mRNA_H-elongata_contig55900.13019.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig55900.13019.1
Unique NamemRNA_H-elongata_contig55900.13019.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig55900.13019.1 vs. uniprot
Match: A0A7S2V2V8_9STRA (Pre-mRNA-splicing factor 38 (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V2V8_9STRA)

HSP 1 Score: 169 bits (428), Expect = 6.480e-52
Identity = 74/94 (78.72%), Postives = 88/94 (93.62%), Query Frame = 1 
Query:    1 DPLARTVHGTNPQNLIEKITRQKIYNNLYWKEHCFGLTAETLVDKAMMLTHLGGSFGGNQQPTKFLCLVLKMLQIQPEKEIVIEFIKNEDYKYV 282
            DPLARTVHGTNPQNL+EKI R KIY ++YWKEHCFGL+AETL+DKAM L H+GG++GGN++P+KFLCL+LKMLQ+QPEKEIVIE IKNEDYKY+
Sbjct:   12 DPLARTVHGTNPQNLVEKILRMKIYGSIYWKEHCFGLSAETLIDKAMDLGHVGGTYGGNRKPSKFLCLILKMLQLQPEKEIVIELIKNEDYKYI 105
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BLAST of mRNA_H-elongata_contig55900.13019.1 vs. uniprot
Match: A0A0V0GSG3_SOLCH (Pre-mRNA-splicing factor 38 (Fragment) n=1 Tax=Solanum chacoense TaxID=4108 RepID=A0A0V0GSG3_SOLCH)

HSP 1 Score: 164 bits (415), Expect = 3.520e-50
Identity = 73/94 (77.66%), Postives = 85/94 (90.43%), Query Frame = 1 
Query:    1 DPLARTVHGTNPQNLIEKITRQKIYNNLYWKEHCFGLTAETLVDKAMMLTHLGGSFGGNQQPTKFLCLVLKMLQIQPEKEIVIEFIKNEDYKYV 282
            DPLA+++ GTNPQNL+EKI R KIY N YWKE CFGLTAETLVDKAM L HLGG+FGGN++P+ F+CLV+KMLQIQPEK+IV+EFIKNEDYKYV
Sbjct:    6 DPLAKSIRGTNPQNLVEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDHLGGTFGGNRKPSPFICLVMKMLQIQPEKDIVVEFIKNEDYKYV 99
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BLAST of mRNA_H-elongata_contig55900.13019.1 vs. uniprot
Match: A0A1Q3D6I5_CEPFO (Pre-mRNA-splicing factor 38 (Fragment) n=1 Tax=Cephalotus follicularis TaxID=3775 RepID=A0A1Q3D6I5_CEPFO)

HSP 1 Score: 170 bits (430), Expect = 5.600e-50
Identity = 77/94 (81.91%), Postives = 86/94 (91.49%), Query Frame = 1 
Query:    1 DPLARTVHGTNPQNLIEKITRQKIYNNLYWKEHCFGLTAETLVDKAMMLTHLGGSFGGNQQPTKFLCLVLKMLQIQPEKEIVIEFIKNEDYKYV 282
            DP+A+++HGTNPQNLIEKI R KIY N YWKE CFGLTAETLVDKAM L HLGG+FGGN++PT F+CLV+KMLQIQPEKEIVIEFIKNEDYKYV
Sbjct:    6 DPMAKSIHGTNPQNLIEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDHLGGTFGGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDYKYV 99
[Close]
BLAST of mRNA_H-elongata_contig55900.13019.1 vs. uniprot
Match: A0A392QKP4_9FABA (Pre-mRNA-splicing factor 38 (Fragment) n=1 Tax=Trifolium medium TaxID=97028 RepID=A0A392QKP4_9FABA)

HSP 1 Score: 163 bits (412), Expect = 5.720e-50
Identity = 73/94 (77.66%), Postives = 84/94 (89.36%), Query Frame = 1 
Query:    1 DPLARTVHGTNPQNLIEKITRQKIYNNLYWKEHCFGLTAETLVDKAMMLTHLGGSFGGNQQPTKFLCLVLKMLQIQPEKEIVIEFIKNEDYKYV 282
            DP A+++ GTNPQNL+EKI R KIY N YWKE CFGLTAETLVDKAM L HLGG++GGN++PT F+CLV+KMLQIQPEKEIVIEFIKN+DYKYV
Sbjct:    9 DPAAKSIRGTNPQNLVEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDHLGGTYGGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNDDYKYV 102
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BLAST of mRNA_H-elongata_contig55900.13019.1 vs. uniprot
Match: A0A835Q3Q8_VANPL (Pre-mRNA-splicing factor 38 n=1 Tax=Vanilla planifolia TaxID=51239 RepID=A0A835Q3Q8_VANPL)

HSP 1 Score: 168 bits (425), Expect = 6.070e-50
Identity = 75/94 (79.79%), Postives = 85/94 (90.43%), Query Frame = 1 
Query:    1 DPLARTVHGTNPQNLIEKITRQKIYNNLYWKEHCFGLTAETLVDKAMMLTHLGGSFGGNQQPTKFLCLVLKMLQIQPEKEIVIEFIKNEDYKYV 282
            DP A+++HGTNPQNL+EKI R KIY N YWKE CFGLTAETLVDKAM L HLGG+FGGN++PT FLCLV+KMLQIQPEKEIV+EFIKN+DYKYV
Sbjct:    6 DPAAKSIHGTNPQNLVEKIVRSKIYQNTYWKEQCFGLTAETLVDKAMELDHLGGTFGGNRKPTPFLCLVMKMLQIQPEKEIVVEFIKNDDYKYV 99
[Close]
BLAST of mRNA_H-elongata_contig55900.13019.1 vs. uniprot
Match: A0A6P5GTV5_ANACO (Pre-mRNA-splicing factor 38 n=1 Tax=Ananas comosus TaxID=4615 RepID=A0A6P5GTV5_ANACO)

HSP 1 Score: 166 bits (421), Expect = 9.880e-50
Identity = 74/94 (78.72%), Postives = 85/94 (90.43%), Query Frame = 1 
Query:    1 DPLARTVHGTNPQNLIEKITRQKIYNNLYWKEHCFGLTAETLVDKAMMLTHLGGSFGGNQQPTKFLCLVLKMLQIQPEKEIVIEFIKNEDYKYV 282
            DP A+++HGTNPQNL+EKI R KIY N YWKE CFGLTAETLVDKAM L HLGG+FGGN++PT F+CLV+KMLQIQPEK+IV+EFIKNEDYKYV
Sbjct:    6 DPSAKSIHGTNPQNLVEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDHLGGTFGGNRKPTPFMCLVMKMLQIQPEKDIVVEFIKNEDYKYV 99
[Close]
BLAST of mRNA_H-elongata_contig55900.13019.1 vs. uniprot
Match: A0A3Q7EQ21_SOLLC (Pre-mRNA-splicing factor 38 n=1 Tax=Solanum lycopersicum TaxID=4081 RepID=A0A3Q7EQ21_SOLLC)

HSP 1 Score: 164 bits (415), Expect = 1.240e-49
Identity = 73/94 (77.66%), Postives = 85/94 (90.43%), Query Frame = 1 
Query:    1 DPLARTVHGTNPQNLIEKITRQKIYNNLYWKEHCFGLTAETLVDKAMMLTHLGGSFGGNQQPTKFLCLVLKMLQIQPEKEIVIEFIKNEDYKYV 282
            DPLA+++ GTNPQNL+EKI R KIY N YWKE CFGLTAETLVDKAM L HLGG+FGGN++P+ F+CLV+KMLQIQPEK+IV+EFIKNEDYKYV
Sbjct:    6 DPLAKSIRGTNPQNLVEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDHLGGTFGGNRKPSPFICLVMKMLQIQPEKDIVVEFIKNEDYKYV 99
[Close]
BLAST of mRNA_H-elongata_contig55900.13019.1 vs. uniprot
Match: A0A2P2K250_RHIMU (Pre-mRNA-splicing factor 38 n=1 Tax=Rhizophora mucronata TaxID=61149 RepID=A0A2P2K250_RHIMU)

HSP 1 Score: 161 bits (407), Expect = 1.290e-49
Identity = 71/93 (76.34%), Postives = 83/93 (89.25%), Query Frame = 1 
Query:    1 DPLARTVHGTNPQNLIEKITRQKIYNNLYWKEHCFGLTAETLVDKAMMLTHLGGSFGGNQQPTKFLCLVLKMLQIQPEKEIVIEFIKNEDYKY 279
            DP A+++ GTNPQNL+EKI R KIY N YWKE CFGLTAETLVDKAM L HLGG+FGGN++PT F+CLV+KMLQIQPEK+IV+EFIKN+DYKY
Sbjct:    6 DPAAKSIRGTNPQNLVEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDHLGGTFGGNRKPTPFMCLVMKMLQIQPEKDIVVEFIKNDDYKY 98
[Close]
BLAST of mRNA_H-elongata_contig55900.13019.1 vs. uniprot
Match: A0A1D1Z5H8_9ARAE (Pre-mRNA-splicing factor 38 (Fragment) n=1 Tax=Anthurium amnicola TaxID=1678845 RepID=A0A1D1Z5H8_9ARAE)

HSP 1 Score: 167 bits (423), Expect = 1.670e-49
Identity = 75/94 (79.79%), Postives = 85/94 (90.43%), Query Frame = 1 
Query:    1 DPLARTVHGTNPQNLIEKITRQKIYNNLYWKEHCFGLTAETLVDKAMMLTHLGGSFGGNQQPTKFLCLVLKMLQIQPEKEIVIEFIKNEDYKYV 282
            DP A+++HGTNPQNL+EKI R KIY N YWKE CFGLTAETLVDKAM L HLGG+FGGN++PT F+CLVLKMLQIQPEK+IV+EFIKNEDYKYV
Sbjct:    6 DPSAKSIHGTNPQNLVEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDHLGGTFGGNRKPTPFMCLVLKMLQIQPEKDIVVEFIKNEDYKYV 99
[Close]
BLAST of mRNA_H-elongata_contig55900.13019.1 vs. uniprot
Match: A0A8J4VAS4_9ROSI (Pre-mRNA-splicing factor 38 n=1 Tax=Castanea mollissima TaxID=60419 RepID=A0A8J4VAS4_9ROSI)

HSP 1 Score: 161 bits (407), Expect = 2.340e-49
Identity = 73/93 (78.49%), Postives = 82/93 (88.17%), Query Frame = 1 
Query:    1 DPLARTVHGTNPQNLIEKITRQKIYNNLYWKEHCFGLTAETLVDKAMMLTHLGGSFGGNQQPTKFLCLVLKMLQIQPEKEIVIEFIKNEDYKY 279
            DP A+++ GTNPQNL+EKI R KIY N YWKE CFGLTAETLVDKAM L HLGGS GGN++PT F+CLV+KMLQIQPEKEIVIEFIKN+DYKY
Sbjct:    6 DPAAKSIRGTNPQNLLEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELNHLGGSHGGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNDDYKY 98
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig55900.13019.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S2V2V8_9STRA6.480e-5278.72Pre-mRNA-splicing factor 38 (Fragment) n=1 Tax=Fib... [more]
A0A0V0GSG3_SOLCH3.520e-5077.66Pre-mRNA-splicing factor 38 (Fragment) n=1 Tax=Sol... [more]
A0A1Q3D6I5_CEPFO5.600e-5081.91Pre-mRNA-splicing factor 38 (Fragment) n=1 Tax=Cep... [more]
A0A392QKP4_9FABA5.720e-5077.66Pre-mRNA-splicing factor 38 (Fragment) n=1 Tax=Tri... [more]
A0A835Q3Q8_VANPL6.070e-5079.79Pre-mRNA-splicing factor 38 n=1 Tax=Vanilla planif... [more]
A0A6P5GTV5_ANACO9.880e-5078.72Pre-mRNA-splicing factor 38 n=1 Tax=Ananas comosus... [more]
A0A3Q7EQ21_SOLLC1.240e-4977.66Pre-mRNA-splicing factor 38 n=1 Tax=Solanum lycope... [more]
A0A2P2K250_RHIMU1.290e-4976.34Pre-mRNA-splicing factor 38 n=1 Tax=Rhizophora muc... [more]
A0A1D1Z5H8_9ARAE1.670e-4979.79Pre-mRNA-splicing factor 38 (Fragment) n=1 Tax=Ant... [more]
A0A8J4VAS4_9ROSI2.340e-4978.49Pre-mRNA-splicing factor 38 n=1 Tax=Castanea molli... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig55900contigH-elongata_contig55900:605..2553 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score166.0
Seed ortholog evalue8.4e-39
Seed eggNOG ortholog71139.XP_010024095.1
KEGG koko:K12849
KEGG Pathwayko03040,map03040
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005681,GO:0032991,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0071011,GO:1990904
EggNOG free text desc.Pre-mRNA-splicing factor
EggNOG OGs37MJN@33090,3GESM@35493,KOG2889@1,KOG2889@2759
COG Functional cat.BK
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03041
Hectar predicted targeting categoryother localisation
Exons2
Model size282
Cds size282
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930910.1326666-CDS-H-elongata_contig55900:604..8031622930910.1326666-CDS-H-elongata_contig55900:604..803Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55900 605..803 -
1691679620.96282-CDS-H-elongata_contig55900:604..8031691679620.96282-CDS-H-elongata_contig55900:604..803Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55900 605..803 -
1622930910.153528-CDS-H-elongata_contig55900:2470..25531622930910.153528-CDS-H-elongata_contig55900:2470..2553Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55900 2471..2553 -
1691679620.9844637-CDS-H-elongata_contig55900:2470..25531691679620.9844637-CDS-H-elongata_contig55900:2470..2553Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55900 2471..2553 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig55900.13019.1prot_H-elongata_contig55900.13019.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig55900 605..2553 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig55900.13019.1

>prot_H-elongata_contig55900.13019.1 ID=prot_H-elongata_contig55900.13019.1|Name=mRNA_H-elongata_contig55900.13019.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=94bp
DPLARTVHGTNPQNLIEKITRQKIYNNLYWKEHCFGLTAETLVDKAMMLT
HLGGSFGGNQQPTKFLCLVLKMLQIQPEKEIVIEFIKNEDYKYV
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mRNA from alignment at H-elongata_contig55900:605..2553-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig55900.13019.1 ID=mRNA_H-elongata_contig55900.13019.1|Name=mRNA_H-elongata_contig55900.13019.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1949bp|location=Sequence derived from alignment at H-elongata_contig55900:605..2553- (Himanthalia elongata Himel1 dioecious)
GATCCGCTCGCGCGTACCGTTCACGGGACCAACCCTCAGAACCTGATCGA
GAAGATTACACGGCAGAAGATCTACAACAACTTGTAAGTATATTGAAAAT
AGTGAAAATATTGAAAATTAGTGTCGTTCTCGTATTGGTGTAATATTGTT
TTGTTTTGTTTTTTTAATTATTTTTTGGCGGTTTCCGAAACACACAAGAA
AATACCAATAATATCTCCCTGCTCCAGTGCACAAACCCCGTTCTTCTTCG
ACGGAGAATGTGGAAGAGGTGGGGGGGGGGGGGCACCCTTATTCTATCCC
CCGTATGTGACTTCAGCGAATAACGNNNNNNNNNNCTCCTCTTGCCCGCT
ATCAGCACAAGTCTTTTGTTATGGTGGAGGGCTGGGGGAGGGGGGGGGGG
GGGGGGGGGCTCCCTTATTCTATCCCCCGTATGTGACTTCAGCGAATAAC
GGCTGGCCTACGTTTTTATTTATTTATTGTGGAATGACAGCACCCCCGTT
TTATTCAGATCAGATAGAATTGTCACAGCCCCTCGCAAACAGTCGAAGAT
AATTTCTCTTTAATGTCTCGGCGACATTTCTAGCAACATTCACAATCCTC
AAGATCGTGGAACAATCCTCAAGATCGTGGAAGATCTTGGAACGAGATAT
TTCGCGGCACGACACGAGACCAGCGAGGACTAGGACACGAGACGAGCGAG
GACTGTTTACTTTTTACCGTGCGGTTGTCAAATTGTCCGTTTTTTCCTCA
AGCGCGTTTTTAAGGGGTTACAGTGAAATCGCGGGATCGTCCAACATGCG
AAGTTAAGGGGGCAAATGCGGTGCAAAAAAATCTTTCTAGAAATCGTACA
ACATGCGAAGTTACCCCGCAAAATGTCAAAACGGGGCGCTTCTATTTCGG
GCGAGAGTAGCAGTAAATTGTCGAAGTAAGTTATTTTTATTTTAGACTAA
AACACTTTGCATTCAGCGTCGAAGGTATTCGAGCAAGTCAAAGGACCTGT
CGCCTAGGATGGAGTAAGCGGAATCTTGGAGCTGGCGAACGAGCCAAAGG
CATCGGCGTCGGCACTGGTCGAGACCCTTGCTGTGATGTAGGATGAGCTC
GTTTTGATCATCCTCACGTTGCATCTGAAGCGCTCAAGCAAACAAAGGCG
CTATGTAATGTAATGATGCTACAGAGGGATAAAAAGACGGATAAAGATCC
ACGAGTCACATTTACGACAGTAATAGACTGTTGATTCTGGCTATCTCGGC
TCGCTGTGCGTGGAAGCTTGGGGGTTCTATAACATTTTGTGTGTTATTAT
GTTTGTAATCGGTGTTATAGAGATAATTTGTAGTCAACGGCAGAGCGGGG
ATGAAGCAATTTAGACGGAAAATTGTGAAAGCGTCATAGTTAATTTATTT
TCGTCAGATCTGTAAAATATCGTGGGTGTCCATGAGTTTTACTGTTAGTT
GCCTTTTCACTTCAATACGTGTGCGTATTGCGGAGCCCCGTACAGAACTC
TATATCCAATACATGGAAAAAACACCCAAACATATATATATATATATATA
TAAAGAGGGCAATCCTTCATGAACGACAGAGAAATTAGGGGACAAGAAGT
TTACGTCCCCGGGTTTTGAATCACTTATTACGTCACCTTTTGTACTACAG
CATATTTTAATGTTGATATTAATATAGTAAAGTCAAGATATCAACCTTCC
CCTTAGCCTTTTAACCTTAAAAACACCAAAAACTATGAAATACAAATAAG
GTACTGGAAGGAGCATTGCTTTGGCCTCACGGCCGAGACTCTCGTCGACA
AGGCCATGATGCTCACTCACCTGGGGGGCTCCTTCGGCGGGAACCAGCAG
CCCACGAAGTTCCTGTGCCTGGTGCTAAAGATGCTGCAGATACAGCCCGA
GAAAGAAATCGTGATCGAGTTCATCAAGAACGAGGACTATAAGTACGTC
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Coding sequence (CDS) from alignment at H-elongata_contig55900:605..2553-

>mRNA_H-elongata_contig55900.13019.1 ID=mRNA_H-elongata_contig55900.13019.1|Name=mRNA_H-elongata_contig55900.13019.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=564bp|location=Sequence derived from alignment at H-elongata_contig55900:605..2553- (Himanthalia elongata Himel1 dioecious)
GATCCGCTCGCGCGTACCGTTCACGGGACCAACCCTCAGAACCTGATCGA
GAAGATTACACGGCAGAAGATCTACAACAACTTGATCCGCTCGCGCGTAC
CGTTCACGGGACCAACCCTCAGAACCTGATCGAGAAGATTACACGGCAGA
AGATCTACAACAACTTGTACTGGAAGGAGCATTGCTTTGGCCTCACGGCC
GAGACTCTCGTCGACAAGGCCATGATGCTCACTCACCTGGGGGGCTCCTT
CGGCGGGAACCAGCAGCCCACGAAGTTCCTGTGCCTGGTGCTAAAGATGC
TGCAGATACAGCCCGAGAAAGAAATCGTGATCGAGTTCATCAAGAACGAG
GACTATAAGTACGTCGTACTGGAAGGAGCATTGCTTTGGCCTCACGGCCG
AGACTCTCGTCGACAAGGCCATGATGCTCACTCACCTGGGGGGCTCCTTC
GGCGGGAACCAGCAGCCCACGAAGTTCCTGTGCCTGGTGCTAAAGATGCT
GCAGATACAGCCCGAGAAAGAAATCGTGATCGAGTTCATCAAGAACGAGG
ACTATAAGTACGTC
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