mRNA_H-elongata_contig55891.13017.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig55891.13017.1
Unique NamemRNA_H-elongata_contig55891.13017.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig55891.13017.1 vs. uniprot
Match: D7G8H4_ECTSI (WD repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8H4_ECTSI)

HSP 1 Score: 99.4 bits (246), Expect = 8.460e-21
Identity = 43/70 (61.43%), Postives = 57/70 (81.43%), Query Frame = 1 
Query:   13 GEVTELAFSAEEDHIIAGMKDCGVRIWSVYSGAIELFAPPLAGTNEDGGYHAGHLSCDIIID-PARGVLM 219
            G+++E+AFSA+  H++ G K+  VRIW   SG +EL APPLAG+NEDGGYHAGHLSCDI++  P+RG+LM
Sbjct:   38 GDISEIAFSADGAHLLTGAKNFAVRIWGTRSGEVELLAPPLAGSNEDGGYHAGHLSCDIVLHHPSRGMLM 107
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig55891.13017.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G8H4_ECTSI8.460e-2161.43WD repeat-containing protein n=1 Tax=Ectocarpus si... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig55891contigH-elongata_contig55891:1973..3676 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionWD40/YVTN repeat-like-containing domain
Ec32 orthologEc-14_003040.1
Exons4
Model size818
Cds size648
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig55891.13017.1prot_H-elongata_contig55891.13017.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig55891 2039..3572 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930909.8864527-UTR-H-elongata_contig55891:1972..20381622930909.8864527-UTR-H-elongata_contig55891:1972..2038Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig55891 1973..2038 +
1691679620.8526874-UTR-H-elongata_contig55891:1972..20381691679620.8526874-UTR-H-elongata_contig55891:1972..2038Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig55891 1973..2038 +
1622930909.9740663-UTR-H-elongata_contig55891:3572..36761622930909.9740663-UTR-H-elongata_contig55891:3572..3676Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig55891 3573..3676 +
1691679620.9051058-UTR-H-elongata_contig55891:3572..36761691679620.9051058-UTR-H-elongata_contig55891:3572..3676Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig55891 3573..3676 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930909.9000099-CDS-H-elongata_contig55891:2038..21071622930909.9000099-CDS-H-elongata_contig55891:2038..2107Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55891 2039..2107 +
1691679620.8625214-CDS-H-elongata_contig55891:2038..21071691679620.8625214-CDS-H-elongata_contig55891:2038..2107Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55891 2039..2107 +
1622930909.9161906-CDS-H-elongata_contig55891:2418..26701622930909.9161906-CDS-H-elongata_contig55891:2418..2670Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55891 2419..2670 +
1691679620.8718646-CDS-H-elongata_contig55891:2418..26701691679620.8718646-CDS-H-elongata_contig55891:2418..2670Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55891 2419..2670 +
1622930909.9361997-CDS-H-elongata_contig55891:2833..31061622930909.9361997-CDS-H-elongata_contig55891:2833..3106Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55891 2834..3106 +
1691679620.880641-CDS-H-elongata_contig55891:2833..31061691679620.880641-CDS-H-elongata_contig55891:2833..3106Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55891 2834..3106 +
1622930909.9581017-CDS-H-elongata_contig55891:3518..35721622930909.9581017-CDS-H-elongata_contig55891:3518..3572Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55891 3519..3572 +
1691679620.8950305-CDS-H-elongata_contig55891:3518..35721691679620.8950305-CDS-H-elongata_contig55891:3518..3572Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55891 3519..3572 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig55891.13017.1

>prot_H-elongata_contig55891.13017.1 ID=prot_H-elongata_contig55891.13017.1|Name=mRNA_H-elongata_contig55891.13017.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=216bp
MKDCGVRIWSVYSGAIELFAPPLAGTNEDGGYHAGHLSCDIIIDPARGVL
MPAGSATGGVNVWYSGADTRRMTELRDNGHPYGVSVDHLAAYPDGRYFIS
ADRTTMKVWSTKDFRCKRTVRSPFEIHILKVSSKCRFVFCAGEGEKKRGV
VAIWNGGKRDEVLPTDGSTELKPIRILKGHGREIKSLHTAENQGKASTKC
WLRRHSMVGLKFGMC*
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mRNA from alignment at H-elongata_contig55891:1973..3676+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig55891.13017.1 ID=mRNA_H-elongata_contig55891.13017.1|Name=mRNA_H-elongata_contig55891.13017.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1704bp|location=Sequence derived from alignment at H-elongata_contig55891:1973..3676+ (Himanthalia elongata Himel1 dioecious)
GGTGATCGAGATGGTGAAGTTACAGAATTAGCCTTTTCGGCCGAAGAGGA
TCACATCATAGCCGGAATGAAGGACTGTGGCGTGCGTATCTGGAGCGTCT
ATTCCGGCGCGATCGAACTGTTCGCCCCGCCACTTGTACGTGTAACAAAA
TAATGACTAGGCTCTACCTGTTCAGCTGACCACGAGCAGAAGGCAACCAA
ATCCGGTTGATCTTCTGCTGAAAGTGTGACCCTACATCATACATACATAC
AAACATACAAACATACTTGGTGTCGTATGAGTGAAGAATAGACTTGTGAT
GAACCACCATATGTAGTGTATTGCCTCCAGGAGGAAGTTGCTGACGTTTT
GCGATAATATCAACTGTCGATCTGTCATAAACAAAACACATTTATTCGCA
CTTTTGATGTCCGTGCATGCATATTATGCGTGTTTGGACGGCGTAGGCCG
GAACCAACGAAGACGGAGGATACCACGCTGGTCACCTCAGTTGCGATATC
ATCATTGATCCGGCGCGAGGCGTGCTCATGCCAGCAGGATCAGCGACGGG
AGGAGTAAACGTGTGGTACAGCGGAGCGGACACTCGCCGCATGACGGAAC
TGCGAGACAACGGTCATCCTTATGGAGTTTCGGTAGATCACCTCGCTGCC
TACCCGGATGGCCGCTACTTCATCAGCGCGGACCGTACCACCATGAAGGT
ATGGCGTGAAATACCGGATATTATTATATATGGCTATGTACGTTAAACAT
TCTGTGGTTCTCGTTGACGCACGAGTTACCCGCCGCCGATTACCCGTATT
ACATTCCCTCTGTGGGTAAGCATTTGTCAACCACACTGTCCTTTGTCGCA
TCCTTTCATAGGTTTGGTCCACGAAAGACTTTAGGTGCAAACGGACCGTA
CGGAGCCCGTTCGAGATTCATATCCTAAAGGTTTCTTCGAAATGCCGCTT
CGTTTTCTGCGCCGGGGAAGGGGAAAAAAAACGCGGCGTAGTCGCTATTT
GGAACGGTGGGAAACGTGATGAAGTTCTTCCAACTGACGGATCTACCGAG
CTGAAGCCAATCCGAATTCTGAAAGGACATGGGAGAGAGATTAAGTCATT
ACATACGGCCGAGAATCAAGGCAAAGCAAGCACGGTAGTAGTTGTAGTAA
ACCACGAAAATGATACGAAAGAGTTTGTAATATTTCCAACACTCACGGCA
TTACGTGGCCCTGCTTTGTCATCGCAAAGCACTCGTCAAGAAATACAGAT
ATGTATGGTGGTGTTGAAAGCTTTCACAACTCCAAAACTTATGCGTTCTA
TCTGTGGCAAGTGAGGGTCTTCTCTAGACCATAATAAGACGCAATCGTTG
TCAAATATAGTTATTGGCGCTATTTTATCAATGAAAACCGCCTGGCGTGA
TATTTAACACATTACATTGCTGGCAGCTATCAATGAAAACCGAGCGATCT
CATCAATGAGTAGGAAGGTGCGCTCTGACAGGAGTTAATTTACACTCTGC
TTTGATGTGTACCCCTCATGGAAACGGAATATTGCGGTGGCGATAGAAGT
GTTGGTTACGACGTCACTCGATGGTAGGGCTAAAGTTTGGGATGTGCTAA
CGGGCGCGTGCACGAAGACGCTGTGGAGCAAAGGGGGGCTGCATTCGCAC
CTATCAAATGCAGCTCTGGTGAATCGCGGAGACTGGATGATAATGGCTTA
CAAT
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Coding sequence (CDS) from alignment at H-elongata_contig55891:1973..3676+

>mRNA_H-elongata_contig55891.13017.1 ID=mRNA_H-elongata_contig55891.13017.1|Name=mRNA_H-elongata_contig55891.13017.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1296bp|location=Sequence derived from alignment at H-elongata_contig55891:1973..3676+ (Himanthalia elongata Himel1 dioecious)
ATGAAGGACTGTGGCGTGCGTATCTGGAGCGTCTATTCCGGCGCGATCGA
ACTGTTCGCCCCGCCACTTATGAAGGACTGTGGCGTGCGTATCTGGAGCG
TCTATTCCGGCGCGATCGAACTGTTCGCCCCGCCACTTGCCGGAACCAAC
GAAGACGGAGGATACCACGCTGGTCACCTCAGTTGCGATATCATCATTGA
TCCGGCGCGAGGCGTGCTCATGCCAGCAGGATCAGCGACGGGAGGAGTAA
ACGTGTGGTACAGCGGAGCGGACACTCGCCGCATGACGGAACTGCGAGAC
AACGGTCATCCTTATGGAGTTTCGGTAGATCACCTCGCTGCCTACCCGGA
TGGCCGCTACTTCATCAGCGCGGACCGTACCACCATGAAGGCCGGAACCA
ACGAAGACGGAGGATACCACGCTGGTCACCTCAGTTGCGATATCATCATT
GATCCGGCGCGAGGCGTGCTCATGCCAGCAGGATCAGCGACGGGAGGAGT
AAACGTGTGGTACAGCGGAGCGGACACTCGCCGCATGACGGAACTGCGAG
ACAACGGTCATCCTTATGGAGTTTCGGTAGATCACCTCGCTGCCTACCCG
GATGGCCGCTACTTCATCAGCGCGGACCGTACCACCATGAAGGTTTGGTC
CACGAAAGACTTTAGGTGCAAACGGACCGTACGGAGCCCGTTCGAGATTC
ATATCCTAAAGGTTTCTTCGAAATGCCGCTTCGTTTTCTGCGCCGGGGAA
GGGGAAAAAAAACGCGGCGTAGTCGCTATTTGGAACGGTGGGAAACGTGA
TGAAGTTCTTCCAACTGACGGATCTACCGAGCTGAAGCCAATCCGAATTC
TGAAAGGACATGGGAGAGAGATTAAGTCATTACATACGGCCGAGAATCAA
GGCAAAGCAAGCACGGTTTGGTCCACGAAAGACTTTAGGTGCAAACGGAC
CGTACGGAGCCCGTTCGAGATTCATATCCTAAAGGTTTCTTCGAAATGCC
GCTTCGTTTTCTGCGCCGGGGAAGGGGAAAAAAAACGCGGCGTAGTCGCT
ATTTGGAACGGTGGGAAACGTGATGAAGTTCTTCCAACTGACGGATCTAC
CGAGCTGAAGCCAATCCGAATTCTGAAAGGACATGGGAGAGAGATTAAGT
CATTACATACGGCCGAGAATCAAGGCAAAGCAAGCACGAAGTGTTGGTTA
CGACGTCACTCGATGGTAGGGCTAAAGTTTGGGATGTGCTAAAAGTGTTG
GTTACGACGTCACTCGATGGTAGGGCTAAAGTTTGGGATGTGCTAA
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