mRNA_H-elongata_contig55611.12985.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig55611.12985.1
Unique NamemRNA_H-elongata_contig55611.12985.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig55611.12985.1 vs. uniprot
Match: D7FR29_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR29_ECTSI)

HSP 1 Score: 308 bits (789), Expect = 7.300e-102
Identity = 151/207 (72.95%), Postives = 171/207 (82.61%), Query Frame = 1 
Query:    1 QLRMALILPGFAHTGELRTSGRNPEKYFVTSPIEVAIQPFVETGFVSNGTWFNGSAREASTSRRANRITWTVPVPTAMGLDMSALPSPAKEREKGEGQMARHARQGFRRIAATNFNGLPQDPEAAEVRAKLISSLANDGVTPNKGKDGRVRSGILMHNSVGCFNKGGQLSMSILYYRPKYIGIGNEVFVELDDEEAVTEAFFCGEEG 621
            ++R ALILPGF H GE++TSGR P++Y+VT P+EVAIQPF+ TG   NGTWFNG+ REAS SRRANRITWTVPVPTAMGLD + LP P  ERE+GE Q +RH RQG RRIA TNFNG+PQDPEAAEVRAKL+  LA DGV P KG DGRVRSGILM+NSV CF K G+L+MSILY+RPKYIGIGNEVFVELD EEAVTE    G+ G
Sbjct:  163 EIRKALILPGFCHDGEIKTSGRKPDEYYVTGPLEVAIQPFIATGNFPNGTWFNGTTREASQSRRANRITWTVPVPTAMGLDPTKLPEPPSERERGEDQRSRHVRQGARRIAVTNFNGIPQDPEAAEVRAKLLKRLAADGVEPAKGADGRVRSGILMYNSVACFTKAGKLAMSILYHRPKYIGIGNEVFVELDPEEAVTEEVVEGKVG 369
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BLAST of mRNA_H-elongata_contig55611.12985.1 vs. uniprot
Match: A0A6H5L2A9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2A9_9PHAE)

HSP 1 Score: 311 bits (796), Expect = 1.110e-100
Identity = 151/207 (72.95%), Postives = 172/207 (83.09%), Query Frame = 1 
Query:    1 QLRMALILPGFAHTGELRTSGRNPEKYFVTSPIEVAIQPFVETGFVSNGTWFNGSAREASTSRRANRITWTVPVPTAMGLDMSALPSPAKEREKGEGQMARHARQGFRRIAATNFNGLPQDPEAAEVRAKLISSLANDGVTPNKGKDGRVRSGILMHNSVGCFNKGGQLSMSILYYRPKYIGIGNEVFVELDDEEAVTEAFFCGEEG 621
            ++R ALILPGF H GE++TSGR P++Y+VT P+EVAIQPF+ TG   NGTWFNG+ REAS SRRANRITWTVP+PTAMGLD + LP P  ERE+GE Q +RH RQG RRIA TNFNG+PQDPEAAEVRAKL+  LA DGV P+KG DGRVRSGILMHNSV CF K G+L+MSILY+RPKYIGIGNEVFVELD EEAVTE    G+ G
Sbjct:  336 EIRKALILPGFCHDGEIKTSGRKPDEYYVTGPLEVAIQPFIATGNFPNGTWFNGTRREASQSRRANRITWTVPIPTAMGLDPTKLPEPPSERERGEDQRSRHVRQGARRIAVTNFNGIPQDPEAAEVRAKLLKRLAADGVEPSKGADGRVRSGILMHNSVACFTKAGKLAMSILYHRPKYIGIGNEVFVELDPEEAVTEEVVEGKVG 542
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BLAST of mRNA_H-elongata_contig55611.12985.1 vs. uniprot
Match: A0A835YSS2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSS2_9STRA)

HSP 1 Score: 153 bits (386), Expect = 3.930e-41
Identity = 87/194 (44.85%), Postives = 114/194 (58.76%), Query Frame = 1 
Query:    1 QLRMALILPGFAHTGELRTSGRNPEKYFVTSPIEVAIQPFVETGFVSNGTWFNGSAREASTSRRANRITWTVPVPTAMGLDMSALPSPAKEREKG-EGQMARHARQGFRRIAATNFNGLPQDPEAAEVRAKLISSLANDGVTPNKGKDGRVRSGILMHNSVGCFNKGGQLSMSILYYRPKYIGIGNEVFVELDD 579
            Q RMA +LP F+ T  + T GR PEKYF TSPIE  I P +ET  VSN    NGS     T  RANRITW V VP + GL+  A+P P  E      G      RQ  R +A  N+NG  QD EA E+RAKL+  L+ D      G +GR ++G +  +    FNK G++S+++  YRPK +G GN+V+VEL++
Sbjct:  204 QARMAYVLPDFSFTSSVNTRGRVPEKYFTTSPIEAEITPLIETNTVSNE---NGSLGSVQT--RANRITWAVQVPASFGLEAGAMPDPRGEGYNPLNGDAIEFERQDRRVVAVANYNGSVQDKEAVELRAKLLEQLSMDKAKVALGPEGRPKAGFMSFDGKVGFNKQGRVSIAVYEYRPKILGKGNKVYVELEE 392
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BLAST of mRNA_H-elongata_contig55611.12985.1 vs. uniprot
Match: A0A6V1P7S5_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1P7S5_HETAK)

HSP 1 Score: 80.5 bits (197), Expect = 4.590e-14
Identity = 60/194 (30.93%), Postives = 91/194 (46.91%), Query Frame = 1 
Query:    1 QLRMALILPGFAHTGELRTSGRNPEKYFVTSPIEVAIQPFVETGFVSNGTWFNGSA-REASTSRRANRITWTVPVPTAMGLDMSALPSPAKEREKGEGQMAR--HARQGFRRIAATNFNGLPQDPEAAEVRAKLISSLANDGVTPNKGKDGRVRSGILMHNSVGCFNKGGQLSMSILYYRPKYIGIGNEVFVEL 573
            + R A  LP    +  +   G+ PE+++VTSPIEV+               F G   +E    ++ N I W V +P A GL++  LP P       E Q  R  H   G RR+A   FNG  QD   ++ RA+L++    DG     G  GR +   L +++   F + G L ++   Y P++   GNE+ +EL
Sbjct:  248 ETRAARTLPESMFSCTISMIGKIPERFYVTSPIEVS---------------FRGKMLKEGDAQKKVNAIQWKVGLPKAFGLELGGLPDPDGRETAQEMQDDRVWHQVDGPRRVAVARFNGQNQDVGVSKARAELLAKAQEDGHELLLGNSGRPQFSFLQNDAKVGFKRTGGLGVA--GYEPRW-DTGNEIALEL 423
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BLAST of mRNA_H-elongata_contig55611.12985.1 vs. uniprot
Match: A0A7S2BLZ7_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BLZ7_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 1.660e-11
Identity = 62/193 (32.12%), Postives = 90/193 (46.63%), Query Frame = 1 
Query:    1 QLRMALILPGFAHTGELRTSGRN-PEKYFVTSPIEVAIQPFVETGFVSNGTWFNGSAREASTSRRANRITWTVPVPTAMGLDMSALPS--PAKEREKGE--GQMARHARQGF-----RRIAATNFN-GLPQDPEAAEVRAKLISSLANDGVTPNKGKDGRVRSGILMHNSVG-CFNKGGQLSMSILYYRPKYI 543
            ++     LP FA TG ++  G+   E    TSP+ V+I+         +   F+G        ++  + TWT+PVP+  GLDM+ LP   P  ERE+GE  G  A  A   F     RRIA   F  G     EA++VR KL+++L  DG               L  N+V  C+ +GG   M++   RP Y+
Sbjct:  281 EMNQGFFLPNFAFTGPIKQRGKFIAEDLVATSPLSVSIEAV-------DSAVFDG--------KKIKQATWTIPVPSEHGLDMTNLPPVPPLDEREEGELIGPCAPTAYAAFELVPARRIAVVPFGMGDTVSQEASDVRRKLLNALERDGRRFRLSASSNKPLFTLHENTVKLCWTRGGAHGMAVYSPRPSYL 458
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BLAST of mRNA_H-elongata_contig55611.12985.1 vs. uniprot
Match: A0A8J2SS52_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SS52_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 4.250e-5
Identity = 38/140 (27.14%), Postives = 70/140 (50.00%), Query Frame = 1 
Query:  190 RANRITWTVPVPTAMGLDMSALPSPAKEREKGEGQMA---------RHARQGFRRIAATNFNGLPQDPEAAEVRAKLISSLANDGVTPNKGKDGRVRSGILM--HNSVGCFNKGGQLSMSILYYRPKYIGI-GNEVFVEL 573
            R  R+TW +P+PTA+GLD ++LP   ++ E  +G +           +A Q  +     +++G PQD  AA +R  L  +    G++   G +G     +L      +G ++  G L+ ++    P ++ + GNE+ VE+
Sbjct:  294 RKRRVTWALPLPTALGLDFASLPELPRKAELNDGGLELGVAENPSLTYALQPAKLYVCASYSGDPQDAAAAPLRKALAEAAVAQGLSLVPGANGGAAPAVLRKWRAKLG-YSDVGALAYAMESNAPSWVSVDGNELCVEV 432
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig55611.12985.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D7FR29_ECTSI7.300e-10272.95Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L2A9_9PHAE1.110e-10072.95Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YSS2_9STRA3.930e-4144.85Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6V1P7S5_HETAK4.590e-1430.93Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2BLZ7_9STRA1.660e-1132.12Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A8J2SS52_9STRA4.250e-527.14Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig55611contigH-elongata_contig55611:2390..3689 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score307.8
Seed ortholog evalue4.1e-81
Seed eggNOG ortholog2880.D7FR29
EggNOG OGs2C5V8@1,2SB4P@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-09_003730.1
Exons3
Model size651
Cds size642
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig55611.12985.1prot_H-elongata_contig55611.12985.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig55611 2390..3680 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930906.6469643-CDS-H-elongata_contig55611:2389..26801622930906.6469643-CDS-H-elongata_contig55611:2389..2680Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55611 2390..2680 -
1691679619.5688803-CDS-H-elongata_contig55611:2389..26801691679619.5688803-CDS-H-elongata_contig55611:2389..2680Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55611 2390..2680 -
1622930906.670055-CDS-H-elongata_contig55611:3002..31921622930906.670055-CDS-H-elongata_contig55611:3002..3192Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55611 3003..3192 -
1691679619.5849853-CDS-H-elongata_contig55611:3002..31921691679619.5849853-CDS-H-elongata_contig55611:3002..3192Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55611 3003..3192 -
1622930906.6922822-CDS-H-elongata_contig55611:3519..36801622930906.6922822-CDS-H-elongata_contig55611:3519..3680Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55611 3520..3680 -
1691679619.5993958-CDS-H-elongata_contig55611:3519..36801691679619.5993958-CDS-H-elongata_contig55611:3519..3680Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55611 3520..3680 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930906.7160497-UTR-H-elongata_contig55611:3680..36891622930906.7160497-UTR-H-elongata_contig55611:3680..3689Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig55611 3681..3689 -
1691679619.608013-UTR-H-elongata_contig55611:3680..36891691679619.608013-UTR-H-elongata_contig55611:3680..3689Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig55611 3681..3689 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig55611.12985.1

>prot_H-elongata_contig55611.12985.1 ID=prot_H-elongata_contig55611.12985.1|Name=mRNA_H-elongata_contig55611.12985.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=214bp
MALILPGFAHTGELRTSGRNPEKYFVTSPIEVAIQPFVETGFVSNGTWFN
GSAREASTSRRANRITWTVPVPTAMGLDMSALPSPAKEREKGEGQMARHA
RQGFRRIAATNFNGLPQDPEAAEVRAKLISSLANDGVTPNKGKDGRVRSG
ILMHNSVGCFNKGGQLSMSILYYRPKYIGIGNEVFVELDDEEAVTEAFFC
GEEGEEAQENAAV*
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mRNA from alignment at H-elongata_contig55611:2390..3689-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig55611.12985.1 ID=mRNA_H-elongata_contig55611.12985.1|Name=mRNA_H-elongata_contig55611.12985.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1300bp|location=Sequence derived from alignment at H-elongata_contig55611:2390..3689- (Himanthalia elongata Himel1 dioecious)
CAGCTCCGCATGGCTCTCATTCTTCCGGGCTTTGCCCACACGGGCGAGCT
GAGGACATCCGGCAGGAATCCGGAGAAGTACTTCGTGACCTCGCCTATCG
AGGTGGCGATCCAGCCCTTCGTCGAAACGGGCTTCGTCTCCAACGGGACG
TGGTTCAACGGTAGTGCGAGGTGATAAGCGGGTGCGCGCGCGTGATCATC
AGGAGGCACTTGGCCCTGCCGTGATTGAATCGATTACCTCAGGAGACTGC
CAGTCCGATCTCGCTGGAATTTCCATCAACTCAACTACGAACTCGACCTT
TCAACCTTCGTTTTCGGTCTTGGTTTATATTTTATTTCTCTATTTCTTTT
GAGAGTACTCTACCTCTCATGACACCTCACGGGCCGTAGCTCTTACAAGT
AACGCGCTGTGGATTTCTCGTTTACCCAGTGTTTCCTTTTCTTTTGTCGA
GAACCGCTTCTGAACTCGCCGAAGACCTTGAAATTCGCTCGCATCAGGGA
AGCCTCGACGAGTCGCCGGGCCAACCGCATCACTTGGACGGTGCCGGTGC
CGACAGCCATGGGCCTCGACATGTCCGCGCTGCCGTCCCCGGCCAAAGAG
CGCGAGAAAGGGGAGGGTCAGATGGCACGGCACGCTCGGCAGGGGTTCAG
GAGAATTGCCGCGACCAATTTCAATGGGCTACCACAGGTGTGCACTATTT
TATTTTATTCCCTCGCCTGGGAGGGGGCTGCTCTAGCGGGGGCATGGTCT
TCGCTGGGAGCGCAATCGTTGGAAAATATGGGTGGGGGGGGGTTCTTTGC
TCGGCACGACATGGTACGCAGTTTTTCTGCTTTCGGTTTCCCGTGATGTT
TCACATTTTAAATGCATCAGTGAACAAGGCAAATCCTACCTACGACGGTC
GCTCTTCGCCTCGTCAGCCTCCGGTAGATGGCCGACTGAATCGTGGCCTG
TGCGCCACGGCTCCCGCCCCAATACCCGTTACCATTTCCTGGTATTATGT
CATCGACAGGACCCAGAAGCGGCGGAGGTGAGGGCGAAGCTTATCTCAAG
TTTAGCGAACGACGGCGTGACTCCGAACAAGGGCAAGGATGGGCGCGTTC
GAAGCGGCATCCTCATGCATAACTCGGTGGGGTGCTTCAACAAGGGCGGG
CAGCTGTCGATGAGCATATTGTATTACAGACCAAAGTATATCGGGATCGG
AAACGAAGTATTCGTGGAGCTGGACGATGAAGAAGCGGTCACGGAGGCGT
TTTTCTGTGGGGAGGAGGGAGAAGAAGCGCAAGAGAATGCGGCGGTGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig55611:2390..3689-

>mRNA_H-elongata_contig55611.12985.1 ID=mRNA_H-elongata_contig55611.12985.1|Name=mRNA_H-elongata_contig55611.12985.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1284bp|location=Sequence derived from alignment at H-elongata_contig55611:2390..3689- (Himanthalia elongata Himel1 dioecious)
ATGGCTCTCATTCTTCCGGGCTTTGCCCACACGGGCGAGCTGAGGACATC
CGGCAGGAATCCGGAGAAGTACTTCGTGACCTCGCCTATCGAGGTGGCGA
TCCAGCCCTTCGTCGAAACGGGCTTCGTCTCCAACGGGACGTGGTTCAAC
GGTAGTGCGAGATGGCTCTCATTCTTCCGGGCTTTGCCCACACGGGCGAG
CTGAGGACATCCGGCAGGAATCCGGAGAAGTACTTCGTGACCTCGCCTAT
CGAGGTGGCGATCCAGCCCTTCGTCGAAACGGGCTTCGTCTCCAACGGGA
CGTGGTTCAACGGTAGTGCGAGGGAAGCCTCGACGAGTCGCCGGGCCAAC
CGCATCACTTGGACGGTGCCGGTGCCGACAGCCATGGGCCTCGACATGTC
CGCGCTGCCGTCCCCGGCCAAAGAGCGCGAGAAAGGGGAGGGTCAGATGG
CACGGCACGCTCGGCAGGGGTTCAGGAGAATTGCCGCGACCAATTTCAAT
GGGCTACCACAGGGAAGCCTCGACGAGTCGCCGGGCCAACCGCATCACTT
GGACGGTGCCGGTGCCGACAGCCATGGGCCTCGACATGTCCGCGCTGCCG
TCCCCGGCCAAAGAGCGCGAGAAAGGGGAGGGTCAGATGGCACGGCACGC
TCGGCAGGGGTTCAGGAGAATTGCCGCGACCAATTTCAATGGGCTACCAC
AGGACCCAGAAGCGGCGGAGGTGAGGGCGAAGCTTATCTCAAGTTTAGCG
AACGACGGCGTGACTCCGAACAAGGGCAAGGATGGGCGCGTTCGAAGCGG
CATCCTCATGCATAACTCGGTGGGGTGCTTCAACAAGGGCGGGCAGCTGT
CGATGAGCATATTGTATTACAGACCAAAGTATATCGGGATCGGAAACGAA
GTATTCGTGGAGCTGGACGATGAAGAAGCGGTCACGGAGGCGTTTTTCTG
TGGGGAGGAGGGAGAAGAAGCGCAAGAGAATGCGGCGGTGTGAGACCCAG
AAGCGGCGGAGGTGAGGGCGAAGCTTATCTCAAGTTTAGCGAACGACGGC
GTGACTCCGAACAAGGGCAAGGATGGGCGCGTTCGAAGCGGCATCCTCAT
GCATAACTCGGTGGGGTGCTTCAACAAGGGCGGGCAGCTGTCGATGAGCA
TATTGTATTACAGACCAAAGTATATCGGGATCGGAAACGAAGTATTCGTG
GAGCTGGACGATGAAGAAGCGGTCACGGAGGCGTTTTTCTGTGGGGAGGA
GGGAGAAGAAGCGCAAGAGAATGCGGCGGTGTGA
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