prot_H-elongata_contig55955.13025.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig55955.13025.1
Unique Nameprot_H-elongata_contig55955.13025.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length473
Homology
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BLAST of mRNA_H-elongata_contig55955.13025.1 vs. uniprot
Match: D7G9E6_ECTSI (ELM2 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9E6_ECTSI)

HSP 1 Score: 170 bits (431), Expect = 9.550e-43
Identity = 109/251 (43.43%), Postives = 149/251 (59.36%), Query Frame = 0 
Query:  237 RPRRLAMPPGQTPAEVGRV--SRVPATAAVECKSLLRGRSMTREAQGDVVSEGEGENGSPQAAFPHRKAAVGPEHQVVIPP-LLSEEEQAAYREELDK-GELGGTQVWASIRDWKEEDKSRLDEYLWQAKRSMEAKRFMPGVPAAINIGNGGDRRRKRRMAWAVASAGANTEPPGKVSVRCSGKDLVEVSKEAVQPFQVEEMALHAWMQTKDLNDFG---------SALSVLE-AQADDSGPLATWTKTQV 473
            RPRRLAMPP  +   +G    +RV      +C+  LR   + R A     SE +G +      +P ++  VG +HQ  IP  LL+E E+AA +  +++  E+GGT VW+S+RDW   ++ RLD YL +A+R+ + KR  PGVPA I+I NGGDRRRKR+MAWAV  AG   E   K+ V C+G  + EVS+  +QP QVEE+A+ A MQ    N  G         +AL +L+    DDSGPLATWT  Q+
Sbjct:  188 RPRRLAMPPADSATGLGGGGGARVEEAGGRKCQQQLRSGLLIRAAHAGEESE-DGLDSPKLEQYPQKETNVGEDHQADIPSMLLTEAERAADKAAMEETAEMGGTAVWSSVRDWTASERERLDGYLEEARRAADEKRMSPGVPALISINNGGDRRRKRKMAWAVM-AGGKPEDEEKLRVGCAGGGVSEVSRRELQPTQVEELAMQALMQEDAGNKKGKGSLMDNTRTALGLLDNTMVDDSGPLATWTGPQI 436
[Close]
BLAST of mRNA_H-elongata_contig55955.13025.1 vs. uniprot
Match: A0A6H5K2H5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2H5_9PHAE)

HSP 1 Score: 165 bits (418), Expect = 2.720e-40
Identity = 107/251 (42.63%), Postives = 148/251 (58.96%), Query Frame = 0 
Query:  237 RPRRLAMPPGQTPAEVGRVS--RVPATAAVECKSLLRGRSMTREAQGDVVSEGEGENGSPQAAFPHRKAAVGPEHQVVIPP-LLSEEEQAAYREELDKG-ELGGTQVWASIRDWKEEDKSRLDEYLWQAKRSMEAKRFMPGVPAAINIGNGGDRRRKRRMAWAVASAGANTEPPGKVSVRCSGKDLVEVSKEAVQPFQVEEMALHAWMQTKDLNDFG---------SALSVLE-AQADDSGPLATWTKTQV 473
            RPRRLAMPP  +   +G     RV      +C+  LRG  + R A     S  +G +      +P ++  VG +HQ  IP  LL+E E+AA +  +++  E+GGT VW+S+RDW   ++ RLD YL +A+R+ + KR  PGVPA I+I NGGDRRRKR++AWAV  AG   E   K+ V C+G  + EVS+  +QP QVEE+A+ A M+    N  G         +AL +L+    DDSGPLATWT  Q+
Sbjct:  339 RPRRLAMPPADSATGLGDGGSVRVEEARGTKCQQQLRGGLLIRAAHPGEESA-DGLDSPKLEQYPQKETNVGIDHQADIPSMLLTEAERAADKAAMEETLEMGGTAVWSSVRDWTASERERLDGYLEEARRAADEKRMSPGVPALISINNGGDRRRKRKIAWAVM-AGGKPEDKEKLLVTCAGGGVSEVSRSELQPTQVEELAMQALMREDAGNKKGKGSLIDNARTALGLLDNTMVDDSGPLATWTGPQI 587
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig55955.13025.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G9E6_ECTSI9.550e-4343.43ELM2 domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5K2H5_9PHAE2.720e-4042.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000949ELM2 domainSMARTSM01189ELM2_2coord: 303..366
e-value: 1.0E-5
score: 35.0
IPR000949ELM2 domainPFAMPF01448ELM2coord: 305..362
e-value: 3.0E-4
score: 21.5

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig55955contigH-elongata_contig55955:936..3565 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig55955.13025.1mRNA_H-elongata_contig55955.13025.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig55955 936..3565 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig55955.13025.1 ID=prot_H-elongata_contig55955.13025.1|Name=mRNA_H-elongata_contig55955.13025.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=473bp
MDLRQAVRPRGERTCRGKGRKTPTPMLTLGRSYDQFSEDLRILPVDHSAV
SRLRQRARAEAAAADAGAAVATAAAVVQEAERGSRGCTGGGIACGRWVAQ
DRARAERKSLSVARLAVSSVQACGGGGGGGGYCGSKRRNESISREGSNSS
IRSNSSSSRSSNASVDSPSDGSVSDASYGISGGMRGGGVGAGKREFLSGN
SERKPEVGRAEKAAGCHPMARRRRYTSQPMTPGVQQRPRRLAMPPGQTPA
EVGRVSRVPATAAVECKSLLRGRSMTREAQGDVVSEGEGENGSPQAAFPH
RKAAVGPEHQVVIPPLLSEEEQAAYREELDKGELGGTQVWASIRDWKEED
KSRLDEYLWQAKRSMEAKRFMPGVPAAINIGNGGDRRRKRRMAWAVASAG
ANTEPPGKVSVRCSGKDLVEVSKEAVQPFQVEEMALHAWMQTKDLNDFGS
ALSVLEAQADDSGPLATWTKTQV
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000949ELM2_dom