mRNA_H-elongata_contig558.13012.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig558.13012.1
Unique NamemRNA_H-elongata_contig558.13012.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig558.13012.1 vs. uniprot
Match: A0A6H5JCX8_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCX8_9PHAE)

HSP 1 Score: 391 bits (1004), Expect = 6.360e-125
Identity = 207/480 (43.12%), Postives = 282/480 (58.75%), Query Frame = 3
Query:  192 SREMLMNAVELSFRRPDDCRALMFPDASDLFWGCCLTQVPEEELVAMLSFMDTSHEPLGFLSVVFRGSQLCWPMMDKESFAILSAFQCVPYLLWDGSNIFCDHRNLADIFSPQSCGMALSKAASQRLAGWLVCMNQFNYVIQHIPGEDNNWGDLLSRWRVLDSEGSLVRANVIAVVAPSIEDYQMPSKSEIKDRQ---------------DAVARGQIEVATSLRIMTRGEHELYCVSYQGRMVTINGVCVHAR-CGHRRVRGTTHRLGAYCAWNNIENDIAEFVRQCLHCVDSKAGNAMPRPLGDLVHGS*VGDVLHFDYLSSGESEAIDMGGLVDR-GYKHVLVLMDDVSRFVWLEEAVSCLMKVAARAVLKCCASFGVPKAFTSNGGTHFTGKMMQIVSSRLGVVHHFGVTNVSWSHGTVERMNREVLKTFRAVLSERHRPPSEWPLVLGVVQWAFHSAYRERMGTTPFQMMTGRPP 1580
            +++M+ NAV L +        LMFPDASD  WG  +TQVP+ E+   +   D SHEPLGFLS  FRGSQL W  +DKE FAI+S F+ + YLLW G +I  DHRNLA IF P++C   + K  +QRL  W   + Q++Y IQHI GE N WGDLLSRW  + +    V     AV  PS  D  +PSK+ I++ Q               D + R   +     R+M  G   L+       M     +C H +  GHR V  T HRL  YC W+ ++ D+ EFV+QCLHC+DSK+G  +PRP G+ VHG   G+VLHFDYL  G+S  +   GL +  GY ++LV+MDD+S F W+E   +C  ++ A+ +L  C + GVP+ + S+  THF   +M  +   LGV   F V N  WS+GT ERM RE+++T +AVL ER R   +W  ++  VQWA ++AYRER  +TP+ +M GR P
Sbjct:  177 AQDMVANAVTL-YHPVAGKAVLMFPDASDEHWGSFVTQVPQSEVDNNVPVEDMSHEPLGFLSGTFRGSQLRWATVDKEGFAIISTFRRLEYLLWGGVHIHTDHRNLAYIFDPEACISTVPKTTAQRLENWKAVLGQYDYTIQHISGERNCWGDLLSRWVNVPA----VSNRSAAVFMPSTPDCNLPSKNAIREVQQTVRASVGDTNACFTDTLGRVAPDDEGLFRVMIDGRKVLWIPDTARDMQLRLMLCAHMKEAGHRGVTATMHRLREYCCWSTMDRDVKEFVQQCLHCMDSKSGEIVPRPFGETVHGKRPGEVLHFDYLHVGKSGPLGADGLDESDGYVYLLVMMDDLSNFAWMEPTGTCTARLTAQHLLNWCKTLGVPEVWVSDTATHFKNSVMDTLEKALGVERRFTVANSPWSNGTCERMMREIVRTMKAVLQERRRNVRDWVDLVPAVQWALNTAYRERYASTPYHVMFGRAP 651          
BLAST of mRNA_H-elongata_contig558.13012.1 vs. uniprot
Match: A0A6H5L7F6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7F6_9PHAE)

HSP 1 Score: 391 bits (1004), Expect = 5.060e-118
Identity = 207/480 (43.12%), Postives = 282/480 (58.75%), Query Frame = 3
Query:  192 SREMLMNAVELSFRRPDDCRALMFPDASDLFWGCCLTQVPEEELVAMLSFMDTSHEPLGFLSVVFRGSQLCWPMMDKESFAILSAFQCVPYLLWDGSNIFCDHRNLADIFSPQSCGMALSKAASQRLAGWLVCMNQFNYVIQHIPGEDNNWGDLLSRWRVLDSEGSLVRANVIAVVAPSIEDYQMPSKSEIKDRQ---------------DAVARGQIEVATSLRIMTRGEHELYCVSYQGRMVTINGVCVHAR-CGHRRVRGTTHRLGAYCAWNNIENDIAEFVRQCLHCVDSKAGNAMPRPLGDLVHGS*VGDVLHFDYLSSGESEAIDMGGLVDR-GYKHVLVLMDDVSRFVWLEEAVSCLMKVAARAVLKCCASFGVPKAFTSNGGTHFTGKMMQIVSSRLGVVHHFGVTNVSWSHGTVERMNREVLKTFRAVLSERHRPPSEWPLVLGVVQWAFHSAYRERMGTTPFQMMTGRPP 1580
            +++M+ NAV L +        LMFPDASD  WG  +TQVP+ E+   +   D SHEPLGFLS  FRGSQL W  +DKE FAI+S F+ + YLLW G +I  DHRNLA IF P++C   + K  +QRL  W   + Q++Y IQHI GE N WGDLLSRW  + +    V     AV  PS  D  +PSK+ I++ Q               D + R   +     R+M  G   L+       M     +C H +  GHR V  T HRL  YC W+ ++ D+ EFV+QCLHC+DSK+G  +PRP G+ VHG   G+VLHFDYL  G+S  +   GL +  GY ++LV+MDD+S F W+E   +C  ++ A+ +L  C + GVP+ + S+  THF   +M  +   LGV   F V N  WS+GT ERM RE+++T +AVL ER R   +W  ++  VQWA ++AYRER  +TP+ +M GR P
Sbjct:  953 AQDMVANAVTL-YHPVAGKAVLMFPDASDEHWGSFVTQVPQSEVDNNVPVEDMSHEPLGFLSGTFRGSQLRWATVDKEGFAIISTFRRLEYLLWGGVHIHTDHRNLAYIFDPEACISTVPKTTAQRLENWKAVLGQYDYTIQHISGERNCWGDLLSRWVNVPA----VSNRSAAVFMPSTPDCNLPSKNAIREVQQTVRASVGDTNACFTDTLGRVAPDDEGLFRVMIDGRKVLWIPDTARDMQLRLMLCAHMKEAGHRGVTATMHRLREYCCWSTMDRDVKEFVQQCLHCMDSKSGEIVPRPFGETVHGKRPGEVLHFDYLHVGKSGPLGADGLDESDGYVYLLVMMDDLSNFAWMEPTGTCTARLTAQHLLNWCKTLGVPEVWVSDTATHFKNSVMDTLEKALGVERRFTVANSPWSNGTCERMMREIVRTMKAVLQERRRNVRDWVDLVPAVQWALNTAYRERYASTPYHVMFGRAP 1427          
BLAST of mRNA_H-elongata_contig558.13012.1 vs. uniprot
Match: A0A6H5K5A5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5A5_9PHAE)

HSP 1 Score: 382 bits (982), Expect = 9.350e-115
Identity = 207/485 (42.68%), Postives = 289/485 (59.59%), Query Frame = 3
Query:  192 SREMLMNAVELSFRRPDDCRALMFPDASDLFWGCCLTQVPEEELVAMLSFMDTSHEPLGFLSVVFRGSQLC-WPMMDKESFAILSAFQCVPYLLWDGSNIFCDHRNLADIFSPQSCGMALSKAASQRLAGWLVCMNQFNYVIQHIPGEDNNWGDLLSRWRVLDSEGSLVRANVIAVVAPSIEDYQMPSKSEIKDRQDAVARGQI--------EVATSLRIMTRGEHELYCVSYQGRMVTING-----------VCVHAR-CGHRRVRGTTHRLGAYCAWNNIENDIAEFVRQCLHCVDSKAGNAMPRPLGDLVHGS*VGDVLHFDYLSSGESEAIDMGGL-VDRGYKHVLVLMDDVSRFVWLEEAVSCLMKVAARAVLKCCASFGVPKAFTSNGGTHFTGKMMQIVSSRLGVVHHFGVTNVSWSHGTVERMNREVLKTFRAVLSERHRPPSEWPLVLGVVQWAFHSAYRERMGTTPFQMMTGRPP 1580
            +++++  AV LS   P  C  LMFPDASD  WG  LTQVP+++L   +   D +HEP+GFLS  F+G+Q   W  +DKE +AI+S F+ + YLLWD  +IF DHRNLA IF P++C  A++K  +QRL  W   + Q++Y I+HI GE N WGDLLSRW  + S    V     AV APS  D  MPSK  ++D Q A AR ++          +T++   T     L+ V   GR V               VC H +  GHR    T  RL  YC W  +E  + +FV+QCLHC+DSKAG  +PRPLG+ VHG+  G+V+HFDYL  G S  +   GL  + G+K++LV+MDD+S +VWLE   +C   + A+ +L  C   GVP+ + S+  +HF   MM  + + LGV  +F V N  WS+GT ERM REV++T +A++ E      +W  ++  VQWA ++A+RER G+TP+ +M GR P
Sbjct: 1051 AQDLVARAVALSHPSPG-CAVLMFPDASDEHWGSFLTQVPQDQLDRGVPVEDMAHEPMGFLSGTFKGAQQQRWATVDKEGYAIVSTFKRLEYLLWDSVHIFTDHRNLAYIFDPEACVSAVAKTTAQRLDQWKAVLGQYDYTIRHISGERNCWGDLLSRWVSVPS----VSVRAAAVYAPSEPDAAMPSKQVVRDAQQA-ARSKLGALAGPASSFSTAVGTATLDAEGLFRVGMNGRDVLWIPDQASALQVRLMVCAHMKEAGHRGAVATLQRLSEYCCWFRMEEHVTDFVKQCLHCMDSKAGEKVPRPLGETVHGTRPGEVVHFDYLYVGASGPLGDDGLDEEEGFKYILVMMDDMSNWVWLEPTGACTACLTAQHLLTWCKILGVPEVWVSDTASHFKNHMMAALETALGVDRNFSVANSPWSNGTCERMMREVVRTLKAMIQEERGRTRDWVDLVPAVQWALNTAFRERYGSTPYHVMFGRAP 1529          
BLAST of mRNA_H-elongata_contig558.13012.1 vs. uniprot
Match: A0A6A3I3R6_9STRA (Uncharacterized protein n=3 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3I3R6_9STRA)

HSP 1 Score: 270 bits (689), Expect = 1.450e-76
Identity = 183/495 (36.97%), Postives = 260/495 (52.53%), Query Frame = 3
Query:  141 RVDETAAEGHELNETNNSREMLMNAVELSFRRPDDCRALMFPDASDLFWGCCLTQVPEEELVAMLSFMDTSHEPLGFLSVVFRGSQLCWPMMDKESFAILSAFQCVPYLLWD--GSNIFCDHRNLADIFSPQSCGMALSKAASQRLAGWLVCMNQFNYVIQHIPGEDNNWGDLLSRW---RVLDSEGSLVRANVIAVV---APSIE-DYQMPSKSEIKDRQDAV-ARGQIEVATSLRIMTRGEHELYCVSY--QGRMVTINGVCVHARCG---HRRVRGTTHRLGAYCAWNNIENDIAEFVRQCLHCVDSKAGNAMPRPLGDLVHGS*VGDVLHFDYLSSGESEAIDMGGLVDRGYKHVLVLMDDVSRFVWLEEAVSCLMKVAARAVLKCCASFGVPKAFTSNGGTHFTGKMMQIVSSRLGVVHHFGVTNVSWSHGTVERMNREVLKTFRAVLSERHRPPSEWPLVLGVVQWAFHSAYRERMG-TTPFQMMTGRP 1577
            R+DE      E +     R  L+  V L+  RP      ++ DAS  FWG  LTQ+   E  A L   +  H+PL FLS  F G+   W  ++KE+FAI+ A + + YLL    G  ++ DHRNL  IF+P +   A+++  + +L  W + +  F YVI+H+PGE+N WGDLLSRW   +VL++    VR   +AVV   +P  E ++  PS+SEI+  Q+A  A GQI   T L      EH L    Y           +CV A  G   HR  R T   L A   W+++  D+A FV  CLHC+ + +G  +PRP G+ +  +   ++LHFDYL+  E E    GGL     K+VLVL D +S +V L   +      A RA++     FGV   + S+ G HF  ++++ +   LG  HHF      W++GTVE  NREV K  +A+LSER     +WP +L VVQ A +    +R+G TTP    T  P
Sbjct:  331 RLDEVGWHDTEASSFEAVRAALLRMVPLAHPRPT-AEVCLYTDASQDFWGAVLTQLKPGE--AELPLTEQQHQPLAFLSGRFVGASSRWSTIEKEAFAIVEATRRLEYLLLRPAGFRLYTDHRNLVYIFNPYATDGAMARYRADKLQRWALSLMSFKYVIEHVPGEENVWGDLLSRWGAGQVLEAHHGAVRVARLAVVQRVSPLEEPEFVWPSESEIRASQEAARASGQIMTGTQLD----DEHHLLVTVYIPDDAADLQQRLCVVAHAGASGHRGGRATQQALEAVFYWSSLGADVAAFVNGCLHCMTTASGR-IPRPFGETLVATKPNELLHFDYLTMVEGE----GGL-----KYVLVLKDGMSGYVELVARLQATADTAYRALIDWFKRFGVVHQWASDQGAHFRNQIIEQLQRALGAHHHFVTAYTPWANGTVEVANREVPKAMKALLSERRLSVRDWPALLPVVQAALNGMPADRLGGTTPLTAFTALP 808          
BLAST of mRNA_H-elongata_contig558.13012.1 vs. uniprot
Match: A0A6A3ME06_9STRA (Uncharacterized protein n=3 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3ME06_9STRA)

HSP 1 Score: 270 bits (689), Expect = 1.640e-75
Identity = 183/519 (35.26%), Postives = 272/519 (52.41%), Query Frame = 3
Query:   69 AIFTGNELDALVTASHGGKCGTASRVDETAAEGHELNETNNSREMLMNAVELSFRRPDDCRALMFPDASDLFWGCCLTQVPEEELVAMLSFMDTSHEPLGFLSVVFRGSQLCWPMMDKESFAILSAFQCVPYLLWD--GSNIFCDHRNLADIFSPQSCGMALSKAASQRLAGWLVCMNQFNYVIQHIPGEDNNWGDLLSRW---RVLDSEGSLVRANVIAVV---APSIE-DYQMPSKSEIKDRQDAV-ARGQIEVATSL----RIMTRGEHELYCVSYQGRMVTINGVCVHARC-GHRRVRGTTHRLGAYCAWNNIENDIAEFVRQCLHCVDSKAGNAMPRPLGDLVHGS*VGDVLHFDYLSSGESEAIDMGGLVDRGYKHVLVLMDDVSRFVWLEEAVSCLMKVAARAVLKCCASFGVPKAFTSNGGTHFTGKMMQIVSSRLGVVHHFGVTNVSWSHGTVERMNREVLKTFRAVLSERHRPPSEWPLVLGVVQWAFHSAYRERMG-TTPFQMMTGRP 1577
            A++   E  A V  S   K     R+DE      E +     R  L+  V L+  RP      ++ DAS  FWG  +TQ+   E  A L  ++  H+PL FLS  F G+  CW  ++KE+FAI+ A + + YLL    G  ++ DHRNL  IF+P +   A+++  + +L  W + +  F YVI+H+PGE+N WGDLLS W   +VL+++   +R   +AVV   +P  E ++  PS+SEI+  Q+A  A GQI   T +     ++     ++Y       +     V  HA   GH   R T   L A   W+++  D+A FV  CLHC+ + A + +PRP G+ +  +   ++LHFDYL+  E E    GGL     K+VLVL D +S +V L   +      A RA++     FGV   + S+ G HF  ++++ +   LG  HHF      W++GTVE +NREVLK  +A+LSER  P  +WP +L VVQ A +    +R+G  TP    T  P
Sbjct:  595 ALYEALERAAQVAGSRKQKKMAKVRLDEVGWHDTEASSFEAVRAALLRMVPLAHPRPT-AEVCLYTDASQDFWGAVVTQLKPGE--AELPLIEQQHQPLAFLSGRFVGASSCWSTIEKEAFAIVEATRRLEYLLLRPAGFRLYTDHRNLVYIFNPYATDGAMARYRADKLQRWALLLMSFKYVIEHVPGEENVWGDLLSCWGAGQVLEAQQGALRVARLAVVQRVSPLEEPEFVWPSESEIRASQEAARASGQIMTGTQIDDERHLLVTRTGQVYIPDDAADLQQRLCVVAHAGASGHIGGRATQQALEAVFYWSSLGADVAAFVNGCLHCMTT-ASDRIPRPFGETLVATKPNELLHFDYLTMVEGE----GGL-----KYVLVLKDGMSGYVELVACLQATADTAYRALIDWFKRFGVVHQWASDQGAHFRNQIIEQLQRALGAHHHFVTAYTPWANGTVEVVNREVLKAMKALLSERRLPVRDWPGLLPVVQEALNGMPADRLGGKTPLTAFTALP 1100          
BLAST of mRNA_H-elongata_contig558.13012.1 vs. uniprot
Match: A0A6A4CIS0_9STRA (Integrase catalytic domain-containing protein n=2 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A4CIS0_9STRA)

HSP 1 Score: 262 bits (669), Expect = 5.990e-74
Identity = 168/470 (35.74%), Postives = 254/470 (54.04%), Query Frame = 3
Query:  195 REMLMNAVELSFRRPDDCRAL-MFPDASDLFWGCCLTQVPEEELVAMLSFMDTSHEPLGFLSVVFRGSQLCWPMMDKESFAILSAFQCVPYLLW--DGSNIFCDHRNLADIFSPQSCGMALSKAASQRLAGWLVCMNQFNYVIQHIPGEDNNWGDLLSRW-----RVLDSEGSLVRANVIAVVAPSIED--YQMPSKSEIKDRQDAVARGQIEVATSLRIMTRGEHELYCVSYQGRMVTI-------NGVCV--HA-RCGHRRVRGTTHRLGAYCAWNNIENDIAEFVRQCLHCVDSKAGNAMPRPLGDLVHGS*VGDVLHFDYLSSGESEAIDMGGLVDRGYKHVLVLMDDVSRFVWLEEAVSCLMKVAARAVLKCCASFGVPKAFTSNGGTHFTGKMMQIVSSRLGVVHHFGVTNVSWSHGTVERMNREVLKTFRAVLSERHRPPSEWPLVLGVVQWAFHSAYRERMG 1544
            R  L+  V L+   PD  +A+ +F DAS  FW    TQ  E EL     F   +H PL FLS  F G+QL WP ++KE++AI+ + + + YLL    G ++F DHRNLA IF+P +   ++ +  + +L  W + M  + YVI+HI G+DN W D+LSRW       +++  S+ +  V+  ++P +ED  ++ P+  EI++ Q    + + E  +          E  C    G  V I         +CV  HA R GHR  R TT  + A+C W ++ +D+ +FVR C+HCV ++ G   PRP G  +H +   +VLHFDYL+  E E        +   K+VLV+ DD S FV L        +  A ++L     +GV   + S+ GTHF  +++  ++ +LG  HHF      W++GTVE +NR +LK  RAVLSER   PS+W  VLG+VQ A +    +++G
Sbjct:  265 RSSLLAMVPLA--HPDPSKAVALFTDASQDFWSAVCTQDEESELEK--PFDKQNHRPLAFLSGRFTGAQLRWPTIEKEAYAIVESVKRLEYLLLRPGGFHLFTDHRNLAYIFNPSATDGSMQRYQADKLQRWAMAMTSYRYVIEHIRGDDNAWADMLSRWGNPQASRIEAASSVKQIAVVPQLSP-LEDEAFEWPTIDEIRNAQQQQQQTRPEGVS-------WSEERSCFVADGDRVWIPENCDISQRICVVAHAGRSGHRGERTTTASVAAWCWWPSLVDDVVQFVRSCIHCVATRDGRE-PRPYGAAIHATKPNEVLHFDYLTLPEDE--------NSHNKYVLVVKDDFSGFVELYPTAEPDARTCATSLLAWFHRYGVVWQWVSDQGTHFKNQVVHELAMKLGANHHFTTAYCPWANGTVEVVNRLLLKCIRAVLSERRLSPSKWETVLGMVQAALNQQPSDKLG 713          
BLAST of mRNA_H-elongata_contig558.13012.1 vs. uniprot
Match: H3H555_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H555_PHYRM)

HSP 1 Score: 251 bits (640), Expect = 6.130e-70
Identity = 165/477 (34.59%), Postives = 250/477 (52.41%), Query Frame = 3
Query:  195 REMLMNAVELSFRRP--DDCRALMFPDASDLFWGCCLTQVPEEELVAMLSFMDTSHEPLGFLSVVFRGSQLCWPMMDKESFAILSAFQCVPYLLWD--GSNIFCDHRNLADIFSPQSCGMALSKAASQRLAGWLVCMNQFNYVIQHIPGEDNNWGDLLSRWRV---LDSEGSLVRANVIAVV---APSIE-DYQMPSKSEIKDRQDAV---ARGQIEVATSLRIMTRGEHELYCVSYQGRMVTINGVCVHARC-GHRRVRGTTHRLGAYCAWNNIENDIAEFVRQCLHCVDSKAGNAMPRPLGDLVHGS*VGDVLHFDYLSSGESEAIDMGGLVDRGYKHVLVLMDDVSRFVWLEEAVSCLMKVAARAVLKCCASFGVPKAFTSNGGTHFTGKMMQIVSSRLGVVHHFGVTNVSWSHGTVERMNREVLKTFRAVLSERHRPPSEWPLVLGVVQWAFHSAYRERM-GTTPFQMMTGRP 1577
            R+ L+N V L+   P  D C   ++ DAS+ +WG  +T +  EEL   L   +  H PL FLS  F G+   WP ++KE+FAI+ A + + YLL    G ++F DHRNL  IF+P +    +++  + +L  W + +  F YVI+H+PGE+N WGDLLSRW     L++  + +RA  +AVV   +P  E D+  PS+ EI+  Q A    A   ++     ++      +++     G +     V  HA   GHR    T   L     W  +  D+  FV +CLHC+ + AG  +PRP G+ +  +   +VLHFD+L+   S +         G K+VLVL D +S FV L          A + ++     FGV   + S+ G HF  ++++ +   LG  HHF      W++GTVE +NREVLK+ +A+LSER     +WP VL VVQ A ++   +R+ G +P    T  P
Sbjct:  244 RDALLNMVPLAHPSPTADLC---LYSDASNDYWGAVVTMLDPEEL--KLPRAEQHHRPLAFLSGRFVGAAQRWPTIEKEAFAIVEAVRRLEYLLLRPRGFHLFTDHRNLVYIFNPYATDGMMARYQADKLQRWALALMSFRYVIEHVPGEENAWGDLLSRWGAGPPLEATRTAIRAARLAVVERVSPLEEADFVWPSEQEIRAVQQAAGAAAHPGVQWNEERQLQMTSTGQVWIPPDSGELQQRLCVVAHAGASGHRGAAATLKSLSTCFFWPTMGPDVTTFVNECLHCMVA-AGGRIPRPFGETLRATRPNEVLHFDFLTMIMSTS---------GVKYVLVLKDGMSGFVELLACTHATSDHAYQGLIDWFKRFGVVHQWVSDQGAHFRNQVVERLQRALGAHHHFTTAYTPWANGTVEVVNREVLKSVKALLSERRMHVQDWPAVLPVVQAALNAMPADRLDGRSPLTAFTALP 705          
BLAST of mRNA_H-elongata_contig558.13012.1 vs. uniprot
Match: H3H4S7_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H4S7_PHYRM)

HSP 1 Score: 253 bits (647), Expect = 8.950e-70
Identity = 166/477 (34.80%), Postives = 251/477 (52.62%), Query Frame = 3
Query:  195 REMLMNAVELSFRRP--DDCRALMFPDASDLFWGCCLTQVPEEELVAMLSFMDTSHEPLGFLSVVFRGSQLCWPMMDKESFAILSAFQCVPYLLWD--GSNIFCDHRNLADIFSPQSCGMALSKAASQRLAGWLVCMNQFNYVIQHIPGEDNNWGDLLSRWRV---LDSEGSLVRANVIAVV---APSIE-DYQMPSKSEIKDRQDAV---ARGQIEVATSLRIMTRGEHELYCVSYQGRMVTINGVCVHARC-GHRRVRGTTHRLGAYCAWNNIENDIAEFVRQCLHCVDSKAGNAMPRPLGDLVHGS*VGDVLHFDYLSSGESEAIDMGGLVDRGYKHVLVLMDDVSRFVWLEEAVSCLMKVAARAVLKCCASFGVPKAFTSNGGTHFTGKMMQIVSSRLGVVHHFGVTNVSWSHGTVERMNREVLKTFRAVLSERHRPPSEWPLVLGVVQWAFHSAYRERM-GTTPFQMMTGRP 1577
            R+ L+N V L+   P  D C   ++ DAS+ +WG  +T +  EEL   L   +  H PL FLS  F G+   WP ++KE+FAI+ A + + YLL    G ++F DHRNL  IF+P +    +++  + +L  W + +  F YVI+H+PGE+N WGDLLSRW     L++  + +RA  +AVV   +P  E D+  PS+ EI+  Q A    A   ++     ++      +++     G +     V  HA   GHR    T   L     W  +  D+  FV +CLHC+ + AG  +PRP G+ +  +   +VLHFD+L+  ES +         G K+VLVL D +S FV L          A + ++     FGV   + S+ G HF  ++++ +   LG  HHF      W++GTVE +NREVLK+ +A+LSER     +WP VL VVQ A ++   +R+ G +P    T  P
Sbjct:  972 RDALLNMVPLAHPSPTADLC---LYSDASNDYWGAVVTMLDPEEL--KLPRAEQHHRPLAFLSGRFVGAAQRWPTIEKEAFAIVEAVRRLEYLLLRPRGFHLFTDHRNLVYIFNPYATDGMMARYQADKLQRWALALMSFRYVIEHVPGEENAWGDLLSRWGAGPPLEATRTAIRAARLAVVERVSPLEEADFVWPSEQEIRAVQQAAGAAAHPGVQWNEERQLQMTSTGQVWIPPDSGELQQRLCVVAHAGASGHRGAAATLKSLSTCFFWPTMGPDVTTFVNECLHCMVA-AGGRIPRPFGETLRATRPNEVLHFDFLTMIESTS---------GVKYVLVLKDGMSGFVELLACTHATSDHAYQGLIDWFKRFGVVHQWVSDQGAHFRNQVVERLQRALGAHHHFTTAYTPWANGTVEVVNREVLKSVKALLSERRMHVQDWPAVLPVVQAALNAMPADRLDGRSPLTAFTALP 1433          
BLAST of mRNA_H-elongata_contig558.13012.1 vs. uniprot
Match: A0A6A3GX76_9STRA (Uncharacterized protein (Fragment) n=2 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3GX76_9STRA)

HSP 1 Score: 244 bits (623), Expect = 2.090e-69
Identity = 160/464 (34.48%), Postives = 243/464 (52.37%), Query Frame = 3
Query:  258 MFPDASDLFWGCCLTQVPEEELVAMLSFMDTSHEPLGFLSVVFRGSQLCWPMMDKESFAILSAFQCVPYLLW--DGSNIFCDHRNLADIFSPQSCGMALSKAASQRLAGWLVCMNQFNYVIQHIPGEDNNWGDLLSRW------RVLDSEGSLVRANVIAVVAPSIEDYQM--PSKSEIKDRQ---DAVARGQIEVATSLRIMTRGEHELYCVSYQGRMVTING-------VCVHARCG---HRRVRGTTHRLGAYCAWNNIENDIAEFVRQCLHCVDSKAGNAMPRPLGDLVHGS*VGDVLHFDYLSSGESEAIDMGGLVDRGYKHVLVLMDDVSRFVWLEEAVSCLMKVAARAVLKCCASFGVPKAFTSNGGTHFTGKMMQIVSSRLGVVHHFGVTNVSWSHGTVERMNREVLKTFRAVLSERHRPPSEWPLVLGVVQWAFHSAYRERM-GTTPFQMMTGRP 1577
            ++ DAS  FWG  ++Q+   E+   L   D  H+PL FLS  F G+   WP ++KE+FAI+ A + +  LL    G  ++ DHRNL  IF P +   A+++  + +L  W + +  F YVI+H+PGE N WGDLLSRW      + + +   + R  VI  V+P +ED++   P+++EI+  Q    A  R Q  V          E +LY  S  GR+   +        +CV A  G   HR  R TT  L     W  +  D++ FV  CLHC+ + AG  +P+P G+ +  +   ++LHFDYL+  ESE+         G K+VLVL D++S +V L    +         ++     FGV   + S+ G HF  ++++ +   LG  HHF      W++GTVE +NRE+L+  +A+LSER  P  +WP VL VVQ A ++   +R+ G +P    T  P
Sbjct:   15 LYTDASQDFWGAMVSQLEPLEVSRPLE--DHHHQPLAFLSGRFVGAAARWPTIEKEAFAIVEATRRLECLLLRPKGFRLYTDHRNLVYIFDPYATDGAMARYQADKLQRWAMSLLSFRYVIEHVPGEANVWGDLLSRWGAGSTLQAVCASTRIARLAVIERVSP-LEDHEFVWPTEAEIRVLQRGTSASGRDQHGVQWD------DERQLYVTS-AGRVWIPDAAVEMQQRLCVVAHAGASGHRGARATTQALAVVFFWTTMSTDVSVFVSGCLHCM-ATAGGRIPQPFGETLRATKPNEILHFDYLTMVESES---------GLKYVLVLKDNMSGYVGLIACPNPTADYVYTGLMDWFKRFGVVLQWVSDQGAHFRNQVIERLQRALGAQHHFTTAYTPWANGTVEVVNRELLRAVKALLSERQLPVRDWPAVLSVVQGALNAMPADRLDGKSPLTAFTALP 458          
BLAST of mRNA_H-elongata_contig558.13012.1 vs. uniprot
Match: A0A6A4CL72_9STRA (Uncharacterized protein n=1 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A4CL72_9STRA)

HSP 1 Score: 249 bits (635), Expect = 9.930e-69
Identity = 166/482 (34.44%), Postives = 250/482 (51.87%), Query Frame = 3
Query:  195 REMLMNAVELSFRRP--DDCRALMFPDASDLFWGCCLTQVPEEELVAMLSFMDTSHEPLGFLSVVFRGSQLCWPMMDKESFAILSAFQCVPYLLWD--GSNIFCDHRNLADIFSPQSCGMALSKAASQRLAGWLVCMNQFNYVIQHIPGEDNNWGDLLSRW---RVLDSEGSLVRANVIAVV--APSIED--YQMPSKSEIKDRQDAVARGQIEVATSLRIMTRGEHELYCVSYQGRMVTING------VCVHARCG---HRRVRGTTHRLGAYCAWNNIENDIAEFVRQCLHCVDSKAGNAMPRPLGDLVHGS*VGDVLHFDYLSSGESEAIDMGGLVDRGYKHVLVLMDDVSRFVWLEEAVSCLMKVAARAVLKCCASFGVPKAFTSNGGTHFTGKMMQIVSSRLGVVHHFGVTNVSWSHGTVERMNREVLKTFRAVLSERHRPPSEWPLVLGVVQWAFHSAYRERMG-TTPFQMMTGRP 1577
            R  L+  V L+   P  D C   ++ DAS  FWG  +TQ+P  E    L+  D  H PL FLS  F G++  W  ++KE++AI+ A + + YLL    G  ++ DHRNL  IF+P +    +++  + +L  W + +  F Y+I+H+PGE N WGDLLSRW   +V + E    R   +AVV     +ED  +  PS++EIK  QDA      ++  + +    GE EL  +S     +  +       +CV A  G   HR  + T   L +   W  +  D+A FV +C HC+ + +G  +PRP G+ +  +   ++LHFDYLS  E          D G K+VLVL D +S +V L   +      A +A++     FGV   + S+ G HF  ++++ +   LG  HHF      W++GTVE +NREVLK  +A+LSE      +WP +L VVQ A +S   +R+G  +P    T  P
Sbjct:  371 RTALLKMVPLAHPNPTMDVC---LYTDASQDFWGAAVTQLPAGEAQRPLAEQD--HRPLAFLSGRFVGAESRWSTIEKEAYAIVEATRRLEYLLLRPRGFRLYTDHRNLVYIFNPYATDGTMARYQADKLQRWALSLMSFQYIIEHVPGEVNVWGDLLSRWGAGQVREDEHEATRVARLAVVERVSPLEDPEFVWPSEAEIKAVQDAAREAGQDLEEAQQT---GERELMVMSSGQVWIPADAEDLRQRLCVIAHAGASGHRGAQTTQRALESVFYWKTLAVDVAAFVGECQHCMATASGR-IPRPFGETLVATKPNEILHFDYLSMVEG---------DGGVKYVLVLKDGMSGYVELVVCLQATADTAYQALIDWFKRFGVVHQWVSDQGAHFRNQIVERLQRALGAQHHFVTAYTPWANGTVEVVNREVLKCMKALLSELRLAIRDWPALLPVVQAALNSMPADRLGGKSPLTAFTALP 834          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig558.13012.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JCX8_9PHAE6.360e-12543.13Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5L7F6_9PHAE5.060e-11843.13Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K5A5_9PHAE9.350e-11542.68Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6A3I3R6_9STRA1.450e-7636.97Uncharacterized protein n=3 Tax=Phytophthora rubi ... [more]
A0A6A3ME06_9STRA1.640e-7535.26Uncharacterized protein n=3 Tax=Phytophthora rubi ... [more]
A0A6A4CIS0_9STRA5.990e-7435.74Integrase catalytic domain-containing protein n=2 ... [more]
H3H555_PHYRM6.130e-7034.59Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
H3H4S7_PHYRM8.950e-7034.80Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
A0A6A3GX76_9STRA2.090e-6934.48Uncharacterized protein (Fragment) n=2 Tax=Phytoph... [more]
A0A6A4CL72_9STRA9.930e-6934.44Uncharacterized protein n=1 Tax=Phytophthora rubi ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig558contigH-elongata_contig558:5959..7634 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score93.2
Seed ortholog evalue1.1e-16
Seed eggNOG ortholog164328.Phyra85588
EggNOG free text desc.transposition, RNA-mediated
EggNOG OGs3QEWS@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons3
Model size1580
Cds size444
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig558.13012.1prot_H-elongata_contig558.13012.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig558 5959..6402 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930909.510965-CDS-H-elongata_contig558:5958..64021622930909.510965-CDS-H-elongata_contig558:5958..6402Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig558 5959..6402 -
1691679620.7241058-CDS-H-elongata_contig558:5958..64021691679620.7241058-CDS-H-elongata_contig558:5958..6402Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig558 5959..6402 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930909.5306666-UTR-H-elongata_contig558:6402..66611622930909.5306666-UTR-H-elongata_contig558:6402..6661Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig558 6403..6661 -
1691679620.7353196-UTR-H-elongata_contig558:6402..66611691679620.7353196-UTR-H-elongata_contig558:6402..6661Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig558 6403..6661 -
1622930909.5473576-UTR-H-elongata_contig558:6696..73871622930909.5473576-UTR-H-elongata_contig558:6696..7387Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig558 6697..7387 -
1691679620.7467844-UTR-H-elongata_contig558:6696..73871691679620.7467844-UTR-H-elongata_contig558:6696..7387Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig558 6697..7387 -
1622930909.5639832-UTR-H-elongata_contig558:7448..76341622930909.5639832-UTR-H-elongata_contig558:7448..7634Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig558 7449..7634 -
1691679620.7563522-UTR-H-elongata_contig558:7448..76341691679620.7563522-UTR-H-elongata_contig558:7448..7634Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig558 7449..7634 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig558.13012.1

>prot_H-elongata_contig558.13012.1 ID=prot_H-elongata_contig558.13012.1|Name=mRNA_H-elongata_contig558.13012.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=148bp
MGGLVDRGYKHVLVLMDDVSRFVWLEEAVSCLMKVAARAVLKCCASFGVP
KAFTSNGGTHFTGKMMQIVSSRLGVVHHFGVTNVSWSHGTVERMNREVLK
TFRAVLSERHRPPSEWPLVLGVVQWAFHSAYRERMGTTPFQMMTGRPP
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mRNA from alignment at H-elongata_contig558:5959..7634-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig558.13012.1 ID=mRNA_H-elongata_contig558.13012.1|Name=mRNA_H-elongata_contig558.13012.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1676bp|location=Sequence derived from alignment at H-elongata_contig558:5959..7634- (Himanthalia elongata Himel1 dioecious)
AGACACAATCCAGAGCGTGTGCGCGGACTGGTCGAGATGCGCCGGCCAGA GACGGTGGGCGAGCTGATGCAATTTTTACGGGCAACGAATTGGATGCGCT TGTCACTGCCTCACATGGCGGAAAATGTGGCACCGCTTCGCGCGTTGATG AAACTGCGGCTGAAGGGCACGAGCTGAATGAAACGAGTGGCGTCGCGGCG GGCTTTAATGGATAGTGATTAGACGCCGGAGCGGGTGGAAGCCTGAGACA ACTCCCGCGAGATGTTAATGAATGCGGTTGAGTTGAGCTTCCGGCGGCCG GACGACTGCCGCGCTTTAATGTTCCCGGATGCGAGCGACCTGTTTTGGGG GTGTTGCTTGACACAAGTACCGGAGGAGGAGCTGGTGGCGATGTTATCTT TCATGGATACGAGCCATGAGCCTCTCGGTTTCCTGAGTGTTGTTTTCCGA GGATCGCAGCTGTGTTGGCCCATGATGGATAAGGAATCTTTCGCCATTCT GAGCGCTTTTCAGTGCGTACCGTACTTGCTGTGGGATGGCTCGAACATAT TTTGCGACCATCGCAACCTGGCGGACATCTTCAGCCCGCAATCGTGCGGC ATGGCGCTAAGCAAGGCTGCGTCGCAACGCCTCGCCGGGTGGCTTGTATG CATGAACCAGTTCAACTACGTGATCCAGCATATCCCCGGGGAGGACAATA ACTGGGGTGACCTGCTGTCGAGGTGGCGGGTGTTGGATTCCGAAGGTTCC CTAGTACGCGCGAATGTGATTGCGGTGGTTGCTCCGTCGATAGAAGACTA CCAGATGCCGTCAAAAAGTGAAATTAAGGACAGACAGGACGCGGTGGCGC GCGGTCAAATTGAAGTGGCGACCTCGTTGAGAATTATGACTCGTGGTGAG CATGAATTGTACTGCGTGTCATACCAAGGGAGAATGGTGTTGTGGGTCCC TGAGGAGGAACGTGTGCTACAAGCACGATTAATGGCGTGTGCGTACATGC AAGATGCGGGCACCGTCGCGTTCGGGGAACGACCCATCGCCTCGGGGCAT ACTGTGCGTGGAATAATATTGAGAATGACATAGCGGAATTCGTCCGCCAG TGTCTACACTGCGTCGATTCGAAAGCGGGCAATGCTATGCCACGTCCCCT AGGCGATCTAGTACATGGTTCGTAAGTGGGTGACGTGCTCCATTTCGATT ACCTCAGTTCGGGGGAAAGCGAGGCCATCGATATGGGTGGTTTGGTCGAC AGGGGTTATAAGCATGTGCTAGTGCTGATGGATGACGTGAGCCGGTTCGT CTGGCTGGAAGAGGCCGTGTCGTGCTTGATGAAGGTGGCGGCGCGTGCCG TGCTGAAGTGTTGTGCTTCGTTTGGGGTGCCCAAGGCGTTCACCAGTAAT GGTGGAACGCATTTTACCGGGAAAATGATGCAGATTGTGTCGTCACGATT GGGGGTGGTCCACCATTTTGGTGTGACGAATGTTTCGTGGTCACACGGGA CGGTGGAACGGATGAACCGTGAAGTCTTGAAGACGTTCCGTGCGGTCCTC AGTGAAAGGCATAGGCCCCCGAGCGAGTGGCCGTTGGTATTGGGTGTTGT GCAATGGGCTTTCCATTCGGCGTATCGGGAGCGCATGGGGACGACGCCAT TTCAGATGATGACAGGTCGACCTCCT
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Coding sequence (CDS) from alignment at H-elongata_contig558:5959..7634-

>mRNA_H-elongata_contig558.13012.1 ID=mRNA_H-elongata_contig558.13012.1|Name=mRNA_H-elongata_contig558.13012.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=888bp|location=Sequence derived from alignment at H-elongata_contig558:5959..7634- (Himanthalia elongata Himel1 dioecious)
ATGGGTGGTTTGGTCGACAGGGGTTATAAGCATGTGCTAGTGCTGATGGA
TGACGTGAGCCGGTTCGTCTGGCTGGAAGAGGCCGTGTCGTGCTTGATGA
AGGTGGCGGCGCGTGCCGTGCTGAAGTGTTGTGCTTCGTTTGGGGTGCCC
AAGGCGTTCACCAGTAATGGTGGAACGCATTTTACCGGGAAAATGATGCA
GATTGTGTCGTCACGATTGGGGGTGGTCCACCATTTTGGTGTGACGAATG
TTTCGTGGTCACACGGGACGGTGGAACGGATGAACCGTGAAGTCTTGAAG
ACGTTCCGTGCGGTCCTCAGTGAAAGGCATAGGCCCCCGAGCGAGTGGCC
GTTGGTATTGGGTGTTGTGCAATGGGCTTTCCATTCGGCGTATCGGGAGC
GCATGGGGACGACGCCATTTCAGATGATGACAGGTCGACCTCCTATGGGT
GGTTTGGTCGACAGGGGTTATAAGCATGTGCTAGTGCTGATGGATGACGT
GAGCCGGTTCGTCTGGCTGGAAGAGGCCGTGTCGTGCTTGATGAAGGTGG
CGGCGCGTGCCGTGCTGAAGTGTTGTGCTTCGTTTGGGGTGCCCAAGGCG
TTCACCAGTAATGGTGGAACGCATTTTACCGGGAAAATGATGCAGATTGT
GTCGTCACGATTGGGGGTGGTCCACCATTTTGGTGTGACGAATGTTTCGT
GGTCACACGGGACGGTGGAACGGATGAACCGTGAAGTCTTGAAGACGTTC
CGTGCGGTCCTCAGTGAAAGGCATAGGCCCCCGAGCGAGTGGCCGTTGGT
ATTGGGTGTTGTGCAATGGGCTTTCCATTCGGCGTATCGGGAGCGCATGG
GGACGACGCCATTTCAGATGATGACAGGTCGACCTCCT
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