mRNA_H-elongata_contig55670.12992.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig55670.12992.1 vs. uniprot
Match: D8LRP2_ECTSI (Structural maintenance of chromosomes protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRP2_ECTSI) HSP 1 Score: 206 bits (525), Expect = 2.360e-59 Identity = 106/122 (86.89%), Postives = 114/122 (93.44%), Query Frame = 1
Query: 1 MGRLIKIEAENFKSYAGKQIIGPFKDFTAVIGPNGSGKSNLMDAISFVLGVQSRHLRSTKLSDLVFRADGNVPSSRRAVVKVVYMVGDGE-VDGFEDGEEIHFSRVISVAGSSSYRLNDKEV 363
MGRLI+IEAENFKSYAG QIIGPFKDFTAVIGPNG+GKSNLMDAISFVLGVQS+HLRSTKLSDLVFRADG VPSSRRA+VKVVYMVG+GE V G E G+E+HFSRVIS G+SSYRLNDKEV
Sbjct: 1 MGRLIRIEAENFKSYAGTQIIGPFKDFTAVIGPNGAGKSNLMDAISFVLGVQSKHLRSTKLSDLVFRADGAVPSSRRAMVKVVYMVGEGEEVGGQEAGDEVHFSRVISAGGASSYRLNDKEV 122
BLAST of mRNA_H-elongata_contig55670.12992.1 vs. uniprot
Match: A0A835ZAW7_9STRA (Structural maintenance of chromosomes protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAW7_9STRA) HSP 1 Score: 181 bits (460), Expect = 1.360e-50 Identity = 95/135 (70.37%), Postives = 104/135 (77.04%), Query Frame = 1
Query: 1 MGRLIKIEAENFKSYAGKQIIGPFKDFTAVIGPNGSGKSNLMDAISFVLGVQSRHLRSTKLSDLVF--------------RADGNVPSSRRAVVKVVYMVGDGEVDGFEDGEEIHFSRVISVAGSSSYRLNDKEV 363
MGRL++IE ENFKSYAG Q IGPF+DFTAVIGPNG+GKSNLMDAISFVLGVQSRHLRS KL DLVF RA G S RRA+VKVVY VG EV+G + GEE+HFSRVIS G+SSYRLNDKEV
Sbjct: 12 MGRLVRIELENFKSYAGSQTIGPFRDFTAVIGPNGAGKSNLMDAISFVLGVQSRHLRSQKLEDLVFSACVLRVPVRRRCHRASGGSASRRRAMVKVVYQVGKNEVEGMDAGEELHFSRVISAGGASSYRLNDKEV 146
BLAST of mRNA_H-elongata_contig55670.12992.1 vs. uniprot
Match: A0A812R846_9DINO (Smc1a protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812R846_9DINO) HSP 1 Score: 152 bits (385), Expect = 1.670e-40 Identity = 76/121 (62.81%), Postives = 95/121 (78.51%), Query Frame = 1
Query: 1 MGRLIKIEAENFKSYAGKQIIGPFKDFTAVIGPNGSGKSNLMDAISFVLGVQSRHLRSTKLSDLVFRADGNVPSSRRAVVKVVYMVGDGEVDGFEDGEEIHFSRVISVAGSSSYRLNDKEV 363
MGR+ +E E+FKSYAGKQ+IGPF+ FTAVIGPNG+GKSNLMDAISFVLG+Q+RHLR L DLVF+ +G A VK+VY+V DGEV G G E+ F+R+I+ AG S+Y+L+DKEV
Sbjct: 1 MGRIDHLEVEDFKSYAGKQVIGPFRGFTAVIGPNGAGKSNLMDAISFVLGLQARHLRGNTLKDLVFKVEGATGGPSSASVKLVYVVEDGEVAGKAAGTELVFTRLITPAGVSTYKLDDKEV 121
BLAST of mRNA_H-elongata_contig55670.12992.1 vs. uniprot
Match: A0A4D9CMM9_9STRA (Structural maintenance of chromosomes protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CMM9_9STRA) HSP 1 Score: 148 bits (374), Expect = 5.240e-39 Identity = 77/125 (61.60%), Postives = 97/125 (77.60%), Query Frame = 1
Query: 1 MGRLIKIEAENFKSYAGKQIIGPFKDFTAVIGPNGSGKSNLMDAISFVLGVQSRHLRSTKLSDLVFRAD---GNVPSSRRAVVKVVYMVGDGE-VDGFEDGEEIHFSRVISVAGSSSYRLNDKEV 363
MGRL ++ ENFKSY G Q+IGPF+DFTA+IGPNGSGKSNLMDAISFVLGVQSR LRS+++ +L+FRAD G+V SRRA V+++Y + + E V G+E G + F R IS G SYR+N+KEV
Sbjct: 1 MGRLERVTLENFKSYPGTQVIGPFRDFTAIIGPNGSGKSNLMDAISFVLGVQSRQLRSSQMKELIFRADDLQGSV--SRRAFVELIYQMDEDETVPGYETGASLSFKRTISPTGVGSYRINEKEV 123
BLAST of mRNA_H-elongata_contig55670.12992.1 vs. uniprot
Match: A0A2D4CAS2_PYTIN (Structural maintenance of chromosomes protein, putative n=2 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CAS2_PYTIN) HSP 1 Score: 142 bits (357), Expect = 1.010e-36 Identity = 71/121 (58.68%), Postives = 89/121 (73.55%), Query Frame = 1
Query: 1 MGRLIKIEAENFKSYAGKQIIGPFKDFTAVIGPNGSGKSNLMDAISFVLGVQSRHLRSTKLSDLVFRADGNVPSSRRAVVKVVYMVGDGEVDGFEDGEEIHFSRVISVAGSSSYRLNDKEV 363
MGR+ ++E ENFKSY G IGPFK FTAVIGPNGSGKSNLMDAISFVLGV SR LRS +L DL+ + G V S +A V +VY + GE+DG G+E+ F+R+IS G SYR+++ +V
Sbjct: 1 MGRITRLELENFKSYGGAHXIGPFKRFTAVIGPNGSGKSNLMDAISFVLGVNSRQLRSNQLKDLIHKGPG-VSDSSKAYVTLVYELDAGEIDGATQGQELRFTRMISAKGVGSYRIDESDV 120
BLAST of mRNA_H-elongata_contig55670.12992.1 vs. uniprot
Match: A0A7S2SMC1_9STRA (Structural maintenance of chromosomes protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2SMC1_9STRA) HSP 1 Score: 141 bits (356), Expect = 1.400e-36 Identity = 74/122 (60.66%), Postives = 88/122 (72.13%), Query Frame = 1
Query: 1 MGRLIKIEAENFKSYAGKQIIGPFKDFTAVIGPNGSGKSNLMDAISFVLGVQSRHLRSTKLSDLVFRADGNVPSSRR-AVVKVVYMVGDGEVDGFEDGEEIHFSRVISVAGSSSYRLNDKEV 363
MGR+I+IE E+FKSY G Q IGPFK+FTAVIGPNG+GKSNLMDAISFV+GVQ+R LR +L DLV+ ADG RR A V ++Y GE+ G G+E+ F R IS AGSS Y L K V
Sbjct: 1 MGRIIRIEVEDFKSYKGFQTIGPFKNFTAVIGPNGAGKSNLMDAISFVVGVQTRQLRGEQLKDLVYNADGKREEERRQAKVCLIYQPAAGEIKGVAPGQELSFERTISFAGSSKYCLQHKTV 122
BLAST of mRNA_H-elongata_contig55670.12992.1 vs. uniprot
Match: A0A482SNL3_9ARCH (Chromosome segregation protein SMC n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SNL3_9ARCH) HSP 1 Score: 141 bits (355), Expect = 1.880e-36 Identity = 69/121 (57.02%), Postives = 90/121 (74.38%), Query Frame = 1
Query: 1 MGRLIKIEAENFKSYAGKQIIGPFKDFTAVIGPNGSGKSNLMDAISFVLGVQSRHLRSTKLSDLVFRADGNVPSSRRAVVKVVYMVGDGEVDGFEDGEEIHFSRVISVAGSSSYRLNDKEV 363
MGRL+++E ENFKSYAG Q+IGPF DFT +IGPNG+GKSNLMDAISFVLG+QS+ LRST L DL+F D N RRA+V+++Y+V E+DG+ I F+R ++ G S Y+ D+ V
Sbjct: 1 MGRLLQLELENFKSYAGTQVIGPFYDFTCIIGPNGAGKSNLMDAISFVLGLQSKQLRSTNLKDLIFHKD-NAAQPRRAIVRLLYVVSKDELDGYPADTTIAFARSVTSNGVSVYQFQDQNV 120
BLAST of mRNA_H-elongata_contig55670.12992.1 vs. uniprot
Match: A0A2P2LWV7_RHIMU (Uncharacterized protein MANES_12G032800 n=1 Tax=Rhizophora mucronata TaxID=61149 RepID=A0A2P2LWV7_RHIMU) HSP 1 Score: 133 bits (334), Expect = 5.340e-35 Identity = 68/123 (55.28%), Postives = 88/123 (71.54%), Query Frame = 1
Query: 4 GRLIKIEAENFKSYAGKQIIGPFKDFTAVIGPNGSGKSNLMDAISFVLGVQSRHLRSTKLSDLVFRADGNVPSS--RRAVVKVVYMVGDGEVDGFEDGEEIHFSRVISVAGSSSYRLNDKEVH 366
G+++K+E ENFKSY G Q IGPFKDFTA+IGPNG+GKSNLMDAISFVLGV++ HLR +L DL++ D RRA V++VY +G+G EIHF+R I+ AG S YR++ K V+
Sbjct: 8 GKIVKLEMENFKSYKGMQTIGPFKDFTAIIGPNGAGKSNLMDAISFVLGVRTGHLRGGQLKDLIYAYDDREKEQKGRRAFVRLVYQLGNGS--------EIHFTRTITSAGGSEYRIDGKIVN 122
BLAST of mRNA_H-elongata_contig55670.12992.1 vs. uniprot
Match: A0A6A3J9J0_9STRA (Structural maintenance of chromosomes protein n=6 Tax=Phytophthora TaxID=4783 RepID=A0A6A3J9J0_9STRA) HSP 1 Score: 135 bits (341), Expect = 1.460e-34 Identity = 70/133 (52.63%), Postives = 94/133 (70.68%), Query Frame = 1
Query: 1 MGRLIKIEAENFKSYAGKQIIGPFKDFTAVIGPNGSGKSNLMDAISFVLGVQSRHLRSTKLSDLVFRA--DGNVPSSRRAVVKVVYMVGDGE----------VDGFEDGEEIHFSRVISVAGSSSYRLNDKEV 363
MGR+ ++E ENFKSY G ++GPF+ FTAV+GPNGSGKSNLMDAISFVLGV SRHLRST+L DL+ +A DG+ ++R AVV +VY + DGE +E+ F+R+IS G+ SYR++ ++V
Sbjct: 1 MGRIARLELENFKSYGGAHVVGPFQRFTAVVGPNGSGKSNLMDAISFVLGVHSRHLRSTQLKDLIHKAPTDGDTTNARAAVVTLVYELADGERAPSASRAAQXXXXXXHKEVQFTRLISHKGAGSYRVDGRDV 133
BLAST of mRNA_H-elongata_contig55670.12992.1 vs. uniprot
Match: A0A2R5GJT3_9STRA (Structural maintenance of chromosomes protein n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GJT3_9STRA) HSP 1 Score: 135 bits (341), Expect = 1.470e-34 Identity = 64/122 (52.46%), Postives = 91/122 (74.59%), Query Frame = 1
Query: 1 MGRLIKIEAENFKSYAGKQIIGPFKDFTAVIGPNGSGKSNLMDAISFVLGVQSRHLRSTKLSDLVFRADGNVPSSRR-AVVKVVYMVGDGEVDGFEDGEEIHFSRVISVAGSSSYRLNDKEV 363
MGR++++E ++FK+Y G Q +GPFK FTA++GPNG GKSNLMDAISFV+GVQ++HLR +L DLV+ ADG +RR A+V+++Y GE++G + GEEI F+R I+ G+ Y L + V
Sbjct: 1 MGRIVRVELKDFKTYRGAQTVGPFKPFTAIMGPNGGGKSNLMDAISFVVGVQTKHLRGEQLRDLVYNADGMREKTRREALVRLIYEPAAGELEGVKAGEEIEFTRTINANGTCKYMLQGRTV 122 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig55670.12992.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig55670.12992.1 >prot_H-elongata_contig55670.12992.1 ID=prot_H-elongata_contig55670.12992.1|Name=mRNA_H-elongata_contig55670.12992.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=124bp MGRLIKIEAENFKSYAGKQIIGPFKDFTAVIGPNGSGKSNLMDAISFVLGback to top mRNA from alignment at H-elongata_contig55670:2090..3784+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig55670.12992.1 ID=mRNA_H-elongata_contig55670.12992.1|Name=mRNA_H-elongata_contig55670.12992.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1695bp|location=Sequence derived from alignment at H-elongata_contig55670:2090..3784+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig55670:2090..3784+ >mRNA_H-elongata_contig55670.12992.1 ID=mRNA_H-elongata_contig55670.12992.1|Name=mRNA_H-elongata_contig55670.12992.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=744bp|location=Sequence derived from alignment at H-elongata_contig55670:2090..3784+ (Himanthalia elongata Himel1 dioecious)back to top |