prot_H-elongata_contig55891.13017.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig55891.13017.1
Unique Nameprot_H-elongata_contig55891.13017.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length216
Homology
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BLAST of mRNA_H-elongata_contig55891.13017.1 vs. uniprot
Match: D7G8H4_ECTSI (WD repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8H4_ECTSI)

HSP 1 Score: 79.7 bits (195), Expect = 3.700e-14
Identity = 35/51 (68.63%), Postives = 42/51 (82.35%), Query Frame = 0 
Query:    2 KDCGVRIWSVYSGAIELFAPPLAGTNEDGGYHAGHLSCDIIID-PARGVLM 51
            K+  VRIW   SG +EL APPLAG+NEDGGYHAGHLSCDI++  P+RG+LM
Sbjct:   57 KNFAVRIWGTRSGEVELLAPPLAGSNEDGGYHAGHLSCDIVLHHPSRGMLM 107
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig55891.13017.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G8H4_ECTSI3.700e-1468.63WD repeat-containing protein n=1 Tax=Ectocarpus si... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3D2.130.10.10coord: 2..203
e-value: 3.1E-10
score: 41.4
IPR036322WD40-repeat-containing domain superfamilySUPERFAMILY50978WD40 repeat-likecoord: 3..186

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig55891contigH-elongata_contig55891:2039..3572 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig55891.13017.1mRNA_H-elongata_contig55891.13017.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig55891 1973..3676 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig55891.13017.1 ID=prot_H-elongata_contig55891.13017.1|Name=mRNA_H-elongata_contig55891.13017.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=216bp
MKDCGVRIWSVYSGAIELFAPPLAGTNEDGGYHAGHLSCDIIIDPARGVL
MPAGSATGGVNVWYSGADTRRMTELRDNGHPYGVSVDHLAAYPDGRYFIS
ADRTTMKVWSTKDFRCKRTVRSPFEIHILKVSSKCRFVFCAGEGEKKRGV
VAIWNGGKRDEVLPTDGSTELKPIRILKGHGREIKSLHTAENQGKASTKC
WLRRHSMVGLKFGMC*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR015943WD40/YVTN_repeat-like_dom_sf
IPR036322WD40_repeat_dom_sf