mRNA_H-elongata_contig55955.13025.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig55955.13025.1
Unique NamemRNA_H-elongata_contig55955.13025.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig55955.13025.1 vs. uniprot
Match: D7G9E6_ECTSI (ELM2 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9E6_ECTSI)

HSP 1 Score: 170 bits (431), Expect = 9.550e-43
Identity = 109/251 (43.43%), Postives = 149/251 (59.36%), Query Frame = 1 
Query:  709 RPRRLAMPPGQTPAEVGRV--SRVPATAAVECKSLLRGRSMTREAQGDVVSEGEGENGSPQAAFPHRKAAVGPEHQVVIPP-LLSEEEQAAYREELDK-GELGGTQVWASIRDWKEEDKSRLDEYLWQAKRSMEAKRFMPGVPAAINIGNGGDRRRKRRMAWAVASAGANTEPPGKVSVRCSGKDLVEVSKEAVQPFQVEEMALHAWMQTKDLNDFG---------SALSVLE-AQADDSGPLATWTKTQV 1419
            RPRRLAMPP  +   +G    +RV      +C+  LR   + R A     SE +G +      +P ++  VG +HQ  IP  LL+E E+AA +  +++  E+GGT VW+S+RDW   ++ RLD YL +A+R+ + KR  PGVPA I+I NGGDRRRKR+MAWAV  AG   E   K+ V C+G  + EVS+  +QP QVEE+A+ A MQ    N  G         +AL +L+    DDSGPLATWT  Q+
Sbjct:  188 RPRRLAMPPADSATGLGGGGGARVEEAGGRKCQQQLRSGLLIRAAHAGEESE-DGLDSPKLEQYPQKETNVGEDHQADIPSMLLTEAERAADKAAMEETAEMGGTAVWSSVRDWTASERERLDGYLEEARRAADEKRMSPGVPALISINNGGDRRRKRKMAWAVM-AGGKPEDEEKLRVGCAGGGVSEVSRRELQPTQVEELAMQALMQEDAGNKKGKGSLMDNTRTALGLLDNTMVDDSGPLATWTGPQI 436
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BLAST of mRNA_H-elongata_contig55955.13025.1 vs. uniprot
Match: A0A6H5K2H5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2H5_9PHAE)

HSP 1 Score: 165 bits (418), Expect = 2.720e-40
Identity = 107/251 (42.63%), Postives = 148/251 (58.96%), Query Frame = 1 
Query:  709 RPRRLAMPPGQTPAEVGRVS--RVPATAAVECKSLLRGRSMTREAQGDVVSEGEGENGSPQAAFPHRKAAVGPEHQVVIPP-LLSEEEQAAYREELDKG-ELGGTQVWASIRDWKEEDKSRLDEYLWQAKRSMEAKRFMPGVPAAINIGNGGDRRRKRRMAWAVASAGANTEPPGKVSVRCSGKDLVEVSKEAVQPFQVEEMALHAWMQTKDLNDFG---------SALSVLE-AQADDSGPLATWTKTQV 1419
            RPRRLAMPP  +   +G     RV      +C+  LRG  + R A     S  +G +      +P ++  VG +HQ  IP  LL+E E+AA +  +++  E+GGT VW+S+RDW   ++ RLD YL +A+R+ + KR  PGVPA I+I NGGDRRRKR++AWAV  AG   E   K+ V C+G  + EVS+  +QP QVEE+A+ A M+    N  G         +AL +L+    DDSGPLATWT  Q+
Sbjct:  339 RPRRLAMPPADSATGLGDGGSVRVEEARGTKCQQQLRGGLLIRAAHPGEESA-DGLDSPKLEQYPQKETNVGIDHQADIPSMLLTEAERAADKAAMEETLEMGGTAVWSSVRDWTASERERLDGYLEEARRAADEKRMSPGVPALISINNGGDRRRKRKIAWAVM-AGGKPEDKEKLLVTCAGGGVSEVSRSELQPTQVEELAMQALMREDAGNKKGKGSLIDNARTALGLLDNTMVDDSGPLATWTGPQI 587
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig55955.13025.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G9E6_ECTSI9.550e-4343.43ELM2 domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5K2H5_9PHAE2.720e-4042.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig55955contigH-elongata_contig55955:936..3565 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-28_000660.1
Exons4
Model size1419
Cds size1419
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig55955.13025.1prot_H-elongata_contig55955.13025.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig55955 936..3565 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930910.6995473-CDS-H-elongata_contig55955:935..17091622930910.6995473-CDS-H-elongata_contig55955:935..1709Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55955 936..1709 +
1691679621.2175705-CDS-H-elongata_contig55955:935..17091691679621.2175705-CDS-H-elongata_contig55955:935..1709Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55955 936..1709 +
1622930910.7134778-CDS-H-elongata_contig55955:1751..19911622930910.7134778-CDS-H-elongata_contig55955:1751..1991Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55955 1752..1991 +
1691679621.2252707-CDS-H-elongata_contig55955:1751..19911691679621.2252707-CDS-H-elongata_contig55955:1751..1991Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55955 1752..1991 +
1622930910.724976-CDS-H-elongata_contig55955:2616..28921622930910.724976-CDS-H-elongata_contig55955:2616..2892Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55955 2617..2892 +
1691679621.232953-CDS-H-elongata_contig55955:2616..28921691679621.232953-CDS-H-elongata_contig55955:2616..2892Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55955 2617..2892 +
1622930910.7394705-CDS-H-elongata_contig55955:3436..35651622930910.7394705-CDS-H-elongata_contig55955:3436..3565Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55955 3437..3565 +
1691679621.2408097-CDS-H-elongata_contig55955:3436..35651691679621.2408097-CDS-H-elongata_contig55955:3436..3565Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55955 3437..3565 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig55955.13025.1

>prot_H-elongata_contig55955.13025.1 ID=prot_H-elongata_contig55955.13025.1|Name=mRNA_H-elongata_contig55955.13025.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=473bp
MDLRQAVRPRGERTCRGKGRKTPTPMLTLGRSYDQFSEDLRILPVDHSAV
SRLRQRARAEAAAADAGAAVATAAAVVQEAERGSRGCTGGGIACGRWVAQ
DRARAERKSLSVARLAVSSVQACGGGGGGGGYCGSKRRNESISREGSNSS
IRSNSSSSRSSNASVDSPSDGSVSDASYGISGGMRGGGVGAGKREFLSGN
SERKPEVGRAEKAAGCHPMARRRRYTSQPMTPGVQQRPRRLAMPPGQTPA
EVGRVSRVPATAAVECKSLLRGRSMTREAQGDVVSEGEGENGSPQAAFPH
RKAAVGPEHQVVIPPLLSEEEQAAYREELDKGELGGTQVWASIRDWKEED
KSRLDEYLWQAKRSMEAKRFMPGVPAAINIGNGGDRRRKRRMAWAVASAG
ANTEPPGKVSVRCSGKDLVEVSKEAVQPFQVEEMALHAWMQTKDLNDFGS
ALSVLEAQADDSGPLATWTKTQV
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mRNA from alignment at H-elongata_contig55955:936..3565+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig55955.13025.1 ID=mRNA_H-elongata_contig55955.13025.1|Name=mRNA_H-elongata_contig55955.13025.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2630bp|location=Sequence derived from alignment at H-elongata_contig55955:936..3565+ (Himanthalia elongata Himel1 dioecious)
ATGGACCTGCGCCAAGCCGTGCGCCCTCGGGGTGAGCGGACATGCAGAGG
GAAGGGGCGAAAAACGCCGACTCCGATGCTGACCCTCGGGAGAAGTTATG
ATCAGTTTTCGGAAGACCTTCGGATTTTACCGGTTGACCACTCTGCCGTA
TCACGGCTTAGACAGAGAGCCCGGGCCGAGGCTGCTGCTGCTGATGCTGG
GGCGGCGGTAGCGACAGCGGCGGCTGTGGTTCAGGAGGCCGAGCGGGGTT
CGAGGGGATGTACCGGTGGGGGCATCGCTTGCGGAAGGTGGGTGGCTCAG
GACAGAGCCAGAGCAGAGCGCAAGAGCCTGAGCGTCGCGCGATTGGCGGT
CTCAAGCGTTCAGGCTTGCGGAGGCGGCGGGGGTGGTGGCGGCTACTGTG
GGAGCAAGAGGAGAAACGAAAGCATTAGCAGAGAAGGGAGCAACAGTAGC
ATCCGCAGTAATAGCAGCAGCAGCAGAAGCAGCAATGCTAGCGTAGACAG
TCCCAGCGACGGCAGCGTCAGCGACGCGAGCTACGGTATTAGTGGTGGCA
TGAGGGGTGGAGGAGTTGGAGCAGGAAAGAGGGAATTCTTGAGCGGGAAC
AGCGAGAGAAAGCCAGAGGTGGGGCGGGCGGAGAAAGCGGCGGGATGCCA
TCCCATGGCTCGCCGGAGACGGTATACGAGCCAGCCAATGACTCCGGGGG
TGCAGCAGCGCCCGCGGCGTCTGGCCATGCCTCCCGGCCAGACTCCGGCG
GAGGTCGGACGGGTTTCCAGGGTAGTAAGCGGCGTGAAGCTAAGCAAGCC
GAGACGGTTGACGAAGCCCGCGACCGCCGCGGTCGAGTGCAAGTCTTTGC
TGCGAGGCAGGTCGATGACCCGAGAGGCGCAGGGAGATGTGGTGTCGGAG
GGAGAGGGCGAGAATGGGTCTCCGCAAGCGGCGTTCCCTCATCGAAAGGC
GGCGGTGGGACCTGAGCACCAGGTGGTCATCCCACCTCTGCTGTCGGAGG
AGGAGCAAGCGGCGTATCGCGAGGAGCTGGACAAAGGGGAGTTGGGCGGC
ACACAGGTTAGCGGTGGTTCGGTCGCTTCGCTCTCCGAGGGGTGTCTTGG
TGGCTGCCTTTTTTTTCTTCTATGTGGCATCTGCGCAAACGGAGTCGATG
ATGATAAAATGGTTATCTAGTATTTTTCCTCTTCTTTTTTTCCTCCGTTT
TTTTTCTTCTTTTTTTTCCAGTTTTTGTTTTCAGTTTTTTCAGTTTTCGA
TTTTCGTTTTTTTTTGTTTACTTCGAAAGAATAACGGGTGATGTTATATG
TGACTGCTGCTGCTGCTGGCAACGTTGGGATATCTATTTCTCAACCTCAT
GTCCCACCACGATCCCATCTCACAAGTCTCGTCTCGGGCGCGTCCCGCGT
GCCACGTGGTCGTGCAACACCTCACGTACCAATAATGAACCATTTGTGAA
GATTTTTTACTCAAGGTTAGTATTGTACACATTCGAACCTGACGATAGTT
GGTCCACCGCTCATGGTGCTAAGAAGGCGTGGATGTTCGGAAGGTTGGAA
TGAGTTCAAGTTTTTTTTTTAATAAAAATAATGCGGCCCCGTGATCGTCG
TGTGCGGCGGACGACTCGCCGCCTCCCGCGGTGTCCCTCCGTCCATGACC
CATTTCGTGTCCCCTCTACACCCCCCTCTAGGTTTGGGCCAGCATCCGCG
ACTGGAAGGAGGAGGACAAGAGTCGATTGGACGAGTATCTCTGGCAAGCC
AAGCGATCCATGGAGGCAAAGAGGTTCATGCCGGGCGTGCCGGCCGCAAT
AAACATCGGCAACGGCGGGGACAGGCGCAGGAAGCGGAGGATGGCGTGGG
CGGTTGCCTCTGCGGGTGCCAACACCGAGCCTCCGGGAAAGGTGTCTGTG
AGGTGCTCCGGGAAAGACCTGGTCGAGGTTTCCAAGGAGGCGGTTCAACC
GTTTCAGGTTCGGCTTGTAGACTCAAAATGAATCGAAACTCGTCTAAGAT
AATTGTGTCGTTGTGGGTGAGGGATTTTCGCGTGTATTCTTTTTTGTGGG
TGTTTGTAGAATATTTTTGAGGTTTTCTCGGGAGGGGGGGAGGGAGGCCC
AGCCGTGTCCAGTTCAGCACGTTTTGTGTGCACAGCGAAATAGTTGTATG
CTTTAGTATCTTTATTAAAAAATAACTTGAACCGATTCCAACCCTCCGAA
CATCCACCCTTTCTTAGCGCCGTGGGAGGTGCAGTCCAGAGGACTATCGT
CAGGTTCGAATGTGTTCATTATCGCCTTTGAGCACAAAATCGTCACATGT
GATTAAGTTCTAACTTGCGCGTGTTCCCAGCGGAGCGCGGCGGGTATTGG
CGGTGTCTAGGCTTCAAAAGATATCCACGGAATTCCAAACGTGGAAGGAT
GTCTACCAGTCAGCGAGGTGTCTTGACCCGACGCGGCTCTTGACGGCGAC
CCTTCTCGCGGGGCTCTTTGAAAATACTCGTTTTATTTCGTGGCGATGTA
GGTGGAGGAGATGGCTCTCCACGCATGGATGCAAACCAAGGACCTCAATG
ATTTTGGCTCCGCGCTTAGTGTCCTCGAGGCCCAAGCGGACGACTCAGGT
CCTCTAGCTACTTGGACGAAAACGCAGGTA
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Coding sequence (CDS) from alignment at H-elongata_contig55955:936..3565+

>mRNA_H-elongata_contig55955.13025.1 ID=mRNA_H-elongata_contig55955.13025.1|Name=mRNA_H-elongata_contig55955.13025.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2838bp|location=Sequence derived from alignment at H-elongata_contig55955:936..3565+ (Himanthalia elongata Himel1 dioecious)
ATGGACCTGCGCCAAGCCGTGCGCCCTCGGGGTGAGCGGACATGCAGAGG
GAAGGGGCGAAAAACGCCGACTCCGATGCTGACCCTCGGGAGAAGTTATG
ATCAGTTTTCGGAAGACCTTCGGATTTTACCGGTTGACCACTCTGCCGTA
TCACGGCTTAGACAGAGAGCCCGGGCCGAGGCTGCTGCTGCTGATGCTGG
GGCGGCGGTAGCGACAGCGGCGGCTGTGGTTCAGGAGGCCGAGCGGGGTT
CGAGGGGATGTACCGGTGGGGGCATCGCTTGCGGAAGGTGGGTGGCTCAG
GACAGAGCCAGAGCAGAGCGCAAGAGCCTGAGCGTCGCGCGATTGGCGGT
CTCAAGCGTTCAGGCTTGCGGAGGCGGCGGGGGTGGTGGCGGCTACTGTG
GGAGCAAGAGGAGAAACGAAAGCATTAGCAGAGAAGGGAGCAACAGTAGC
ATCCGCAGTAATAGCAGCAGCAGCAGAAGCAGCAATGCTAGCGTAGACAG
TCCCAGCGACGGCAGCGTCAGCGACGCGAGCTACGGTATTAGTGGTGGCA
TGAGGGGTGGAGGAGTTGGAGCAGGAAAGAGGGAATTCTTGAGCGGGAAC
AGCGAGAGAAAGCCAGAGGTGGGGCGGGCGGAGAAAGCGGCGGGATGCCA
TCCCATGGCTCGCCGGAGACGGTATACGAGCCAGCCAATGACTCCGGGGG
TGCAGCAGCGCCCGCGGCGTCTGGCCATGCCTCCCGGCCAGACTCCGGCG
GAGGTCGGACGGGTTTCCAGGGTAATGGACCTGCGCCAAGCCGTGCGCCC
TCGGGGTGAGCGGACATGCAGAGGGAAGGGGCGAAAAACGCCGACTCCGA
TGCTGACCCTCGGGAGAAGTTATGATCAGTTTTCGGAAGACCTTCGGATT
TTACCGGTTGACCACTCTGCCGTATCACGGCTTAGACAGAGAGCCCGGGC
CGAGGCTGCTGCTGCTGATGCTGGGGCGGCGGTAGCGACAGCGGCGGCTG
TGGTTCAGGAGGCCGAGCGGGGTTCGAGGGGATGTACCGGTGGGGGCATC
GCTTGCGGAAGGTGGGTGGCTCAGGACAGAGCCAGAGCAGAGCGCAAGAG
CCTGAGCGTCGCGCGATTGGCGGTCTCAAGCGTTCAGGCTTGCGGAGGCG
GCGGGGGTGGTGGCGGCTACTGTGGGAGCAAGAGGAGAAACGAAAGCATT
AGCAGAGAAGGGAGCAACAGTAGCATCCGCAGTAATAGCAGCAGCAGCAG
AAGCAGCAATGCTAGCGTAGACAGTCCCAGCGACGGCAGCGTCAGCGACG
CGAGCTACGGTATTAGTGGTGGCATGAGGGGTGGAGGAGTTGGAGCAGGA
AAGAGGGAATTCTTGAGCGGGAACAGCGAGAGAAAGCCAGAGGTGGGGCG
GGCGGAGAAAGCGGCGGGATGCCATCCCATGGCTCGCCGGAGACGGTATA
CGAGCCAGCCAATGACTCCGGGGGTGCAGCAGCGCCCGCGGCGTCTGGCC
ATGCCTCCCGGCCAGACTCCGGCGGAGGTCGGACGGGTTTCCAGGGTACC
CGCGACCGCCGCGGTCGAGTGCAAGTCTTTGCTGCGAGGCAGGTCGATGA
CCCGAGAGGCGCAGGGAGATGTGGTGTCGGAGGGAGAGGGCGAGAATGGG
TCTCCGCAAGCGGCGTTCCCTCATCGAAAGGCGGCGGTGGGACCTGAGCA
CCAGGTGGTCATCCCACCTCTGCTGTCGGAGGAGGAGCAAGCGGCGTATC
GCGAGGAGCTGGACAAAGGGGAGTTGGGCGGCACACAGCCCGCGACCGCC
GCGGTCGAGTGCAAGTCTTTGCTGCGAGGCAGGTCGATGACCCGAGAGGC
GCAGGGAGATGTGGTGTCGGAGGGAGAGGGCGAGAATGGGTCTCCGCAAG
CGGCGTTCCCTCATCGAAAGGCGGCGGTGGGACCTGAGCACCAGGTGGTC
ATCCCACCTCTGCTGTCGGAGGAGGAGCAAGCGGCGTATCGCGAGGAGCT
GGACAAAGGGGAGTTGGGCGGCACACAGGTTTGGGCCAGCATCCGCGACT
GGAAGGAGGAGGACAAGAGTCGATTGGACGAGTATCTCTGGCAAGCCAAG
CGATCCATGGAGGCAAAGAGGTTCATGCCGGGCGTGCCGGCCGCAATAAA
CATCGGCAACGGCGGGGACAGGCGCAGGAAGCGGAGGATGGCGTGGGCGG
TTGCCTCTGCGGGTGCCAACACCGAGCCTCCGGGAAAGGTGTCTGTGAGG
TGCTCCGGGAAAGACCTGGTCGAGGTTTCCAAGGAGGCGGTTCAACCGTT
TCAGGTTTGGGCCAGCATCCGCGACTGGAAGGAGGAGGACAAGAGTCGAT
TGGACGAGTATCTCTGGCAAGCCAAGCGATCCATGGAGGCAAAGAGGTTC
ATGCCGGGCGTGCCGGCCGCAATAAACATCGGCAACGGCGGGGACAGGCG
CAGGAAGCGGAGGATGGCGTGGGCGGTTGCCTCTGCGGGTGCCAACACCG
AGCCTCCGGGAAAGGTGTCTGTGAGGTGCTCCGGGAAAGACCTGGTCGAG
GTTTCCAAGGAGGCGGTTCAACCGTTTCAGGTGGAGGAGATGGCTCTCCA
CGCATGGATGCAAACCAAGGACCTCAATGATTTTGGCTCCGCGCTTAGTG
TCCTCGAGGCCCAAGCGGACGACTCAGGTCCTCTAGCTACTTGGACGAAA
ACGCAGGTAGTGGAGGAGATGGCTCTCCACGCATGGATGCAAACCAAGGA
CCTCAATGATTTTGGCTCCGCGCTTAGTGTCCTCGAGGCCCAAGCGGACG
ACTCAGGTCCTCTAGCTACTTGGACGAAAACGCAGGTA
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