mRNA_H-elongata_contig55696.12996.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig55696.12996.1
Unique NamemRNA_H-elongata_contig55696.12996.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig55696.12996.1 vs. uniprot
Match: D7G8L3_ECTSI (Rad60-SLD domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8L3_ECTSI)

HSP 1 Score: 103 bits (256), Expect = 4.990e-24
Identity = 48/76 (63.16%), Postives = 59/76 (77.63%), Query Frame = 1 
Query:    4 KFKTFMEGFVSAIGIPLERASECVFMLDGDRLNPEGTPKGEDLQDEDQIDAKFPTDLMTSVQASPETVNLMAPPKK 231
            KF  FME F   +GIP ERASECVF  DGD+LNP+GTP+GED++ E+ IDAKFP D+M SVQA+P  ++L AP KK
Sbjct:  173 KFSAFMEAFNEKVGIPQERASECVFKFDGDKLNPDGTPEGEDMEPEEIIDAKFPADVMNSVQAAPTELSLAAPKKK 248
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BLAST of mRNA_H-elongata_contig55696.12996.1 vs. uniprot
Match: A0A6H5L2P0_9PHAE (Rad60-SLD domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2P0_9PHAE)

HSP 1 Score: 99.4 bits (246), Expect = 7.100e-22
Identity = 48/76 (63.16%), Postives = 58/76 (76.32%), Query Frame = 1 
Query:    4 KFKTFMEGFVSAIGIPLERASECVFMLDGDRLNPEGTPKGEDLQDEDQIDAKFPTDLMTSVQASPETVNLMAPPKK 231
            KF  FME F   +GIP ERASE VF  DGD+LNP+GTP+GED++ E+ IDAKFP DLM SVQA+P  ++L AP KK
Sbjct:  344 KFSAFMEAFNEKVGIPQERASEGVFKFDGDKLNPDGTPEGEDMESEEIIDAKFPADLMNSVQAAPTELSLGAPKKK 419
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig55696.12996.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G8L3_ECTSI4.990e-2463.16Rad60-SLD domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5L2P0_9PHAE7.100e-2263.16Rad60-SLD domain-containing protein n=1 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig55696contigH-elongata_contig55696:28..639 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size378
Cds size378
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930907.9618034-CDS-H-elongata_contig55696:27..1471622930907.9618034-CDS-H-elongata_contig55696:27..147Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55696 28..147 +
1691679620.039716-CDS-H-elongata_contig55696:27..1471691679620.039716-CDS-H-elongata_contig55696:27..147Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55696 28..147 +
1622930907.973688-CDS-H-elongata_contig55696:381..6391622930907.973688-CDS-H-elongata_contig55696:381..639Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55696 382..639 +
1691679620.0482905-CDS-H-elongata_contig55696:381..6391691679620.0482905-CDS-H-elongata_contig55696:381..639Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55696 382..639 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig55696.12996.1prot_H-elongata_contig55696.12996.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig55696 28..639 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig55696.12996.1

>prot_H-elongata_contig55696.12996.1 ID=prot_H-elongata_contig55696.12996.1|Name=mRNA_H-elongata_contig55696.12996.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=126bp
MKFKTFMEGFVSAIGIPLERASECVFMLDGDRLNPEGTPKGEDLQDEDQI
DAKFPTDLMTSVQASPETVNLMAPPKKGATAPQTNRGVPTPDVSVRTNTQ
RMSGGSGSVPDGGGDSDSDGVIVLD*
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mRNA from alignment at H-elongata_contig55696:28..639+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig55696.12996.1 ID=mRNA_H-elongata_contig55696.12996.1|Name=mRNA_H-elongata_contig55696.12996.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=612bp|location=Sequence derived from alignment at H-elongata_contig55696:28..639+ (Himanthalia elongata Himel1 dioecious)
ATGAAGTTCAAGACCTTCATGGAGGGTTTCGTTTCTGCTATTGGGATACC
ATTGGAGCGCGCCAGCGAATGCGTTTTCATGTTGGACGGCGATAGGCTCA
ATCCCGAGGGCACTCCAAAGGTGTGTCGGGCTGTGATTAATAGTTCGCAG
ATACGCGGGAGTCGCGGCGCAGACTGTTTCTGATTATCGCTTTTATCAAG
AGACGGCTTATTGAAATCCTGCGACCTGGTAAAGATGTACAGGCAAGGTA
GCGGTACAACACACGGCTGTTGCCTGTACGATATGGACCGAGCGCATCTA
AATATAGATATATCTCTTCCTTTCTGTGCGTTTCGTCGCTTTCAATGGGA
AAAGGGCGAAGATCTTCAAGACGAGGATCAGATTGACGCCAAGTTCCCCA
CCGACCTCATGACCAGCGTCCAAGCATCCCCGGAAACGGTGAATTTAATG
GCGCCTCCAAAGAAGGGAGCGACCGCCCCCCAGACGAATCGCGGGGTGCC
TACGCCTGATGTGTCGGTGCGAACAAATACACAGAGGATGAGTGGAGGCA
GTGGCAGTGTTCCCGATGGCGGAGGCGACAGCGACAGCGATGGTGTTATA
GTCCTGGATTGA
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Coding sequence (CDS) from alignment at H-elongata_contig55696:28..639+

>mRNA_H-elongata_contig55696.12996.1 ID=mRNA_H-elongata_contig55696.12996.1|Name=mRNA_H-elongata_contig55696.12996.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=756bp|location=Sequence derived from alignment at H-elongata_contig55696:28..639+ (Himanthalia elongata Himel1 dioecious)
ATGAAGTTCAAGACCTTCATGGAGGGTTTCGTTTCTGCTATTGGGATACC
ATTGGAGCGCGCCAGCGAATGCGTTTTCATGTTGGACGGCGATAGGCTCA
ATCCCGAGGGCACTCCAAAGATGAAGTTCAAGACCTTCATGGAGGGTTTC
GTTTCTGCTATTGGGATACCATTGGAGCGCGCCAGCGAATGCGTTTTCAT
GTTGGACGGCGATAGGCTCAATCCCGAGGGCACTCCAAAGGGCGAAGATC
TTCAAGACGAGGATCAGATTGACGCCAAGTTCCCCACCGACCTCATGACC
AGCGTCCAAGCATCCCCGGAAACGGTGAATTTAATGGCGCCTCCAAAGAA
GGGAGCGACCGCCCCCCAGACGAATCGCGGGGTGCCTACGCCTGATGTGT
CGGTGCGAACAAATACACAGAGGATGAGTGGAGGCAGTGGCAGTGTTCCC
GATGGCGGAGGCGACAGCGACAGCGATGGTGTTATAGTCCTGGATTGAGG
CGAAGATCTTCAAGACGAGGATCAGATTGACGCCAAGTTCCCCACCGACC
TCATGACCAGCGTCCAAGCATCCCCGGAAACGGTGAATTTAATGGCGCCT
CCAAAGAAGGGAGCGACCGCCCCCCAGACGAATCGCGGGGTGCCTACGCC
TGATGTGTCGGTGCGAACAAATACACAGAGGATGAGTGGAGGCAGTGGCA
GTGTTCCCGATGGCGGAGGCGACAGCGACAGCGATGGTGTTATAGTCCTG
GATTGA
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