISFIDIRVVMLRIENLLLRGDSHGHGHGSVEHNQGRMLEETNLV
QGPRAMENGAAAAAAAAAAAAAAAAATGGGAPTGTGAGPGGHPGAANGVH
HETGLG
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mRNA from alignment at H-elongata_contig56000:223..3019-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig56000.13031.1 ID=mRNA_H-elongata_contig56000.13031.1|Name=mRNA_H-elongata_contig56000.13031.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2797bp|location=Sequence derived from alignment at H-elongata_contig56000:223..3019- (Himanthalia elongata Himel1 dioecious)
CAGGTGGTGCGGAGAGAGCACTACCTGACCTTCATGGAGTGGTTCGTCTA
CACCCTCCCCCACGTGGCGCTGCCTGTCAAGGTAATAGCTGAGAAGCCAA
AGAAAGACCCTCGCTCGTGTCAAGCCACATTGAATCGAATCGAATCGAGT
CGTATCTTGTCGTATCCTATAGAGTCGCGTCTAATCATATCCCATTCCGT
CCCATGGATTCGCATCATATCCCGCAGAGCGGACCCTCATTCCATCCCAT
GGAATTGCATCGCACCATATATCATATCGTTGCATCGAATCGCATCACAT
CCGCATTCAATCGCGTAGCATCCCATTCCATCCCATCCATCCCTCTGTAC
TGAATCGAATTGCATTACATAATATCCGAGATAATCCCATCCAACCGCAT
CACATCACACCACATCTCACTGGATCGAATCGAATCCCATTCCATCCCAT
TTCACCCCATCGAATGACATAATATCACCCCATCGAATGGCATAATATCA
CGACTCTCACCGTACGTGTGCTGCTTGAGACTTCTGCAGTAGTAGTTGCC
AAAGACAACATGCGCAAATCGAGCGCCAGTGGGACGACTAAAGAAGCCAT
TATCGATTTCAGAAGGCTAGCAGCGCCAACCCCCCCCCCCCCGCCCGCCC
GCCCTTCCGTCGTTCTCCCCTCTCTATTTAATGAATGATGAATGGTGGAT
GACGGATGCTCATCACAAAGGTCTGGCGGATGTACCGAGCTCTTAAAGAT
GATGACGTGCCATTTGTGTCCTTCCCGCTGTCTCAGGACAAGAGTGCATT
CTATTCGCATAGACAGGTGAGAACCTCTCTTATTTTATCTAGTCAGCCCT
ATATAATATTCAATCAAACCAATCAACTCAAATTAATAGGGTAAGTGTGT
TATTAGCTCAAAACCCTTTCCCTCAATCTCCCTACCCCATCTCCCTACCC
CATCTCCCTACCCCATCGCCCTTCCCTGGATACTGACGCGAATGCTCGGC
AGAGAAGTCTCCTTCCTCTCGAGGATATGTGGTAAATAACCTAACAGCCA
ATATATGCAAAACTCGAGTACGTCTCTTTCCCTCCCCCCCCTGGCCCTTC
ATTTGATACATACGCGTAGCACGGCGCAACTACAGTAGCTCTGCCCAGGA
TATTCGAAAGCTTGTCCTCCTACCCCTTTCAAGCTGCACACGACACCGGC
CGACGGATGCGTTTTTCGTTCGCGATGACGCCCCAGGGTAGAGAAGCTGT
TTTTGAGCGCGTGTGTGAAAGTCATACTTTTCTAGCTATATTTCAGGGGA
CATGCAACACTAAACACCCCCGTCCCGTCCCGTCTGCCGCATTTTAACCC
AAAAGCAACGCCAAAAATCTGTACCACCCCCCCGCCCCCCGCTCTTGATC
TGCATTTGTTTTGTGTGTTCGTTTCGGCGTGAAACAGGCGATGTCCGGCC
CCGCCATCCCAGGGCGCTTCAGCTTCCGATTCTCTCGGCAGCCATCGTGC
ATAACCGTCGACTACACGGTGCAGGCGCGCGCTGTCGAGGGTAGAGCTCA
GGTGATCCATAACTTTATACTTCACTGCTGCCATAATACTATATTTACGC
TATTAATGTGAAGGTGTTTATTTGCTAATACGTGAATATTGACTTGTAGT
CGCACACGATTTGGGACACTTTTGAAAGGTAGGGGAAAGGGGGGCAGCCT
TCGTTGTTGATTTTCGATGCCTCATGCGGCCGCCACCTGTTATTGGGTGG
AAACCCCTGCGCGTAACGCTGACGAAGGTTGCTGATTTTACTCCCCCCAC
CACCGTGACACTCTTTGCAATCTCTCCTCGATCCGCGTAGCCACTCCAAA
AGCAACCGTGGATTACCCCTTTTTGGTTAACCTTCCTAACAATGCCGAGA
CCAAGGCCAAGACCAGGACCACCTGCCTTCCTTCCTTCCTTCCTTCCTTC
CTTCCTTAGCCCCGACTCCTTTGTTATTCCTTTTTGTACTTATATTACGT
CTTTCTTGTTTCCCGAACGACAGTGTCACCCTACCCGACCGCATTGCTTT
CTTCCTCCCCCGTCCCTATGTTTCCCTTCGGATCTCTCCTGAAAACCCTG
CAGGCGGCGGTCATGAGCTACCGCATCAAGATCAGCTTCATCGACATCAG
GGTGAGCTGAAATATCGTATCCATTTTCCCCGCCTTTGCCTTTATAAACC
CTCTGGCCACTTGACTGATTTTGAATTATTGACTCACCGATTCACCGATT
TACCGCCGTACCGCACCGTACGGATCCGAATCTTCCGAGAAGATACGATC
TTTTGAAGGGCGGTACCTCGTTGTAGGTGATAACACATCACAGCACAACA
TAGCATAACACTATCAGAACCGTGAACCGATGACACATCTAAAAGTCCAC
ATTGTTCTTTAAAACAAGTGTCGTCTGCTTCTCACTGCTGCGGCAGTTTC
ACACCCACACACGCATGTACATACATGACTGGAACGTGCGCGCTATGGGA
TATTGTTGATTCAAACAGGTCGTAATGCTTCGCATCGAGAACCTCCTCCT
GAGGGGTGACAGCCACGGCCACGGCCACGGCAGCGTCGAACACAACCAGG
GCAGGATGCTTGAGGAAACTAACCTCGTGCAAGGCCCGCGCGCGATGGAA
AACGGCGCGGCCGCTGCCGCGGCGGCAGCAGCAGCAGCGGCAGCAGCGGC
CGCAGCCACGGGGGGTGGGGCGCCAACCGGAACGGGGGCGGGCCCCGGTG
GGCACCCCGGGGCAGCCAACGGAGTGCACCACGAGACCGGGCTTGGT
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Coding sequence (CDS) from alignment at H-elongata_contig56000:223..3019-

>mRNA_H-elongata_contig56000.13031.1 ID=mRNA_H-elongata_contig56000.13031.1|Name=mRNA_H-elongata_contig56000.13031.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1236bp|location=Sequence derived from alignment at H-elongata_contig56000:223..3019- (Himanthalia elongata Himel1 dioecious)
CAGGTGGTGCGGAGAGAGCACTACCTGACCTTCATGGAGTGGTTCGTCTA
CACCCTCCCCCACGTGGCGCTGCCTGTCAAGCAGGTGGTGCGGAGAGAGC
ACTACCTGACCTTCATGGAGTGGTTCGTCTACACCCTCCCCCACGTGGCG
CTGCCTGTCAAGGTCTGGCGGATGTACCGAGCTCTTAAAGATGATGACGT
GCCATTTGTGTCCTTCCCGCTGTCTCAGGACAAGAGTGCATTCTATTCGC
ATAGACAGGTCTGGCGGATGTACCGAGCTCTTAAAGATGATGACGTGCCA
TTTGTGTCCTTCCCGCTGTCTCAGGACAAGAGTGCATTCTATTCGCATAG
ACAGGCGATGTCCGGCCCCGCCATCCCAGGGCGCTTCAGCTTCCGATTCT
CTCGGCAGCCATCGTGCATAACCGTCGACTACACGGTGCAGGCGCGCGCT
GTCGAGGGTAGAGCTCAGGCGATGTCCGGCCCCGCCATCCCAGGGCGCTT
CAGCTTCCGATTCTCTCGGCAGCCATCGTGCATAACCGTCGACTACACGG
TGCAGGCGCGCGCTGTCGAGGGTAGAGCTCAGGCGGCGGTCATGAGCTAC
CGCATCAAGATCAGCTTCATCGACATCAGGGCGGCGGTCATGAGCTACCG
CATCAAGATCAGCTTCATCGACATCAGGGTCGTAATGCTTCGCATCGAGA
ACCTCCTCCTGAGGGGTGACAGCCACGGCCACGGCCACGGCAGCGTCGAA
CACAACCAGGGCAGGATGCTTGAGGAAACTAACCTCGTGCAAGGCCCGCG
CGCGATGGAAAACGGCGCGGCCGCTGCCGCGGCGGCAGCAGCAGCAGCGG
CAGCAGCGGCCGCAGCCACGGGGGGTGGGGCGCCAACCGGAACGGGGGCG
GGCCCCGGTGGGCACCCCGGGGCAGCCAACGGAGTGCACCACGAGACCGG
GCTTGGTGTCGTAATGCTTCGCATCGAGAACCTCCTCCTGAGGGGTGACA
GCCACGGCCACGGCCACGGCAGCGTCGAACACAACCAGGGCAGGATGCTT
GAGGAAACTAACCTCGTGCAAGGCCCGCGCGCGATGGAAAACGGCGCGGC
CGCTGCCGCGGCGGCAGCAGCAGCAGCGGCAGCAGCGGCCGCAGCCACGG
GGGGTGGGGCGCCAACCGGAACGGGGGCGGGCCCCGGTGGGCACCCCGGG
GCAGCCAACGGAGTGCACCACGAGACCGGGCTTGGT
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