mRNA_H-elongata_contig55664.12991.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig55664.12991.1
Unique NamemRNA_H-elongata_contig55664.12991.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig55664.12991.1 vs. uniprot
Match: D8LE14_ECTSI (TPR Domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LE14_ECTSI)

HSP 1 Score: 199 bits (507), Expect = 4.700e-59
Identity = 104/152 (68.42%), Postives = 116/152 (76.32%), Query Frame = 1
Query:    1 MSDYHILAFSSKRSGRHKMEGLAHYSAGVTMDGIGQYRKALENYGKFLAVCKNSSDPQVEGVCHNCMGVDCMLMACPPGSNMQANAT----RNTWLQRLAPSISKPGLSKVADDADAWIAHSNIGLCHGMMSDYIISASHHQEALKAALRVQ 444
            MSDYH+LAFSS+RSGRH+MEGLA+YSAGVTMD +GQY KALENY KFLAVCK   DP +EGVCHNCMGVD ML ACPP SNMQ N T    R   L R A    +  L K ADDA + +AHSNIGLCHG+M DY  +A HHQEAL+ ALRVQ
Sbjct:  193 MSDYHMLAFSSQRSGRHEMEGLAYYSAGVTMDSMGQYPKALENYKKFLAVCKTLKDPFIEGVCHNCMGVDYMLTACPPASNMQENTTGLPARAVALLRKALEHHEEHL-KGADDAGSGVAHSNIGLCHGLMGDYPRAAKHHQEALRVALRVQ 343          
BLAST of mRNA_H-elongata_contig55664.12991.1 vs. uniprot
Match: A0A6H5LCZ2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LCZ2_9PHAE)

HSP 1 Score: 189 bits (481), Expect = 4.130e-55
Identity = 99/160 (61.88%), Postives = 115/160 (71.88%), Query Frame = 1
Query:    1 MSDYHILAFSSKRSGRHKMEGLAHYSAGVTMDGIGQYRKALENYGKFLAVCKNSSDPQVEGVCHNCMGVDCMLMACPPGSNMQA------NATRNTWLQRLAPSISKPGLS------KVADDADAWIAHSNIGLCHGMMSDYIISASHHQEALKAALRVQ 444
            MSDY++LAFSS+RSGRH+MEGLA+YSAGVTMD +GQY KA+ENY KFLAVCK   D  +EGVCHNCMGVD MLMACPP SNMQ            T L   A ++ +  L       K ADDA + +AHSNIGLCHG+M DY  +A HHQEAL+ ALRVQ
Sbjct:  190 MSDYNMLAFSSQRSGRHEMEGLAYYSAGVTMDSMGQYPKAIENYKKFLAVCKTLKDLFIEGVCHNCMGVDYMLMACPPASNMQPALDVTKEKENTTGLPARAVALLRKALEHHEEHLKGADDAGSGVAHSNIGLCHGLMGDYPKAAKHHQEALRVALRVQ 349          
BLAST of mRNA_H-elongata_contig55664.12991.1 vs. uniprot
Match: A0A7S2C237_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2C237_9STRA)

HSP 1 Score: 145 bits (366), Expect = 8.620e-39
Identity = 70/154 (45.45%), Postives = 102/154 (66.23%), Query Frame = 1
Query:    1 MSDYHILAFSSKRSGRHKMEGLAHYSAGVTMDGIGQYRKALENYGKFLAVCKNSSDPQVEGVCHNCMGVDCMLMACPPGSNMQANATRNTWLQRLAPSISKPGLS------KVADDADAWIAHSNIGLCHGMMSDYIISASHHQEALKAALRVQ 444
            +SDY +LAFSS+R+G+ +MEG A+ +  +T+D + QY KA+E+YGKFL+VC+   DP +EG+ +NC+GVDCMLMACPP    Q    R    +  A    K  +        +ADD   ++AH+N+GLC G++ D   +A HHQEAL+ A+R+Q
Sbjct:  157 VSDYSMLAFSSQRAGKTQMEGQAYLAIAITLDNMQQYTKAIESYGKFLSVCEKMGDPVIEGLAYNCLGVDCMLMACPPSEGSQFEGVRTVTPESQA--TLKRAIRYHQRHLDIADDGGQFVAHTNLGLCLGLLGDNQPAAQHHQEALRVAIRLQ 308          
BLAST of mRNA_H-elongata_contig55664.12991.1 vs. uniprot
Match: A0A836C9X6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9X6_9STRA)

HSP 1 Score: 117 bits (292), Expect = 1.560e-28
Identity = 67/154 (43.51%), Postives = 88/154 (57.14%), Query Frame = 1
Query:    1 MSDYHILAFSSKRSGRHKMEGLAHYSAGVTMDGIGQYRKALENYGKFLAVCKNSSDPQVEGVCHNCMGVDCMLMACPPGSNMQA---NATRNTWLQRLAPSISKPGLSKVADDADAWIAHSNIGLCHGMMSDYIISASHHQEALKAALRVQVRA 453
            +SDY +LA SS+R+GR +MEGLA++  GV  D +GQY KALE Y K+L VC+ + D Q E + HNCMGVDC  +ACPPG+N  A    A     L R A   S      +ADD  A +A +N+GL   +             AL+AA R +  A
Sbjct:   94 ISDYTVLASSSQRAGRPQMEGLAYFCIGVLYDNMGQYGKALEAYKKYLGVCRRTDDKQGEALAHNCMGVDCHYLACPPGANAAALVLMAAARAALARAAEHHSAH--LALADDGGACVARTNLGLAAALAGXXXXXXXXXXAALRAAARARAPA 245          
BLAST of mRNA_H-elongata_contig55664.12991.1 vs. uniprot
Match: J9JA71_9SPIT (TPR Domain containing protein n=1 Tax=Oxytricha trifallax TaxID=1172189 RepID=J9JA71_9SPIT)

HSP 1 Score: 91.7 bits (226), Expect = 8.500e-19
Identity = 50/153 (32.68%), Postives = 85/153 (55.56%), Query Frame = 1
Query:    1 MSDYHILAFSSKRSGRHKMEGLAHYSAGVTMDGIGQYRKALENYGKFLAVCKNSSDPQVEGVCHNCMGVDCMLMACPPGSNMQANATRNTWLQRLAPSISKPGLS------KVADDADAWIAHSNIGLCHGMMSDYIISASHHQEALKAALRV 441
            + DY+ILAF+ KR+G+ + EG A+YS GV  D +G+Y++A++ Y +FL VCK   D   E + +NC+GVD M +                      P + K  +       ++AD A  ++AH N+GL +  + D+  ++ +HQ AL+ A+++
Sbjct:  138 LKDYNILAFACKRAGKSRDEGRAYYSTGVLFDNLGKYKQAIDQYKRFLQVCKAIGDAHGEALSYNCIGVDYMKLG------------------ESEPQLYKDAIEYHTKHKEIADVAGKFLAHINLGLIYNNIGDHEKASINHQFALRYAIQM 272          
BLAST of mRNA_H-elongata_contig55664.12991.1 vs. uniprot
Match: A0A7S1AIM4_NOCSC (Hypothetical protein n=1 Tax=Noctiluca scintillans TaxID=2966 RepID=A0A7S1AIM4_NOCSC)

HSP 1 Score: 88.2 bits (217), Expect = 1.600e-17
Identity = 51/158 (32.28%), Postives = 86/158 (54.43%), Query Frame = 1
Query:    1 MSDYHILAFSSKRSGRHKMEGLAHYSAGVTMDGIGQYRKALENYGKFLAVCKNSSDPQVEGVCHNCMGVDCMLMACPPGSNMQANATRNTWLQRL----APSISKPGLS------KVADDADAWIAHSNIGLCHGMMSDYIISASHHQEALKAALRVQ 444
            + D  +L F+  R+G+ + EG A ++ G+  D IGQYRK +E Y KFL VCK+  D Q   + ++C+ VD  L+    G    A++  N+ L+       P++ K  +S      + AD    ++AH N+GL +  + +   +  +HQ AL+ ALR++
Sbjct:  168 IQDLDLLTFACHRAGKFREEGRAFFTLGLLRDNIGQYRKGIEAYNKFLRVCKDCDDSQGCALANHCIAVDYQLLG---GGGAVASSEANSGLEEAQSATVPALLKKSISFHSKHRESADGVGKFVAHLNLGLAYASLGERESATVNHQYALRYALRLR 322          
BLAST of mRNA_H-elongata_contig55664.12991.1 vs. uniprot
Match: A0A8J8NP76_HALGN (Uncharacterized protein n=1 Tax=Halteria grandinella TaxID=5974 RepID=A0A8J8NP76_HALGN)

HSP 1 Score: 77.4 bits (189), Expect = 1.040e-13
Identity = 35/74 (47.30%), Postives = 51/74 (68.92%), Query Frame = 1
Query:    1 MSDYHILAFSSKRSGRHKMEGLAHYSAGVTMDGIGQYRKALENYGKFLAVCKNSSDPQVEGVCHNCMGVDCMLM 222
            + DY+ILAF+ KR+G+ + EG A+YS GV  D +G+Y+ A+E Y +FL VCK   D   E + +NC+GVD M +
Sbjct:  137 LKDYNILAFACKRAGKSRDEGRAYYSTGVLYDNLGKYKAAIEQYKRFLQVCKAIGDVHGEALSYNCIGVDYMKL 210          
BLAST of mRNA_H-elongata_contig55664.12991.1 vs. uniprot
Match: A0A078AHX3_STYLE (Uncharacterized protein n=1 Tax=Stylonychia lemnae TaxID=5949 RepID=A0A078AHX3_STYLE)

HSP 1 Score: 77.0 bits (188), Expect = 1.400e-13
Identity = 34/74 (45.95%), Postives = 52/74 (70.27%), Query Frame = 1
Query:    1 MSDYHILAFSSKRSGRHKMEGLAHYSAGVTMDGIGQYRKALENYGKFLAVCKNSSDPQVEGVCHNCMGVDCMLM 222
            + DY+ILAF+ KR+G+ + EG A+YS GV  D +G+Y++A++ Y +FL VCK   D   E + +NC+GVD M +
Sbjct:  134 LKDYNILAFACKRAGKSRDEGRAYYSTGVLYDNLGKYKQAIDQYKRFLQVCKAIGDVHGEALSYNCIGVDYMKL 207          
BLAST of mRNA_H-elongata_contig55664.12991.1 vs. uniprot
Match: A0A7S2UWM0_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UWM0_9STRA)

HSP 1 Score: 53.5 bits (127), Expect = 2.270e-5
Identity = 19/42 (45.24%), Postives = 34/42 (80.95%), Query Frame = 1
Query:  319 VADDADAWIAHSNIGLCHGMMSDYIISASHHQEALKAALRVQ 444
            + DD    +AH+N+GLC+G+++ + ++A+HHQEAL+ AL++Q
Sbjct:  328 ITDDGGKCVAHTNMGLCYGLLNKFPVAATHHQEALRMALKIQ 369          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig55664.12991.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
D8LE14_ECTSI4.700e-5968.42TPR Domain containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5LCZ2_9PHAE4.130e-5561.88Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2C237_9STRA8.620e-3945.45Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A836C9X6_9STRA1.560e-2843.51Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
J9JA71_9SPIT8.500e-1932.68TPR Domain containing protein n=1 Tax=Oxytricha tr... [more]
A0A7S1AIM4_NOCSC1.600e-1732.28Hypothetical protein n=1 Tax=Noctiluca scintillans... [more]
A0A8J8NP76_HALGN1.040e-1347.30Uncharacterized protein n=1 Tax=Halteria grandinel... [more]
A0A078AHX3_STYLE1.400e-1345.95Uncharacterized protein n=1 Tax=Stylonychia lemnae... [more]
A0A7S2UWM0_9STRA2.270e-545.24Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig55664contigH-elongata_contig55664:137..1596 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score200.3
Seed ortholog evalue6.7e-49
Seed eggNOG ortholog2880.D8LE14
EggNOG OGs29K8A@1,2RTH8@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons3
Model size468
Cds size468
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig55664.12991.1prot_H-elongata_contig55664.12991.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig55664 137..1596 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930907.483073-CDS-H-elongata_contig55664:136..3171622930907.483073-CDS-H-elongata_contig55664:136..317Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55664 137..317 -
1691679619.856357-CDS-H-elongata_contig55664:136..3171691679619.856357-CDS-H-elongata_contig55664:136..317Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55664 137..317 -
1622930907.5025218-CDS-H-elongata_contig55664:1097..12291622930907.5025218-CDS-H-elongata_contig55664:1097..1229Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55664 1098..1229 -
1691679619.8695514-CDS-H-elongata_contig55664:1097..12291691679619.8695514-CDS-H-elongata_contig55664:1097..1229Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55664 1098..1229 -
1622930907.519705-CDS-H-elongata_contig55664:1441..15961622930907.519705-CDS-H-elongata_contig55664:1441..1596Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55664 1442..1596 -
1691679619.8775475-CDS-H-elongata_contig55664:1441..15961691679619.8775475-CDS-H-elongata_contig55664:1441..1596Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55664 1442..1596 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig55664.12991.1

>prot_H-elongata_contig55664.12991.1 ID=prot_H-elongata_contig55664.12991.1|Name=mRNA_H-elongata_contig55664.12991.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=156bp
MSDYHILAFSSKRSGRHKMEGLAHYSAGVTMDGIGQYRKALENYGKFLAV
CKNSSDPQVEGVCHNCMGVDCMLMACPPGSNMQANATRNTWLQRLAPSIS
KPGLSKVADDADAWIAHSNIGLCHGMMSDYIISASHHQEALKAALRVQVR
ACTLK*
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mRNA from alignment at H-elongata_contig55664:137..1596-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig55664.12991.1 ID=mRNA_H-elongata_contig55664.12991.1|Name=mRNA_H-elongata_contig55664.12991.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1460bp|location=Sequence derived from alignment at H-elongata_contig55664:137..1596- (Himanthalia elongata Himel1 dioecious)
ATGAGCGACTATCACATTCTGGCTTTCTCGAGCAAAAGATCAGGGAGGCA CAAGATGGAGGGACTAGCTCACTACTCCGCCGGCGTGACCATGGACGGCA TCGGTCAATACAGAAAAGCGCTGGAGAACTACGGGAAGTTTCTCGCCGTT TGCAAGTGAGGGAGAGAACGGTTGGGCGGAAAAAGCTAAGAGTGAAAACA ATCAAGCGCTTTTTTGCTTTTTTTTTTGAGGCAGAGGCTTTTGCTTCTTG CGCGCGCGCTCGTTTGTTGTTGTTGCTGTTGCTGCTTTCATCCCGTAAAT CCTCCCCACGAATCCCGTTGTATCCCTGGGCGCTTTAAAACAACCCCGTC TTGGTGCTACGCGGCAGAAACTCAAGCGATCCTCAGGTCGAAGGTGTCTG CCACAACTGCATGGGTGTCGACTGCATGCTGATGGCATGTCCGCCTGGAT CAAACATGCAGGCAAATGCTACGAGAAATACTTGGCTGCAGAGACTGGCG TCGGTTAGCGTCAACTAGCGTCTCGATAGTGGACCCGCTTCCAGCTCCTG TATATATATATATAATATATATAAACATATATTTCACTGCATAATGTGTT GTATTGCTTCACGAGGGTCGGACGTGGGATTGGTTGTCAGGTTGAACATG TTTTGTCGATTCATTTTGAATCAAGAGGGGTTACCCCCCGGCTAAACGAT ATAAGCTGGACGGGGTGCTTTCACTCTTACGTACCTACCTACCTACGTAC CTACCTACCTACCTACAGTCGGCTCTTAACGTGCAGAGAGAGAGAGGGAG AGGGAGAGTGATTCCCCGTACATTCTTAGTACATCCGGCCGCAGCGCTCC ATCTAGCATACTCTGACGACAGCAAAGCGAAGGTTTCACTCGTAGTATCG CTGATATTCGGGAATCCGTGCGCGGTCACTCACTGCCGCAGGATAAGGTC GGAGGGCTGCCGGCGAGATCGGTGACAGCGTTGAAGAAGGCGTTGGAGCA TCACGACGCACACCTCAAGGCAAGCGCCGAACATGCCGAACGGGATCTAA AACTAACGCTGGCCTACCCACCAGCGGGCACCTCCCTCTTTCCCTCCTTC CATCTCCCAGCTTCCCCGTCGCCTCATTCGTACTTCTGTTTATTTAACAA TATGAATCATAGTCGTTTCGTAAGCGGATGTACACGTCTTTCTGACATGG TGTAGCCCTGGACGCGTCTGAGGCCTGAAAAAATATATGTCGATTTTAAA GAGCGGTCACCGCTACTGAGGCTCTGAAGTCCATCGATCTCGAAACCTGG CTTATCAAAGGTGGCGGATGACGCAGACGCCTGGATTGCACACTCCAACA TTGGGCTTTGCCACGGGATGATGAGTGACTACATCATATCAGCCAGTCAC CATCAAGAGGCGCTAAAAGCCGCTCTTCGGGTACAGGTGCGCGCGTGTAC CCTAAAGTAG
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Coding sequence (CDS) from alignment at H-elongata_contig55664:137..1596-

>mRNA_H-elongata_contig55664.12991.1 ID=mRNA_H-elongata_contig55664.12991.1|Name=mRNA_H-elongata_contig55664.12991.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=936bp|location=Sequence derived from alignment at H-elongata_contig55664:137..1596- (Himanthalia elongata Himel1 dioecious)
ATGAGCGACTATCACATTCTGGCTTTCTCGAGCAAAAGATCAGGGAGGCA
CAAGATGGAGGGACTAGCTCACTACTCCGCCGGCGTGACCATGGACGGCA
TCGGTCAATACAGAAAAGCGCTGGAGAACTACGGGAAGTTTCTCGCCGTT
TGCAAATGAGCGACTATCACATTCTGGCTTTCTCGAGCAAAAGATCAGGG
AGGCACAAGATGGAGGGACTAGCTCACTACTCCGCCGGCGTGACCATGGA
CGGCATCGGTCAATACAGAAAAGCGCTGGAGAACTACGGGAAGTTTCTCG
CCGTTTGCAAAAACTCAAGCGATCCTCAGGTCGAAGGTGTCTGCCACAAC
TGCATGGGTGTCGACTGCATGCTGATGGCATGTCCGCCTGGATCAAACAT
GCAGGCAAATGCTACGAGAAATACTTGGCTGCAGAGACTGGCAAACTCAA
GCGATCCTCAGGTCGAAGGTGTCTGCCACAACTGCATGGGTGTCGACTGC
ATGCTGATGGCATGTCCGCCTGGATCAAACATGCAGGCAAATGCTACGAG
AAATACTTGGCTGCAGAGACTGGCTCCATCGATCTCGAAACCTGGCTTAT
CAAAGGTGGCGGATGACGCAGACGCCTGGATTGCACACTCCAACATTGGG
CTTTGCCACGGGATGATGAGTGACTACATCATATCAGCCAGTCACCATCA
AGAGGCGCTAAAAGCCGCTCTTCGGGTACAGGTGCGCGCGTGTACCCTAA
AGTAGTCCATCGATCTCGAAACCTGGCTTATCAAAGGTGGCGGATGACGC
AGACGCCTGGATTGCACACTCCAACATTGGGCTTTGCCACGGGATGATGA
GTGACTACATCATATCAGCCAGTCACCATCAAGAGGCGCTAAAAGCCGCT
CTTCGGGTACAGGTGCGCGCGTGTACCCTAAAGTAG
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