mRNA_H-elongata_contig556.12983.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig556.12983.1 vs. uniprot
Match: A0A151I9F2_9HYME (Copia protein n=1 Tax=Cyphomyrmex costatus TaxID=456900 RepID=A0A151I9F2_9HYME) HSP 1 Score: 66.6 bits (161), Expect = 1.620e-12 Identity = 36/82 (43.90%), Postives = 50/82 (60.98%), Query Frame = 1
Query: 4 WAEAMAYAYDIWNRCISSSLDSGTSPYELWYGRRPTLDNVPPFGTVGYLRRSKPGQN-LAPRGASCIMLGLAPDVPRDTFRV 246
WAEA+A A I NRCI++ L G +P+E W+GRRP ++++ FG ++ PG+ L PRG C LG D P +FRV
Sbjct: 16 WAEAVATANYIRNRCITNVL-KGKTPFEAWHGRRPNVEHLRIFGETAFMLDKTPGKGKLDPRGIKCTFLGY--DEPSRSFRV 94
BLAST of mRNA_H-elongata_contig556.12983.1 vs. uniprot
Match: A0A0J7N2J7_LASNI (Retrovirus-related pol polyprotein from transposon tnt 1-94 n=1 Tax=Lasius niger TaxID=67767 RepID=A0A0J7N2J7_LASNI) HSP 1 Score: 68.6 bits (166), Expect = 1.180e-11 Identity = 34/70 (48.57%), Postives = 44/70 (62.86%), Query Frame = 1
Query: 4 WAEAMAYAYDIWNRCISSSLDSGTSPYELWYGRRPTLDNVPPFGTVGYLRRSKPGQN-LAPRGASCIMLG 210
WAE +A A + NRCI+ +L T PYELWYG+RP + ++ FG V Y+ PG+ L PRG CI LG
Sbjct: 420 WAEGVATANFVRNRCITKTLTDKT-PYELWYGKRPNVKHIRIFGEVAYMLDKTPGKGKLEPRGIRCIFLG 488
BLAST of mRNA_H-elongata_contig556.12983.1 vs. uniprot
Match: Q9AYC5_ORYSJ (Putative retroelement pol polyprotein n=2 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=Q9AYC5_ORYSJ) HSP 1 Score: 55.5 bits (132), Expect = 4.840e-7 Identity = 27/70 (38.57%), Postives = 42/70 (60.00%), Query Frame = 1
Query: 4 WAEAMAYAYDIWNRCISSSLDSGTSPYELWYGRRPTLDNVPPFGTVGYLRRSKPG-QNLAPRGASCIMLG 210
W EA+ A + ++ SLD G +PYE WYGRRPT++++ F VGY++ +KP + L R + +G
Sbjct: 586 WGEAVVAAVYVLSKSPMKSLD-GVTPYEAWYGRRPTVEHLRVFECVGYVKTAKPNLRKLDDRSTRMVFIG 654
BLAST of mRNA_H-elongata_contig556.12983.1 vs. uniprot
Match: A0A0P4VIA9_9HEMI (Putative retrovirus-related pol polyprotein from transposon tnt (Fragment) n=1 Tax=Rhodnius neglectus TaxID=72488 RepID=A0A0P4VIA9_9HEMI) HSP 1 Score: 51.6 bits (122), Expect = 1.000e-6 Identity = 28/70 (40.00%), Postives = 39/70 (55.71%), Query Frame = 1
Query: 4 WAEAMAYAYDIWNRCISSSLDSGTSPYELWYGRRPTLDNVPPFGTVGYLRRSKPGQN-LAPRGASCIMLG 210
WAEA+A A I NRC SSSL+ G PY +WY + T+ FG GY P ++ P+ C+++G
Sbjct: 2 WAEAIATACYIRNRCPSSSLNGGI-PYTIWYEKPFTVSYFRSFGCKGYSLDKTPNKDKFQPKAKECVLVG 70
BLAST of mRNA_H-elongata_contig556.12983.1 vs. uniprot
Match: UPI00115E8C8E (hypothetical protein n=1 Tax=Klebsiella pneumoniae TaxID=573 RepID=UPI00115E8C8E) HSP 1 Score: 52.8 bits (125), Expect = 2.180e-6 Identity = 27/79 (34.18%), Postives = 43/79 (54.43%), Query Frame = 1
Query: 4 WAEAMAYAYDIWNRCISSSLDSGTSPYELWYGRRPTLDNVPPFGTVGYLRRSKPGQNLAPRGASCIMLGLAPDVPRDTF 240
W A+ A NR S S++ T+PYELWYG+RP L + +G Y+++ +P + L P+ C+ +G + TF
Sbjct: 12 WGYALETAAFTLNRAPSKSVE--TTPYELWYGKRPKLSFLKVWGCDAYVKKLQP-EKLEPKAEKCVFIGYPKETVGYTF 87
BLAST of mRNA_H-elongata_contig556.12983.1 vs. uniprot
Match: A0A0J7NGT3_LASNI (Retrovirus-related gag-pol polyprotein n=2 Tax=Lasius niger TaxID=67767 RepID=A0A0J7NGT3_LASNI) HSP 1 Score: 53.5 bits (127), Expect = 2.340e-6 Identity = 31/81 (38.27%), Postives = 47/81 (58.02%), Query Frame = 1
Query: 4 WAEAMAYAYDIWNRCISSSLDSGTSPYELWYGRRPTLDNVPPFGTVGYLRRSKPGQN-LAPRGASCIMLGLAPDVPRDTFR 243
WA+A+A A I NRC SSSL G +PYE W G P L+++ FG ++ + P ++ APR +++G PR++ R
Sbjct: 632 WADAVATACHIRNRCPSSSL-GGITPYEKWTGELPKLEHLRTFGAKVFVLDNNPAKDKFAPRSIEGVLIGY----PRESKR 707
BLAST of mRNA_H-elongata_contig556.12983.1 vs. uniprot
Match: UPI0012D47DD2 (hypothetical protein n=1 Tax=Levilactobacillus brevis TaxID=1580 RepID=UPI0012D47DD2) HSP 1 Score: 53.1 bits (126), Expect = 2.510e-6 Identity = 28/79 (35.44%), Postives = 43/79 (54.43%), Query Frame = 1
Query: 4 WAEAMAYAYDIWNRCISSSLDSGTSPYELWYGRRPTLDNVPPFGTVGYLRRSKPGQNLAPRGASCIMLGLAPDVPRDTF 240
W A+ A NR S S++ T+PYELWYG+RP L + +G Y+++ +P + L P+ CI +G + TF
Sbjct: 20 WGYALETAAFTLNRAPSKSVE--TTPYELWYGKRPKLSFLKVWGCDAYVKKLQP-EKLEPKAEKCIFIGYPKETVGYTF 95
BLAST of mRNA_H-elongata_contig556.12983.1 vs. uniprot
Match: UPI00136F9A8D (hypothetical protein n=1 Tax=Ligilactobacillus salivarius TaxID=1624 RepID=UPI00136F9A8D) HSP 1 Score: 52.8 bits (125), Expect = 4.170e-6 Identity = 27/79 (34.18%), Postives = 43/79 (54.43%), Query Frame = 1
Query: 4 WAEAMAYAYDIWNRCISSSLDSGTSPYELWYGRRPTLDNVPPFGTVGYLRRSKPGQNLAPRGASCIMLGLAPDVPRDTF 240
W A+ A NR S S++ T+PYELWYG+RP L + +G Y+++ +P + L P+ C+ +G + TF
Sbjct: 12 WGYALETAAFTLNRAPSKSVE--TTPYELWYGKRPKLSFLKVWGCDAYVKKLQP-EKLEPKAEKCVFIGYPKETVGYTF 87
BLAST of mRNA_H-elongata_contig556.12983.1 vs. uniprot
Match: A0A0J7K725_LASNI (Gag-pol polyprotein n=1 Tax=Lasius niger TaxID=67767 RepID=A0A0J7K725_LASNI) HSP 1 Score: 51.6 bits (122), Expect = 1.110e-5 Identity = 28/75 (37.33%), Postives = 44/75 (58.67%), Query Frame = 1
Query: 1 LWAEAMAYAYDIWNRCISSSLDSGTSPYELWYGRRPTLDNVPPFGTVGYLRRSKPGQN-LAPRGASCIMLGLAPD 222
LWAEA+ A + NR ++ + + T P+E+W+GR+PTLD + FG+ Y+ K L P+G I++G D
Sbjct: 445 LWAEAINTAVYVLNRTPTTQVLNST-PFEIWHGRKPTLDYIRMFGSEAYVLTPKGKHTKLDPKGKKLILVGYDKD 518
BLAST of mRNA_H-elongata_contig556.12983.1 vs. uniprot
Match: A0A8I6XT42_HORVV (Uncharacterized protein n=6 Tax=cellular organisms TaxID=131567 RepID=A0A8I6XT42_HORVV) HSP 1 Score: 51.6 bits (122), Expect = 1.120e-5 Identity = 27/79 (34.18%), Postives = 42/79 (53.16%), Query Frame = 1
Query: 4 WAEAMAYAYDIWNRCISSSLDSGTSPYELWYGRRPTLDNVPPFGTVGYLRRSKPGQNLAPRGASCIMLGLAPDVPRDTF 240
W A+ NR S S++ T+PYELWYG+RP L + +G Y+++ +P + L P+ CI +G + TF
Sbjct: 524 WGYALETVAFTLNRAPSKSVE--TTPYELWYGKRPKLSFLKVWGCDAYVKKLQP-EKLEPKAKKCIFIGYPKETVGYTF 599 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig556.12983.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig556.12983.1 >prot_H-elongata_contig556.12983.1 ID=prot_H-elongata_contig556.12983.1|Name=mRNA_H-elongata_contig556.12983.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=77bp MAYAYDIWNRCISSSLDSGTSPYELWYGRRPTLDNVPPFGTVGYLRRSKPback to top mRNA from alignment at H-elongata_contig556:2369..2614+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig556.12983.1 ID=mRNA_H-elongata_contig556.12983.1|Name=mRNA_H-elongata_contig556.12983.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=246bp|location=Sequence derived from alignment at H-elongata_contig556:2369..2614+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig556:2369..2614+ >mRNA_H-elongata_contig556.12983.1 ID=mRNA_H-elongata_contig556.12983.1|Name=mRNA_H-elongata_contig556.12983.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=462bp|location=Sequence derived from alignment at H-elongata_contig556:2369..2614+ (Himanthalia elongata Himel1 dioecious)back to top |