prot_H-elongata_contig55900.13019.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig55900.13019.1
Unique Nameprot_H-elongata_contig55900.13019.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length94
Homology
BLAST of mRNA_H-elongata_contig55900.13019.1 vs. uniprot
Match: A0A7S2V2V8_9STRA (Pre-mRNA-splicing factor 38 (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V2V8_9STRA)

HSP 1 Score: 169 bits (428), Expect = 6.480e-52
Identity = 74/94 (78.72%), Postives = 88/94 (93.62%), Query Frame = 0
Query:    1 DPLARTVHGTNPQNLIEKITRQKIYNNLYWKEHCFGLTAETLVDKAMMLTHLGGSFGGNQQPTKFLCLVLKMLQIQPEKEIVIEFIKNEDYKYV 94
            DPLARTVHGTNPQNL+EKI R KIY ++YWKEHCFGL+AETL+DKAM L H+GG++GGN++P+KFLCL+LKMLQ+QPEKEIVIE IKNEDYKY+
Sbjct:   12 DPLARTVHGTNPQNLVEKILRMKIYGSIYWKEHCFGLSAETLIDKAMDLGHVGGTYGGNRKPSKFLCLILKMLQLQPEKEIVIELIKNEDYKYI 105          
BLAST of mRNA_H-elongata_contig55900.13019.1 vs. uniprot
Match: A0A0V0GSG3_SOLCH (Pre-mRNA-splicing factor 38 (Fragment) n=1 Tax=Solanum chacoense TaxID=4108 RepID=A0A0V0GSG3_SOLCH)

HSP 1 Score: 164 bits (415), Expect = 3.520e-50
Identity = 73/94 (77.66%), Postives = 85/94 (90.43%), Query Frame = 0
Query:    1 DPLARTVHGTNPQNLIEKITRQKIYNNLYWKEHCFGLTAETLVDKAMMLTHLGGSFGGNQQPTKFLCLVLKMLQIQPEKEIVIEFIKNEDYKYV 94
            DPLA+++ GTNPQNL+EKI R KIY N YWKE CFGLTAETLVDKAM L HLGG+FGGN++P+ F+CLV+KMLQIQPEK+IV+EFIKNEDYKYV
Sbjct:    6 DPLAKSIRGTNPQNLVEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDHLGGTFGGNRKPSPFICLVMKMLQIQPEKDIVVEFIKNEDYKYV 99          
BLAST of mRNA_H-elongata_contig55900.13019.1 vs. uniprot
Match: A0A1Q3D6I5_CEPFO (Pre-mRNA-splicing factor 38 (Fragment) n=1 Tax=Cephalotus follicularis TaxID=3775 RepID=A0A1Q3D6I5_CEPFO)

HSP 1 Score: 170 bits (430), Expect = 5.600e-50
Identity = 77/94 (81.91%), Postives = 86/94 (91.49%), Query Frame = 0
Query:    1 DPLARTVHGTNPQNLIEKITRQKIYNNLYWKEHCFGLTAETLVDKAMMLTHLGGSFGGNQQPTKFLCLVLKMLQIQPEKEIVIEFIKNEDYKYV 94
            DP+A+++HGTNPQNLIEKI R KIY N YWKE CFGLTAETLVDKAM L HLGG+FGGN++PT F+CLV+KMLQIQPEKEIVIEFIKNEDYKYV
Sbjct:    6 DPMAKSIHGTNPQNLIEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDHLGGTFGGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDYKYV 99          
BLAST of mRNA_H-elongata_contig55900.13019.1 vs. uniprot
Match: A0A392QKP4_9FABA (Pre-mRNA-splicing factor 38 (Fragment) n=1 Tax=Trifolium medium TaxID=97028 RepID=A0A392QKP4_9FABA)

HSP 1 Score: 163 bits (412), Expect = 5.720e-50
Identity = 73/94 (77.66%), Postives = 84/94 (89.36%), Query Frame = 0
Query:    1 DPLARTVHGTNPQNLIEKITRQKIYNNLYWKEHCFGLTAETLVDKAMMLTHLGGSFGGNQQPTKFLCLVLKMLQIQPEKEIVIEFIKNEDYKYV 94
            DP A+++ GTNPQNL+EKI R KIY N YWKE CFGLTAETLVDKAM L HLGG++GGN++PT F+CLV+KMLQIQPEKEIVIEFIKN+DYKYV
Sbjct:    9 DPAAKSIRGTNPQNLVEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDHLGGTYGGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNDDYKYV 102          
BLAST of mRNA_H-elongata_contig55900.13019.1 vs. uniprot
Match: A0A835Q3Q8_VANPL (Pre-mRNA-splicing factor 38 n=1 Tax=Vanilla planifolia TaxID=51239 RepID=A0A835Q3Q8_VANPL)

HSP 1 Score: 168 bits (425), Expect = 6.070e-50
Identity = 75/94 (79.79%), Postives = 85/94 (90.43%), Query Frame = 0
Query:    1 DPLARTVHGTNPQNLIEKITRQKIYNNLYWKEHCFGLTAETLVDKAMMLTHLGGSFGGNQQPTKFLCLVLKMLQIQPEKEIVIEFIKNEDYKYV 94
            DP A+++HGTNPQNL+EKI R KIY N YWKE CFGLTAETLVDKAM L HLGG+FGGN++PT FLCLV+KMLQIQPEKEIV+EFIKN+DYKYV
Sbjct:    6 DPAAKSIHGTNPQNLVEKIVRSKIYQNTYWKEQCFGLTAETLVDKAMELDHLGGTFGGNRKPTPFLCLVMKMLQIQPEKEIVVEFIKNDDYKYV 99          
BLAST of mRNA_H-elongata_contig55900.13019.1 vs. uniprot
Match: A0A6P5GTV5_ANACO (Pre-mRNA-splicing factor 38 n=1 Tax=Ananas comosus TaxID=4615 RepID=A0A6P5GTV5_ANACO)

HSP 1 Score: 166 bits (421), Expect = 9.880e-50
Identity = 74/94 (78.72%), Postives = 85/94 (90.43%), Query Frame = 0
Query:    1 DPLARTVHGTNPQNLIEKITRQKIYNNLYWKEHCFGLTAETLVDKAMMLTHLGGSFGGNQQPTKFLCLVLKMLQIQPEKEIVIEFIKNEDYKYV 94
            DP A+++HGTNPQNL+EKI R KIY N YWKE CFGLTAETLVDKAM L HLGG+FGGN++PT F+CLV+KMLQIQPEK+IV+EFIKNEDYKYV
Sbjct:    6 DPSAKSIHGTNPQNLVEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDHLGGTFGGNRKPTPFMCLVMKMLQIQPEKDIVVEFIKNEDYKYV 99          
BLAST of mRNA_H-elongata_contig55900.13019.1 vs. uniprot
Match: A0A3Q7EQ21_SOLLC (Pre-mRNA-splicing factor 38 n=1 Tax=Solanum lycopersicum TaxID=4081 RepID=A0A3Q7EQ21_SOLLC)

HSP 1 Score: 164 bits (415), Expect = 1.240e-49
Identity = 73/94 (77.66%), Postives = 85/94 (90.43%), Query Frame = 0
Query:    1 DPLARTVHGTNPQNLIEKITRQKIYNNLYWKEHCFGLTAETLVDKAMMLTHLGGSFGGNQQPTKFLCLVLKMLQIQPEKEIVIEFIKNEDYKYV 94
            DPLA+++ GTNPQNL+EKI R KIY N YWKE CFGLTAETLVDKAM L HLGG+FGGN++P+ F+CLV+KMLQIQPEK+IV+EFIKNEDYKYV
Sbjct:    6 DPLAKSIRGTNPQNLVEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDHLGGTFGGNRKPSPFICLVMKMLQIQPEKDIVVEFIKNEDYKYV 99          
BLAST of mRNA_H-elongata_contig55900.13019.1 vs. uniprot
Match: A0A2P2K250_RHIMU (Pre-mRNA-splicing factor 38 n=1 Tax=Rhizophora mucronata TaxID=61149 RepID=A0A2P2K250_RHIMU)

HSP 1 Score: 161 bits (407), Expect = 1.290e-49
Identity = 71/93 (76.34%), Postives = 83/93 (89.25%), Query Frame = 0
Query:    1 DPLARTVHGTNPQNLIEKITRQKIYNNLYWKEHCFGLTAETLVDKAMMLTHLGGSFGGNQQPTKFLCLVLKMLQIQPEKEIVIEFIKNEDYKY 93
            DP A+++ GTNPQNL+EKI R KIY N YWKE CFGLTAETLVDKAM L HLGG+FGGN++PT F+CLV+KMLQIQPEK+IV+EFIKN+DYKY
Sbjct:    6 DPAAKSIRGTNPQNLVEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDHLGGTFGGNRKPTPFMCLVMKMLQIQPEKDIVVEFIKNDDYKY 98          
BLAST of mRNA_H-elongata_contig55900.13019.1 vs. uniprot
Match: A0A1D1Z5H8_9ARAE (Pre-mRNA-splicing factor 38 (Fragment) n=1 Tax=Anthurium amnicola TaxID=1678845 RepID=A0A1D1Z5H8_9ARAE)

HSP 1 Score: 167 bits (423), Expect = 1.670e-49
Identity = 75/94 (79.79%), Postives = 85/94 (90.43%), Query Frame = 0
Query:    1 DPLARTVHGTNPQNLIEKITRQKIYNNLYWKEHCFGLTAETLVDKAMMLTHLGGSFGGNQQPTKFLCLVLKMLQIQPEKEIVIEFIKNEDYKYV 94
            DP A+++HGTNPQNL+EKI R KIY N YWKE CFGLTAETLVDKAM L HLGG+FGGN++PT F+CLVLKMLQIQPEK+IV+EFIKNEDYKYV
Sbjct:    6 DPSAKSIHGTNPQNLVEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDHLGGTFGGNRKPTPFMCLVLKMLQIQPEKDIVVEFIKNEDYKYV 99          
BLAST of mRNA_H-elongata_contig55900.13019.1 vs. uniprot
Match: A0A8J4VAS4_9ROSI (Pre-mRNA-splicing factor 38 n=1 Tax=Castanea mollissima TaxID=60419 RepID=A0A8J4VAS4_9ROSI)

HSP 1 Score: 161 bits (407), Expect = 2.340e-49
Identity = 73/93 (78.49%), Postives = 82/93 (88.17%), Query Frame = 0
Query:    1 DPLARTVHGTNPQNLIEKITRQKIYNNLYWKEHCFGLTAETLVDKAMMLTHLGGSFGGNQQPTKFLCLVLKMLQIQPEKEIVIEFIKNEDYKY 93
            DP A+++ GTNPQNL+EKI R KIY N YWKE CFGLTAETLVDKAM L HLGGS GGN++PT F+CLV+KMLQIQPEKEIVIEFIKN+DYKY
Sbjct:    6 DPAAKSIRGTNPQNLLEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELNHLGGSHGGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNDDYKY 98          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig55900.13019.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S2V2V8_9STRA6.480e-5278.72Pre-mRNA-splicing factor 38 (Fragment) n=1 Tax=Fib... [more]
A0A0V0GSG3_SOLCH3.520e-5077.66Pre-mRNA-splicing factor 38 (Fragment) n=1 Tax=Sol... [more]
A0A1Q3D6I5_CEPFO5.600e-5081.91Pre-mRNA-splicing factor 38 (Fragment) n=1 Tax=Cep... [more]
A0A392QKP4_9FABA5.720e-5077.66Pre-mRNA-splicing factor 38 (Fragment) n=1 Tax=Tri... [more]
A0A835Q3Q8_VANPL6.070e-5079.79Pre-mRNA-splicing factor 38 n=1 Tax=Vanilla planif... [more]
A0A6P5GTV5_ANACO9.880e-5078.72Pre-mRNA-splicing factor 38 n=1 Tax=Ananas comosus... [more]
A0A3Q7EQ21_SOLLC1.240e-4977.66Pre-mRNA-splicing factor 38 n=1 Tax=Solanum lycope... [more]
A0A2P2K250_RHIMU1.290e-4976.34Pre-mRNA-splicing factor 38 n=1 Tax=Rhizophora muc... [more]
A0A1D1Z5H8_9ARAE1.670e-4979.79Pre-mRNA-splicing factor 38 (Fragment) n=1 Tax=Ant... [more]
A0A8J4VAS4_9ROSI2.340e-4978.49Pre-mRNA-splicing factor 38 n=1 Tax=Castanea molli... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005037Pre-mRNA-splicing factor 38PFAMPF03371PRP38coord: 6..94
e-value: 2.8E-31
score: 108.7
IPR005037Pre-mRNA-splicing factor 38PANTHERPTHR23142UNCHARACTERIZEDcoord: 2..94
NoneNo IPR availablePANTHERPTHR23142:SF1PRE-MRNA-SPLICING FACTOR 38Acoord: 2..94

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig55900contigH-elongata_contig55900:605..2553 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig55900.13019.1mRNA_H-elongata_contig55900.13019.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig55900 605..2553 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig55900.13019.1 ID=prot_H-elongata_contig55900.13019.1|Name=mRNA_H-elongata_contig55900.13019.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=94bp
DPLARTVHGTNPQNLIEKITRQKIYNNLYWKEHCFGLTAETLVDKAMMLT
HLGGSFGGNQQPTKFLCLVLKMLQIQPEKEIVIEFIKNEDYKYV
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR005037PRP38