prot_H-elongata_contig55696.12996.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig55696.12996.1
Unique Nameprot_H-elongata_contig55696.12996.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length126
Homology
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BLAST of mRNA_H-elongata_contig55696.12996.1 vs. uniprot
Match: D7G8L3_ECTSI (Rad60-SLD domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8L3_ECTSI)

HSP 1 Score: 103 bits (256), Expect = 4.990e-24
Identity = 48/76 (63.16%), Postives = 59/76 (77.63%), Query Frame = 0 
Query:    2 KFKTFMEGFVSAIGIPLERASECVFMLDGDRLNPEGTPKGEDLQDEDQIDAKFPTDLMTSVQASPETVNLMAPPKK 77
            KF  FME F   +GIP ERASECVF  DGD+LNP+GTP+GED++ E+ IDAKFP D+M SVQA+P  ++L AP KK
Sbjct:  173 KFSAFMEAFNEKVGIPQERASECVFKFDGDKLNPDGTPEGEDMEPEEIIDAKFPADVMNSVQAAPTELSLAAPKKK 248
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BLAST of mRNA_H-elongata_contig55696.12996.1 vs. uniprot
Match: A0A6H5L2P0_9PHAE (Rad60-SLD domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2P0_9PHAE)

HSP 1 Score: 99.4 bits (246), Expect = 7.100e-22
Identity = 48/76 (63.16%), Postives = 58/76 (76.32%), Query Frame = 0 
Query:    2 KFKTFMEGFVSAIGIPLERASECVFMLDGDRLNPEGTPKGEDLQDEDQIDAKFPTDLMTSVQASPETVNLMAPPKK 77
            KF  FME F   +GIP ERASE VF  DGD+LNP+GTP+GED++ E+ IDAKFP DLM SVQA+P  ++L AP KK
Sbjct:  344 KFSAFMEAFNEKVGIPQERASEGVFKFDGDKLNPDGTPEGEDMESEEIIDAKFPADLMNSVQAAPTELSLGAPKKK 419
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig55696.12996.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G8L3_ECTSI4.990e-2463.16Rad60-SLD domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5L2P0_9PHAE7.100e-2263.16Rad60-SLD domain-containing protein n=1 Tax=Ectoca... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR022617Rad60/SUMO-like domainPFAMPF11976Rad60-SLDcoord: 2..52
e-value: 1.9E-6
score: 27.6
NoneNo IPR availableGENE3D3.10.20.90coord: 1..54
e-value: 1.1E-7
score: 34.0
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 9..16
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..21
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 17..21
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 22..125
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..8
IPR029071Ubiquitin-like domain superfamilySUPERFAMILY54236Ubiquitin-likecoord: 2..52

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig55696contigH-elongata_contig55696:28..639 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig55696.12996.1mRNA_H-elongata_contig55696.12996.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig55696 28..639 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig55696.12996.1 ID=prot_H-elongata_contig55696.12996.1|Name=mRNA_H-elongata_contig55696.12996.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=126bp
MKFKTFMEGFVSAIGIPLERASECVFMLDGDRLNPEGTPKGEDLQDEDQI
DAKFPTDLMTSVQASPETVNLMAPPKKGATAPQTNRGVPTPDVSVRTNTQ
RMSGGSGSVPDGGGDSDSDGVIVLD*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR022617Rad60/SUMO-like_dom
IPR029071Ubiquitin-like_domsf