mRNA_H-elongata_contig556.12983.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig556.12983.1
Unique NamemRNA_H-elongata_contig556.12983.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig556.12983.1 vs. uniprot
Match: A0A151I9F2_9HYME (Copia protein n=1 Tax=Cyphomyrmex costatus TaxID=456900 RepID=A0A151I9F2_9HYME)

HSP 1 Score: 66.6 bits (161), Expect = 1.620e-12
Identity = 36/82 (43.90%), Postives = 50/82 (60.98%), Query Frame = 1
Query:    4 WAEAMAYAYDIWNRCISSSLDSGTSPYELWYGRRPTLDNVPPFGTVGYLRRSKPGQN-LAPRGASCIMLGLAPDVPRDTFRV 246
            WAEA+A A  I NRCI++ L  G +P+E W+GRRP ++++  FG   ++    PG+  L PRG  C  LG   D P  +FRV
Sbjct:   16 WAEAVATANYIRNRCITNVL-KGKTPFEAWHGRRPNVEHLRIFGETAFMLDKTPGKGKLDPRGIKCTFLGY--DEPSRSFRV 94          
BLAST of mRNA_H-elongata_contig556.12983.1 vs. uniprot
Match: A0A0J7N2J7_LASNI (Retrovirus-related pol polyprotein from transposon tnt 1-94 n=1 Tax=Lasius niger TaxID=67767 RepID=A0A0J7N2J7_LASNI)

HSP 1 Score: 68.6 bits (166), Expect = 1.180e-11
Identity = 34/70 (48.57%), Postives = 44/70 (62.86%), Query Frame = 1
Query:    4 WAEAMAYAYDIWNRCISSSLDSGTSPYELWYGRRPTLDNVPPFGTVGYLRRSKPGQN-LAPRGASCIMLG 210
            WAE +A A  + NRCI+ +L   T PYELWYG+RP + ++  FG V Y+    PG+  L PRG  CI LG
Sbjct:  420 WAEGVATANFVRNRCITKTLTDKT-PYELWYGKRPNVKHIRIFGEVAYMLDKTPGKGKLEPRGIRCIFLG 488          
BLAST of mRNA_H-elongata_contig556.12983.1 vs. uniprot
Match: Q9AYC5_ORYSJ (Putative retroelement pol polyprotein n=2 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=Q9AYC5_ORYSJ)

HSP 1 Score: 55.5 bits (132), Expect = 4.840e-7
Identity = 27/70 (38.57%), Postives = 42/70 (60.00%), Query Frame = 1
Query:    4 WAEAMAYAYDIWNRCISSSLDSGTSPYELWYGRRPTLDNVPPFGTVGYLRRSKPG-QNLAPRGASCIMLG 210
            W EA+  A  + ++    SLD G +PYE WYGRRPT++++  F  VGY++ +KP  + L  R    + +G
Sbjct:  586 WGEAVVAAVYVLSKSPMKSLD-GVTPYEAWYGRRPTVEHLRVFECVGYVKTAKPNLRKLDDRSTRMVFIG 654          
BLAST of mRNA_H-elongata_contig556.12983.1 vs. uniprot
Match: A0A0P4VIA9_9HEMI (Putative retrovirus-related pol polyprotein from transposon tnt (Fragment) n=1 Tax=Rhodnius neglectus TaxID=72488 RepID=A0A0P4VIA9_9HEMI)

HSP 1 Score: 51.6 bits (122), Expect = 1.000e-6
Identity = 28/70 (40.00%), Postives = 39/70 (55.71%), Query Frame = 1
Query:    4 WAEAMAYAYDIWNRCISSSLDSGTSPYELWYGRRPTLDNVPPFGTVGYLRRSKPGQN-LAPRGASCIMLG 210
            WAEA+A A  I NRC SSSL+ G  PY +WY +  T+     FG  GY     P ++   P+   C+++G
Sbjct:    2 WAEAIATACYIRNRCPSSSLNGGI-PYTIWYEKPFTVSYFRSFGCKGYSLDKTPNKDKFQPKAKECVLVG 70          
BLAST of mRNA_H-elongata_contig556.12983.1 vs. uniprot
Match: UPI00115E8C8E (hypothetical protein n=1 Tax=Klebsiella pneumoniae TaxID=573 RepID=UPI00115E8C8E)

HSP 1 Score: 52.8 bits (125), Expect = 2.180e-6
Identity = 27/79 (34.18%), Postives = 43/79 (54.43%), Query Frame = 1
Query:    4 WAEAMAYAYDIWNRCISSSLDSGTSPYELWYGRRPTLDNVPPFGTVGYLRRSKPGQNLAPRGASCIMLGLAPDVPRDTF 240
            W  A+  A    NR  S S++  T+PYELWYG+RP L  +  +G   Y+++ +P + L P+   C+ +G   +    TF
Sbjct:   12 WGYALETAAFTLNRAPSKSVE--TTPYELWYGKRPKLSFLKVWGCDAYVKKLQP-EKLEPKAEKCVFIGYPKETVGYTF 87          
BLAST of mRNA_H-elongata_contig556.12983.1 vs. uniprot
Match: A0A0J7NGT3_LASNI (Retrovirus-related gag-pol polyprotein n=2 Tax=Lasius niger TaxID=67767 RepID=A0A0J7NGT3_LASNI)

HSP 1 Score: 53.5 bits (127), Expect = 2.340e-6
Identity = 31/81 (38.27%), Postives = 47/81 (58.02%), Query Frame = 1
Query:    4 WAEAMAYAYDIWNRCISSSLDSGTSPYELWYGRRPTLDNVPPFGTVGYLRRSKPGQN-LAPRGASCIMLGLAPDVPRDTFR 243
            WA+A+A A  I NRC SSSL  G +PYE W G  P L+++  FG   ++  + P ++  APR    +++G     PR++ R
Sbjct:  632 WADAVATACHIRNRCPSSSL-GGITPYEKWTGELPKLEHLRTFGAKVFVLDNNPAKDKFAPRSIEGVLIGY----PRESKR 707          
BLAST of mRNA_H-elongata_contig556.12983.1 vs. uniprot
Match: UPI0012D47DD2 (hypothetical protein n=1 Tax=Levilactobacillus brevis TaxID=1580 RepID=UPI0012D47DD2)

HSP 1 Score: 53.1 bits (126), Expect = 2.510e-6
Identity = 28/79 (35.44%), Postives = 43/79 (54.43%), Query Frame = 1
Query:    4 WAEAMAYAYDIWNRCISSSLDSGTSPYELWYGRRPTLDNVPPFGTVGYLRRSKPGQNLAPRGASCIMLGLAPDVPRDTF 240
            W  A+  A    NR  S S++  T+PYELWYG+RP L  +  +G   Y+++ +P + L P+   CI +G   +    TF
Sbjct:   20 WGYALETAAFTLNRAPSKSVE--TTPYELWYGKRPKLSFLKVWGCDAYVKKLQP-EKLEPKAEKCIFIGYPKETVGYTF 95          
BLAST of mRNA_H-elongata_contig556.12983.1 vs. uniprot
Match: UPI00136F9A8D (hypothetical protein n=1 Tax=Ligilactobacillus salivarius TaxID=1624 RepID=UPI00136F9A8D)

HSP 1 Score: 52.8 bits (125), Expect = 4.170e-6
Identity = 27/79 (34.18%), Postives = 43/79 (54.43%), Query Frame = 1
Query:    4 WAEAMAYAYDIWNRCISSSLDSGTSPYELWYGRRPTLDNVPPFGTVGYLRRSKPGQNLAPRGASCIMLGLAPDVPRDTF 240
            W  A+  A    NR  S S++  T+PYELWYG+RP L  +  +G   Y+++ +P + L P+   C+ +G   +    TF
Sbjct:   12 WGYALETAAFTLNRAPSKSVE--TTPYELWYGKRPKLSFLKVWGCDAYVKKLQP-EKLEPKAEKCVFIGYPKETVGYTF 87          
BLAST of mRNA_H-elongata_contig556.12983.1 vs. uniprot
Match: A0A0J7K725_LASNI (Gag-pol polyprotein n=1 Tax=Lasius niger TaxID=67767 RepID=A0A0J7K725_LASNI)

HSP 1 Score: 51.6 bits (122), Expect = 1.110e-5
Identity = 28/75 (37.33%), Postives = 44/75 (58.67%), Query Frame = 1
Query:    1 LWAEAMAYAYDIWNRCISSSLDSGTSPYELWYGRRPTLDNVPPFGTVGYLRRSKPGQN-LAPRGASCIMLGLAPD 222
            LWAEA+  A  + NR  ++ + + T P+E+W+GR+PTLD +  FG+  Y+   K     L P+G   I++G   D
Sbjct:  445 LWAEAINTAVYVLNRTPTTQVLNST-PFEIWHGRKPTLDYIRMFGSEAYVLTPKGKHTKLDPKGKKLILVGYDKD 518          
BLAST of mRNA_H-elongata_contig556.12983.1 vs. uniprot
Match: A0A8I6XT42_HORVV (Uncharacterized protein n=6 Tax=cellular organisms TaxID=131567 RepID=A0A8I6XT42_HORVV)

HSP 1 Score: 51.6 bits (122), Expect = 1.120e-5
Identity = 27/79 (34.18%), Postives = 42/79 (53.16%), Query Frame = 1
Query:    4 WAEAMAYAYDIWNRCISSSLDSGTSPYELWYGRRPTLDNVPPFGTVGYLRRSKPGQNLAPRGASCIMLGLAPDVPRDTF 240
            W  A+       NR  S S++  T+PYELWYG+RP L  +  +G   Y+++ +P + L P+   CI +G   +    TF
Sbjct:  524 WGYALETVAFTLNRAPSKSVE--TTPYELWYGKRPKLSFLKVWGCDAYVKKLQP-EKLEPKAKKCIFIGYPKETVGYTF 599          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig556.12983.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A151I9F2_9HYME1.620e-1243.90Copia protein n=1 Tax=Cyphomyrmex costatus TaxID=4... [more]
A0A0J7N2J7_LASNI1.180e-1148.57Retrovirus-related pol polyprotein from transposon... [more]
Q9AYC5_ORYSJ4.840e-738.57Putative retroelement pol polyprotein n=2 Tax=Oryz... [more]
A0A0P4VIA9_9HEMI1.000e-640.00Putative retrovirus-related pol polyprotein from t... [more]
UPI00115E8C8E2.180e-634.18hypothetical protein n=1 Tax=Klebsiella pneumoniae... [more]
A0A0J7NGT3_LASNI2.340e-638.27Retrovirus-related gag-pol polyprotein n=2 Tax=Las... [more]
UPI0012D47DD22.510e-635.44hypothetical protein n=1 Tax=Levilactobacillus bre... [more]
UPI00136F9A8D4.170e-634.18hypothetical protein n=1 Tax=Ligilactobacillus sal... [more]
A0A0J7K725_LASNI1.110e-537.33Gag-pol polyprotein n=1 Tax=Lasius niger TaxID=677... [more]
A0A8I6XT42_HORVV1.120e-534.18Uncharacterized protein n=6 Tax=cellular organisms... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig556contigH-elongata_contig556:2369..2614 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size246
Cds size231
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930906.3810756-UTR-H-elongata_contig556:2368..23831622930906.3810756-UTR-H-elongata_contig556:2368..2383Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig556 2369..2383 +
1691679619.4690435-UTR-H-elongata_contig556:2368..23831691679619.4690435-UTR-H-elongata_contig556:2368..2383Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig556 2369..2383 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930906.399692-CDS-H-elongata_contig556:2383..26141622930906.399692-CDS-H-elongata_contig556:2383..2614Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig556 2384..2614 +
1691679619.4796119-CDS-H-elongata_contig556:2383..26141691679619.4796119-CDS-H-elongata_contig556:2383..2614Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig556 2384..2614 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig556.12983.1prot_H-elongata_contig556.12983.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig556 2384..2614 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig556.12983.1

>prot_H-elongata_contig556.12983.1 ID=prot_H-elongata_contig556.12983.1|Name=mRNA_H-elongata_contig556.12983.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=77bp
MAYAYDIWNRCISSSLDSGTSPYELWYGRRPTLDNVPPFGTVGYLRRSKP
GQNLAPRGASCIMLGLAPDVPRDTFRV
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mRNA from alignment at H-elongata_contig556:2369..2614+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig556.12983.1 ID=mRNA_H-elongata_contig556.12983.1|Name=mRNA_H-elongata_contig556.12983.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=246bp|location=Sequence derived from alignment at H-elongata_contig556:2369..2614+ (Himanthalia elongata Himel1 dioecious)
CTATGGGCGGAAGCTATGGCGTACGCATACGATATATGGAACCGATGCAT CTCTTCTTCCCTCGACAGCGGCACCTCGCCATATGAGCTTTGGTACGGCC GACGTCCGACATTGGACAACGTCCCTCCATTCGGGACCGTGGGATATCTG CGACGGTCGAAGCCGGGGCAAAACCTAGCCCCCCGCGGAGCGAGCTGCAT CATGCTCGGGCTGGCCCCTGACGTCCCGCGGGACACTTTCCGGGTG
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Coding sequence (CDS) from alignment at H-elongata_contig556:2369..2614+

>mRNA_H-elongata_contig556.12983.1 ID=mRNA_H-elongata_contig556.12983.1|Name=mRNA_H-elongata_contig556.12983.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=462bp|location=Sequence derived from alignment at H-elongata_contig556:2369..2614+ (Himanthalia elongata Himel1 dioecious)
ATGGCGTACGCATACGATATATGGAACCGATGCATCTCTTCTTCCCTCGA
CAGCGGCACCTCGCCATATGAGCTTTGGTACGGCCGACGTCCGACATTGG
ACAACGTCCCTCCATTCGGGACCGTGGGATATCTGCGACGGTCGAAGCCG
GGGCAAAACCTAGCCCCCCGCGGAGCGAGCTGCATCATGCTCGGGCTGGC
CCCTGACGTCCCGCGGGACACTTTCCGGGTGATGGCGTACGCATACGATA
TATGGAACCGATGCATCTCTTCTTCCCTCGACAGCGGCACCTCGCCATAT
GAGCTTTGGTACGGCCGACGTCCGACATTGGACAACGTCCCTCCATTCGG
GACCGTGGGATATCTGCGACGGTCGAAGCCGGGGCAAAACCTAGCCCCCC
GCGGAGCGAGCTGCATCATGCTCGGGCTGGCCCCTGACGTCCCGCGGGAC
ACTTTCCGGGTG
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