mRNA_H-elongata_contig55741.13003.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig55741.13003.1
Unique NamemRNA_H-elongata_contig55741.13003.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig55741.13003.1 vs. uniprot
Match: B9S233_RICCO (HSF_DOMAIN domain-containing protein n=1 Tax=Ricinus communis TaxID=3988 RepID=B9S233_RICCO)

HSP 1 Score: 72.8 bits (177), Expect = 3.730e-15
Identity = 33/69 (47.83%), Postives = 55/69 (79.71%), Query Frame = 1 
Query:   22 MQLSPIAPFVSKMYGIVNEESTD-IVSWSSSDGEDTFVIKHVGVFQEQVLPRFFSHRNYASFVRQLNNH 225
            M+ + + PF+SK Y +V++ ST+ +VSWSSSD  ++F++ +VG FQ+++LP++F H N++SFVRQLN +
Sbjct:    1 MESNTVPPFLSKSYDMVDDPSTNSVVSWSSSD--NSFIVWNVGEFQKELLPKYFKHNNFSSFVRQLNTY 67
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BLAST of mRNA_H-elongata_contig55741.13003.1 vs. uniprot
Match: UPI0007721EB2 (heat stress transcription factor A-1b isoform X2 n=1 Tax=Ricinus communis TaxID=3988 RepID=UPI0007721EB2)

HSP 1 Score: 77.0 bits (188), Expect = 1.100e-14
Identity = 36/74 (48.65%), Postives = 58/74 (78.38%), Query Frame = 1 
Query:   22 MQLSPIAPFVSKMYGIVNEESTD-IVSWSSSDGEDTFVIKHVGVFQEQVLPRFFSHRNYASFVRQLNNHGECKV 240
            M+ + + PF+SK Y +V++ ST+ +VSWSSSD  ++F++ +VG FQ+++LP++F H N++SFVRQLN +G  KV
Sbjct:    1 MESNTVPPFLSKSYDMVDDPSTNSVVSWSSSD--NSFIVWNVGEFQKELLPKYFKHNNFSSFVRQLNTYGFRKV 72
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BLAST of mRNA_H-elongata_contig55741.13003.1 vs. uniprot
Match: A0A0V0GSL0_SOLCH (Putative ovule protein (Fragment) n=1 Tax=Solanum chacoense TaxID=4108 RepID=A0A0V0GSL0_SOLCH)

HSP 1 Score: 72.0 bits (175), Expect = 2.230e-14
Identity = 34/70 (48.57%), Postives = 51/70 (72.86%), Query Frame = 1 
Query:   34 PIAPFVSKMYGIVNEESTD-IVSWSSSDGEDTFVIKHVGVFQEQVLPRFFSHRNYASFVRQLNNHGECKV 240
            P+ PF+SK Y +V++ STD +VSWS S+  ++FV+ +V  F   +LP++F H N++SFVRQLN +G  KV
Sbjct:    6 PLPPFLSKTYDMVDDRSTDSVVSWSKSN--NSFVVWNVPEFSRDILPKYFKHNNFSSFVRQLNTYGYKKV 73
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BLAST of mRNA_H-elongata_contig55741.13003.1 vs. uniprot
Match: A0A0V0HBA1_SOLCH (Putative ovule protein (Fragment) n=1 Tax=Solanum chacoense TaxID=4108 RepID=A0A0V0HBA1_SOLCH)

HSP 1 Score: 72.0 bits (175), Expect = 2.800e-13
Identity = 34/70 (48.57%), Postives = 51/70 (72.86%), Query Frame = 1 
Query:   34 PIAPFVSKMYGIVNEESTD-IVSWSSSDGEDTFVIKHVGVFQEQVLPRFFSHRNYASFVRQLNNHGECKV 240
            P+ PF+SK Y +V++ STD +VSWS S+  ++FV+ +V  F   +LP++F H N++SFVRQLN +G  KV
Sbjct:   11 PLPPFLSKTYDMVDDRSTDSVVSWSKSN--NSFVVWNVPEFSRDILPKYFKHNNFSSFVRQLNTYGYKKV 78
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BLAST of mRNA_H-elongata_contig55741.13003.1 vs. uniprot
Match: A0A7C8YQ30_OPUST (HSF_DOMAIN domain-containing protein (Fragment) n=1 Tax=Opuntia streptacantha TaxID=393608 RepID=A0A7C8YQ30_OPUST)

HSP 1 Score: 70.1 bits (170), Expect = 4.470e-13
Identity = 33/69 (47.83%), Postives = 52/69 (75.36%), Query Frame = 1 
Query:   37 IAPFVSKMYGIVNEESTD-IVSWSSSDGEDTFVIKHVGVFQEQVLPRFFSHRNYASFVRQLNNHGECKV 240
            +APF++K Y +V++ STD ++SW+ S+  D+FVI H+  F   +LP+FF H+N++SF+RQLN +G  KV
Sbjct:   22 VAPFLAKCYEMVDDPSTDCVISWNQSN--DSFVIWHMTEFSRDLLPKFFKHQNFSSFMRQLNIYGFRKV 88
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BLAST of mRNA_H-elongata_contig55741.13003.1 vs. uniprot
Match: A0A6A6M427_HEVBR (HSF_DOMAIN domain-containing protein n=3 Tax=Hevea brasiliensis TaxID=3981 RepID=A0A6A6M427_HEVBR)

HSP 1 Score: 72.4 bits (176), Expect = 4.620e-13
Identity = 36/75 (48.00%), Postives = 55/75 (73.33%), Query Frame = 1 
Query:   19 SMQLSPIAPFVSKMYGIVNEESTD-IVSWSSSDGEDTFVIKHVGVFQEQVLPRFFSHRNYASFVRQLNNHGECKV 240
            S+  + + PF+SK Y +V++ ST+ +VSWSSSD  ++FV+ +V  FQ  +LP++F H N++SFVRQLN +G  KV
Sbjct:    3 SLTANSVPPFLSKTYDMVDDPSTNSVVSWSSSD--NSFVVWNVPEFQRDLLPKYFKHNNFSSFVRQLNTYGFRKV 75
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BLAST of mRNA_H-elongata_contig55741.13003.1 vs. uniprot
Match: A0A2P2JGW8_RHIMU (HSF_DOMAIN domain-containing protein n=1 Tax=Rhizophora mucronata TaxID=61149 RepID=A0A2P2JGW8_RHIMU)

HSP 1 Score: 67.4 bits (163), Expect = 5.670e-13
Identity = 32/62 (51.61%), Postives = 47/62 (75.81%), Query Frame = 1 
Query:   37 IAPFVSKMYGIVNEESTD-IVSWSSSDGEDTFVIKHVGVFQEQVLPRFFSHRNYASFVRQLN 219
            IAPF+ K Y +V++ESTD I+ WS S  +D+FVI+ +  F  Q+LP++F H N++SF+RQLN
Sbjct:   12 IAPFLKKCYEMVDDESTDSIICWSQS--KDSFVIRDMTEFSVQLLPKYFKHNNFSSFIRQLN 71
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BLAST of mRNA_H-elongata_contig55741.13003.1 vs. uniprot
Match: A0A2C9VA84_MANES (HSF_DOMAIN domain-containing protein n=1 Tax=Manihot esculenta TaxID=3983 RepID=A0A2C9VA84_MANES)

HSP 1 Score: 72.0 bits (175), Expect = 6.390e-13
Identity = 35/72 (48.61%), Postives = 55/72 (76.39%), Query Frame = 1 
Query:   28 LSPIAPFVSKMYGIVNEESTD-IVSWSSSDGEDTFVIKHVGVFQEQVLPRFFSHRNYASFVRQLNNHGECKV 240
            ++ + PF+SK Y +V++ ST+ +VSWSSSD  ++FV+ +V  FQ+ +LP++F H N++SFVRQLN +G  KV
Sbjct:    6 MNSVPPFLSKTYDMVDDPSTNSVVSWSSSD--NSFVVWNVPEFQKDLLPKYFKHSNFSSFVRQLNTYGFRKV 75
[Close]
BLAST of mRNA_H-elongata_contig55741.13003.1 vs. uniprot
Match: A0A6P4CK39_ARADU (heat stress transcription factor A-1b n=4 Tax=Arachis TaxID=3817 RepID=A0A6P4CK39_ARADU)

HSP 1 Score: 72.0 bits (175), Expect = 6.390e-13
Identity = 35/75 (46.67%), Postives = 54/75 (72.00%), Query Frame = 1 
Query:   19 SMQLSPIAPFVSKMYGIVNEESTD-IVSWSSSDGEDTFVIKHVGVFQEQVLPRFFSHRNYASFVRQLNNHGECKV 240
            S  ++ +APF+SK Y +V++ STD +VSWS  D  ++FV+ +V  F  ++LP++F H N++SFVRQLN +G  KV
Sbjct:    3 SANVNGVAPFLSKTYDMVDDSSTDSVVSWS--DNSNSFVVWNVPEFASRILPKYFKHNNFSSFVRQLNTYGFRKV 75
[Close]
BLAST of mRNA_H-elongata_contig55741.13003.1 vs. uniprot
Match: UPI00053F3884 (heat stress transcription factor A-1e n=1 Tax=Beta vulgaris subsp. vulgaris TaxID=3555 RepID=UPI00053F3884)

HSP 1 Score: 72.0 bits (175), Expect = 6.410e-13
Identity = 36/68 (52.94%), Postives = 53/68 (77.94%), Query Frame = 1 
Query:   40 APFVSKMYGIVNEESTD-IVSWSSSDGEDTFVIKHVGVFQEQVLPRFFSHRNYASFVRQLNNHGECKV 240
            APF+SK Y +V++ STD +VSWSS++   +FV+ +V  F +++LP+FF H+N+ASFVRQLN +G  KV
Sbjct:   28 APFLSKTYDMVDDISTDSVVSWSSNN--KSFVVWNVPEFSKELLPKFFKHKNFASFVRQLNTYGFRKV 93
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig55741.13003.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
B9S233_RICCO3.730e-1547.83HSF_DOMAIN domain-containing protein n=1 Tax=Ricin... [more]
UPI0007721EB21.100e-1448.65heat stress transcription factor A-1b isoform X2 n... [more]
A0A0V0GSL0_SOLCH2.230e-1448.57Putative ovule protein (Fragment) n=1 Tax=Solanum ... [more]
A0A0V0HBA1_SOLCH2.800e-1348.57Putative ovule protein (Fragment) n=1 Tax=Solanum ... [more]
A0A7C8YQ30_OPUST4.470e-1347.83HSF_DOMAIN domain-containing protein (Fragment) n=... [more]
A0A6A6M427_HEVBR4.620e-1348.00HSF_DOMAIN domain-containing protein n=3 Tax=Hevea... [more]
A0A2P2JGW8_RHIMU5.670e-1351.61HSF_DOMAIN domain-containing protein n=1 Tax=Rhizo... [more]
A0A2C9VA84_MANES6.390e-1348.61HSF_DOMAIN domain-containing protein n=1 Tax=Manih... [more]
A0A6P4CK39_ARADU6.390e-1346.67heat stress transcription factor A-1b n=4 Tax=Arac... [more]
UPI00053F38846.410e-1352.94heat stress transcription factor A-1e n=1 Tax=Beta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig55741contigH-elongata_contig55741:3582..3821 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score74.3
Seed ortholog evalue2.6e-11
Seed eggNOG ortholog4006.Lus10040911
KEGG koko:K09414,ko:K09419
KEGG Pathwayko04212,ko05134,map04212,map05134
GOsGO:0003674,GO:0003676,GO:0003677,GO:0003700,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006355,GO:0006950,GO:0008150,GO:0009266,GO:0009408,GO:0009628,GO:0009889,GO:0010468,GO:0010556,GO:0019219,GO:0019222,GO:0031323,GO:0031326,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044464,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051252,GO:0060255,GO:0065007,GO:0080090,GO:0097159,GO:0140110,GO:1901363,GO:1903506,GO:2000112,GO:2001141
EggNOG free text desc.Heat stress transcription factor
EggNOG OGs37HIT@33090,3G7X5@35493,4JTT7@91835,COG5169@1,KOG0627@2759
COG Functional cat.K
Best tax levelfabids
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03000
Hectar predicted targeting categoryother localisation
Exons1
Model size240
Cds size219
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930908.5760026-CDS-H-elongata_contig55741:3581..38001622930908.5760026-CDS-H-elongata_contig55741:3581..3800Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55741 3582..3800 -
1691679620.2894382-CDS-H-elongata_contig55741:3581..38001691679620.2894382-CDS-H-elongata_contig55741:3581..3800Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55741 3582..3800 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930908.5881424-UTR-H-elongata_contig55741:3800..38211622930908.5881424-UTR-H-elongata_contig55741:3800..3821Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig55741 3801..3821 -
1691679620.3051755-UTR-H-elongata_contig55741:3800..38211691679620.3051755-UTR-H-elongata_contig55741:3800..3821Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig55741 3801..3821 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig55741.13003.1prot_H-elongata_contig55741.13003.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig55741 3582..3800 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig55741.13003.1

>prot_H-elongata_contig55741.13003.1 ID=prot_H-elongata_contig55741.13003.1|Name=mRNA_H-elongata_contig55741.13003.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=73bp
MQLSPIAPFVSKMYGIVNEESTDIVSWSSSDGEDTFVIKHVGVFQEQVLP
RFFSHRNYASFVRQLNNHGECKV
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mRNA from alignment at H-elongata_contig55741:3582..3821-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig55741.13003.1 ID=mRNA_H-elongata_contig55741.13003.1|Name=mRNA_H-elongata_contig55741.13003.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=240bp|location=Sequence derived from alignment at H-elongata_contig55741:3582..3821- (Himanthalia elongata Himel1 dioecious)
CAGTCATCAACCTCGAGCTCAATGCAGCTCTCGCCGATCGCCCCGTTCGT
CAGCAAGATGTACGGGATCGTAAACGAGGAATCGACAGATATTGTTTCGT
GGTCAAGCTCGGATGGAGAAGACACATTTGTCATCAAGCACGTGGGCGTT
TTCCAGGAACAAGTCCTGCCTCGCTTCTTCAGCCATAGGAATTACGCCTC
GTTCGTAAGGCAGCTGAACAACCACGGTGAGTGCAAAGTG
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Coding sequence (CDS) from alignment at H-elongata_contig55741:3582..3821-

>mRNA_H-elongata_contig55741.13003.1 ID=mRNA_H-elongata_contig55741.13003.1|Name=mRNA_H-elongata_contig55741.13003.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=438bp|location=Sequence derived from alignment at H-elongata_contig55741:3582..3821- (Himanthalia elongata Himel1 dioecious)
ATGCAGCTCTCGCCGATCGCCCCGTTCGTCAGCAAGATGTACGGGATCGT
AAACGAGGAATCGACAGATATTGTTTCGTGGTCAAGCTCGGATGGAGAAG
ACACATTTGTCATCAAGCACGTGGGCGTTTTCCAGGAACAAGTCCTGCCT
CGCTTCTTCAGCCATAGGAATTACGCCTCGTTCGTAAGGCAGCTGAACAA
CCACGGTGAGTGCAAAGTGATGCAGCTCTCGCCGATCGCCCCGTTCGTCA
GCAAGATGTACGGGATCGTAAACGAGGAATCGACAGATATTGTTTCGTGG
TCAAGCTCGGATGGAGAAGACACATTTGTCATCAAGCACGTGGGCGTTTT
CCAGGAACAAGTCCTGCCTCGCTTCTTCAGCCATAGGAATTACGCCTCGT
TCGTAAGGCAGCTGAACAACCACGGTGAGTGCAAAGTG
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