prot_H-elongata_contig55670.12992.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig55670.12992.1
Unique Nameprot_H-elongata_contig55670.12992.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length124
Homology
BLAST of mRNA_H-elongata_contig55670.12992.1 vs. uniprot
Match: D8LRP2_ECTSI (Structural maintenance of chromosomes protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRP2_ECTSI)

HSP 1 Score: 206 bits (525), Expect = 2.360e-59
Identity = 106/122 (86.89%), Postives = 114/122 (93.44%), Query Frame = 0
Query:    1 MGRLIKIEAENFKSYAGKQIIGPFKDFTAVIGPNGSGKSNLMDAISFVLGVQSRHLRSTKLSDLVFRADGNVPSSRRAVVKVVYMVGDGE-VDGFEDGEEIHFSRVISVAGSSSYRLNDKEV 121
            MGRLI+IEAENFKSYAG QIIGPFKDFTAVIGPNG+GKSNLMDAISFVLGVQS+HLRSTKLSDLVFRADG VPSSRRA+VKVVYMVG+GE V G E G+E+HFSRVIS  G+SSYRLNDKEV
Sbjct:    1 MGRLIRIEAENFKSYAGTQIIGPFKDFTAVIGPNGAGKSNLMDAISFVLGVQSKHLRSTKLSDLVFRADGAVPSSRRAMVKVVYMVGEGEEVGGQEAGDEVHFSRVISAGGASSYRLNDKEV 122          
BLAST of mRNA_H-elongata_contig55670.12992.1 vs. uniprot
Match: A0A835ZAW7_9STRA (Structural maintenance of chromosomes protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAW7_9STRA)

HSP 1 Score: 181 bits (460), Expect = 1.360e-50
Identity = 95/135 (70.37%), Postives = 104/135 (77.04%), Query Frame = 0
Query:    1 MGRLIKIEAENFKSYAGKQIIGPFKDFTAVIGPNGSGKSNLMDAISFVLGVQSRHLRSTKLSDLVF--------------RADGNVPSSRRAVVKVVYMVGDGEVDGFEDGEEIHFSRVISVAGSSSYRLNDKEV 121
            MGRL++IE ENFKSYAG Q IGPF+DFTAVIGPNG+GKSNLMDAISFVLGVQSRHLRS KL DLVF              RA G   S RRA+VKVVY VG  EV+G + GEE+HFSRVIS  G+SSYRLNDKEV
Sbjct:   12 MGRLVRIELENFKSYAGSQTIGPFRDFTAVIGPNGAGKSNLMDAISFVLGVQSRHLRSQKLEDLVFSACVLRVPVRRRCHRASGGSASRRRAMVKVVYQVGKNEVEGMDAGEELHFSRVISAGGASSYRLNDKEV 146          
BLAST of mRNA_H-elongata_contig55670.12992.1 vs. uniprot
Match: A0A812R846_9DINO (Smc1a protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812R846_9DINO)

HSP 1 Score: 152 bits (385), Expect = 1.670e-40
Identity = 76/121 (62.81%), Postives = 95/121 (78.51%), Query Frame = 0
Query:    1 MGRLIKIEAENFKSYAGKQIIGPFKDFTAVIGPNGSGKSNLMDAISFVLGVQSRHLRSTKLSDLVFRADGNVPSSRRAVVKVVYMVGDGEVDGFEDGEEIHFSRVISVAGSSSYRLNDKEV 121
            MGR+  +E E+FKSYAGKQ+IGPF+ FTAVIGPNG+GKSNLMDAISFVLG+Q+RHLR   L DLVF+ +G       A VK+VY+V DGEV G   G E+ F+R+I+ AG S+Y+L+DKEV
Sbjct:    1 MGRIDHLEVEDFKSYAGKQVIGPFRGFTAVIGPNGAGKSNLMDAISFVLGLQARHLRGNTLKDLVFKVEGATGGPSSASVKLVYVVEDGEVAGKAAGTELVFTRLITPAGVSTYKLDDKEV 121          
BLAST of mRNA_H-elongata_contig55670.12992.1 vs. uniprot
Match: A0A4D9CMM9_9STRA (Structural maintenance of chromosomes protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CMM9_9STRA)

HSP 1 Score: 148 bits (374), Expect = 5.240e-39
Identity = 77/125 (61.60%), Postives = 97/125 (77.60%), Query Frame = 0
Query:    1 MGRLIKIEAENFKSYAGKQIIGPFKDFTAVIGPNGSGKSNLMDAISFVLGVQSRHLRSTKLSDLVFRAD---GNVPSSRRAVVKVVYMVGDGE-VDGFEDGEEIHFSRVISVAGSSSYRLNDKEV 121
            MGRL ++  ENFKSY G Q+IGPF+DFTA+IGPNGSGKSNLMDAISFVLGVQSR LRS+++ +L+FRAD   G+V  SRRA V+++Y + + E V G+E G  + F R IS  G  SYR+N+KEV
Sbjct:    1 MGRLERVTLENFKSYPGTQVIGPFRDFTAIIGPNGSGKSNLMDAISFVLGVQSRQLRSSQMKELIFRADDLQGSV--SRRAFVELIYQMDEDETVPGYETGASLSFKRTISPTGVGSYRINEKEV 123          
BLAST of mRNA_H-elongata_contig55670.12992.1 vs. uniprot
Match: A0A2D4CAS2_PYTIN (Structural maintenance of chromosomes protein, putative n=2 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CAS2_PYTIN)

HSP 1 Score: 142 bits (357), Expect = 1.010e-36
Identity = 71/121 (58.68%), Postives = 89/121 (73.55%), Query Frame = 0
Query:    1 MGRLIKIEAENFKSYAGKQIIGPFKDFTAVIGPNGSGKSNLMDAISFVLGVQSRHLRSTKLSDLVFRADGNVPSSRRAVVKVVYMVGDGEVDGFEDGEEIHFSRVISVAGSSSYRLNDKEV 121
            MGR+ ++E ENFKSY G   IGPFK FTAVIGPNGSGKSNLMDAISFVLGV SR LRS +L DL+ +  G V  S +A V +VY +  GE+DG   G+E+ F+R+IS  G  SYR+++ +V
Sbjct:    1 MGRITRLELENFKSYGGAHXIGPFKRFTAVIGPNGSGKSNLMDAISFVLGVNSRQLRSNQLKDLIHKGPG-VSDSSKAYVTLVYELDAGEIDGATQGQELRFTRMISAKGVGSYRIDESDV 120          
BLAST of mRNA_H-elongata_contig55670.12992.1 vs. uniprot
Match: A0A7S2SMC1_9STRA (Structural maintenance of chromosomes protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2SMC1_9STRA)

HSP 1 Score: 141 bits (356), Expect = 1.400e-36
Identity = 74/122 (60.66%), Postives = 88/122 (72.13%), Query Frame = 0
Query:    1 MGRLIKIEAENFKSYAGKQIIGPFKDFTAVIGPNGSGKSNLMDAISFVLGVQSRHLRSTKLSDLVFRADGNVPSSRR-AVVKVVYMVGDGEVDGFEDGEEIHFSRVISVAGSSSYRLNDKEV 121
            MGR+I+IE E+FKSY G Q IGPFK+FTAVIGPNG+GKSNLMDAISFV+GVQ+R LR  +L DLV+ ADG     RR A V ++Y    GE+ G   G+E+ F R IS AGSS Y L  K V
Sbjct:    1 MGRIIRIEVEDFKSYKGFQTIGPFKNFTAVIGPNGAGKSNLMDAISFVVGVQTRQLRGEQLKDLVYNADGKREEERRQAKVCLIYQPAAGEIKGVAPGQELSFERTISFAGSSKYCLQHKTV 122          
BLAST of mRNA_H-elongata_contig55670.12992.1 vs. uniprot
Match: A0A482SNL3_9ARCH (Chromosome segregation protein SMC n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SNL3_9ARCH)

HSP 1 Score: 141 bits (355), Expect = 1.880e-36
Identity = 69/121 (57.02%), Postives = 90/121 (74.38%), Query Frame = 0
Query:    1 MGRLIKIEAENFKSYAGKQIIGPFKDFTAVIGPNGSGKSNLMDAISFVLGVQSRHLRSTKLSDLVFRADGNVPSSRRAVVKVVYMVGDGEVDGFEDGEEIHFSRVISVAGSSSYRLNDKEV 121
            MGRL+++E ENFKSYAG Q+IGPF DFT +IGPNG+GKSNLMDAISFVLG+QS+ LRST L DL+F  D N    RRA+V+++Y+V   E+DG+     I F+R ++  G S Y+  D+ V
Sbjct:    1 MGRLLQLELENFKSYAGTQVIGPFYDFTCIIGPNGAGKSNLMDAISFVLGLQSKQLRSTNLKDLIFHKD-NAAQPRRAIVRLLYVVSKDELDGYPADTTIAFARSVTSNGVSVYQFQDQNV 120          
BLAST of mRNA_H-elongata_contig55670.12992.1 vs. uniprot
Match: A0A2P2LWV7_RHIMU (Uncharacterized protein MANES_12G032800 n=1 Tax=Rhizophora mucronata TaxID=61149 RepID=A0A2P2LWV7_RHIMU)

HSP 1 Score: 133 bits (334), Expect = 5.340e-35
Identity = 68/123 (55.28%), Postives = 88/123 (71.54%), Query Frame = 0
Query:    2 GRLIKIEAENFKSYAGKQIIGPFKDFTAVIGPNGSGKSNLMDAISFVLGVQSRHLRSTKLSDLVFRADGNVPSS--RRAVVKVVYMVGDGEVDGFEDGEEIHFSRVISVAGSSSYRLNDKEVH 122
            G+++K+E ENFKSY G Q IGPFKDFTA+IGPNG+GKSNLMDAISFVLGV++ HLR  +L DL++  D        RRA V++VY +G+G         EIHF+R I+ AG S YR++ K V+
Sbjct:    8 GKIVKLEMENFKSYKGMQTIGPFKDFTAIIGPNGAGKSNLMDAISFVLGVRTGHLRGGQLKDLIYAYDDREKEQKGRRAFVRLVYQLGNGS--------EIHFTRTITSAGGSEYRIDGKIVN 122          
BLAST of mRNA_H-elongata_contig55670.12992.1 vs. uniprot
Match: A0A6A3J9J0_9STRA (Structural maintenance of chromosomes protein n=6 Tax=Phytophthora TaxID=4783 RepID=A0A6A3J9J0_9STRA)

HSP 1 Score: 135 bits (341), Expect = 1.460e-34
Identity = 70/133 (52.63%), Postives = 94/133 (70.68%), Query Frame = 0
Query:    1 MGRLIKIEAENFKSYAGKQIIGPFKDFTAVIGPNGSGKSNLMDAISFVLGVQSRHLRSTKLSDLVFRA--DGNVPSSRRAVVKVVYMVGDGE----------VDGFEDGEEIHFSRVISVAGSSSYRLNDKEV 121
            MGR+ ++E ENFKSY G  ++GPF+ FTAV+GPNGSGKSNLMDAISFVLGV SRHLRST+L DL+ +A  DG+  ++R AVV +VY + DGE                 +E+ F+R+IS  G+ SYR++ ++V
Sbjct:    1 MGRIARLELENFKSYGGAHVVGPFQRFTAVVGPNGSGKSNLMDAISFVLGVHSRHLRSTQLKDLIHKAPTDGDTTNARAAVVTLVYELADGERAPSASRAAQXXXXXXHKEVQFTRLISHKGAGSYRVDGRDV 133          
BLAST of mRNA_H-elongata_contig55670.12992.1 vs. uniprot
Match: A0A2R5GJT3_9STRA (Structural maintenance of chromosomes protein n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GJT3_9STRA)

HSP 1 Score: 135 bits (341), Expect = 1.470e-34
Identity = 64/122 (52.46%), Postives = 91/122 (74.59%), Query Frame = 0
Query:    1 MGRLIKIEAENFKSYAGKQIIGPFKDFTAVIGPNGSGKSNLMDAISFVLGVQSRHLRSTKLSDLVFRADGNVPSSRR-AVVKVVYMVGDGEVDGFEDGEEIHFSRVISVAGSSSYRLNDKEV 121
            MGR++++E ++FK+Y G Q +GPFK FTA++GPNG GKSNLMDAISFV+GVQ++HLR  +L DLV+ ADG    +RR A+V+++Y    GE++G + GEEI F+R I+  G+  Y L  + V
Sbjct:    1 MGRIVRVELKDFKTYRGAQTVGPFKPFTAIMGPNGGGKSNLMDAISFVVGVQTKHLRGEQLRDLVYNADGMREKTRREALVRLIYEPAAGELEGVKAGEEIEFTRTINANGTCKYMLQGRTV 122          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig55670.12992.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LRP2_ECTSI2.360e-5986.89Structural maintenance of chromosomes protein n=1 ... [more]
A0A835ZAW7_9STRA1.360e-5070.37Structural maintenance of chromosomes protein n=1 ... [more]
A0A812R846_9DINO1.670e-4062.81Smc1a protein n=1 Tax=Symbiodinium sp. KB8 TaxID=2... [more]
A0A4D9CMM9_9STRA5.240e-3961.60Structural maintenance of chromosomes protein n=1 ... [more]
A0A2D4CAS2_PYTIN1.010e-3658.68Structural maintenance of chromosomes protein, put... [more]
A0A7S2SMC1_9STRA1.400e-3660.66Structural maintenance of chromosomes protein n=1 ... [more]
A0A482SNL3_9ARCH1.880e-3657.02Chromosome segregation protein SMC n=1 Tax=archaeo... [more]
A0A2P2LWV7_RHIMU5.340e-3555.28Uncharacterized protein MANES_12G032800 n=1 Tax=Rh... [more]
A0A6A3J9J0_9STRA1.460e-3452.63Structural maintenance of chromosomes protein n=6 ... [more]
A0A2R5GJT3_9STRA1.470e-3452.46Structural maintenance of chromosomes protein n=1 ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003395RecF/RecN/SMC, N-terminalPFAMPF02463SMC_Ncoord: 4..122
e-value: 2.9E-32
score: 111.9
NoneNo IPR availableGENE3D3.40.50.300coord: 1..123
e-value: 4.4E-31
score: 110.8
NoneNo IPR availablePANTHERPTHR18937STRUCTURAL MAINTENANCE OF CHROMOSOMES SMC FAMILY MEMBERcoord: 1..122
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 3..122

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig55670contigH-elongata_contig55670:2090..3784 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig55670.12992.1mRNA_H-elongata_contig55670.12992.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig55670 2090..3784 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig55670.12992.1 ID=prot_H-elongata_contig55670.12992.1|Name=mRNA_H-elongata_contig55670.12992.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=124bp
MGRLIKIEAENFKSYAGKQIIGPFKDFTAVIGPNGSGKSNLMDAISFVLG
VQSRHLRSTKLSDLVFRADGNVPSSRRAVVKVVYMVGDGEVDGFEDGEEI
HFSRVISVAGSSSYRLNDKEVHT*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003395RecF/RecN/SMC_N
IPR027417P-loop_NTPase