mRNA_H-elongata_contig55501.12966.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig55501.12966.1 vs. uniprot
Match: D7G7U9_ECTSI (E3 ubiquitin protein ligase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7U9_ECTSI) HSP 1 Score: 119 bits (298), Expect = 6.320e-30 Identity = 52/58 (89.66%), Postives = 54/58 (93.10%), Query Frame = 1
Query: 1 QMIKCSVCQDKKKNRVITKCFHMFCDGCLEQSIKSRNRKCPACTKAYGLDDVHELWLT 174
+MIKCSVCQDKKKNRVITKCFHMFCDGCLE+SIKSRNRKCPAC K Y DDVHELWLT
Sbjct: 833 KMIKCSVCQDKKKNRVITKCFHMFCDGCLEKSIKSRNRKCPACGKVYAPDDVHELWLT 890
BLAST of mRNA_H-elongata_contig55501.12966.1 vs. uniprot
Match: A0A662Y869_9STRA (E3 ubiquitin protein ligase n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662Y869_9STRA) HSP 1 Score: 92.4 bits (228), Expect = 1.830e-20 Identity = 35/58 (60.34%), Postives = 48/58 (82.76%), Query Frame = 1
Query: 1 QMIKCSVCQDKKKNRVITKCFHMFCDGCLEQSIKSRNRKCPACTKAYGLDDVHELWLT 174
+++KCSVCQD++K+ +ITKCFHMFC C++ ++KSRNRKCP C K +G DDV +WLT
Sbjct: 811 KLVKCSVCQDRRKDVIITKCFHMFCKECVDNNLKSRNRKCPTCKKMFGQDDVKAVWLT 868
BLAST of mRNA_H-elongata_contig55501.12966.1 vs. uniprot
Match: A0A7S2Y421_9STRA (E3 ubiquitin protein ligase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y421_9STRA) HSP 1 Score: 90.9 bits (224), Expect = 1.870e-20 Identity = 34/57 (59.65%), Postives = 48/57 (84.21%), Query Frame = 1
Query: 4 MIKCSVCQDKKKNRVITKCFHMFCDGCLEQSIKSRNRKCPACTKAYGLDDVHELWLT 174
M++CSVCQD++KN V+TKCFHMFC C+++++K R+RKCPAC + +G DDV +WLT
Sbjct: 269 MLRCSVCQDRRKNTVLTKCFHMFCRECVQENLKIRSRKCPACGRMFGQDDVRTIWLT 325
BLAST of mRNA_H-elongata_contig55501.12966.1 vs. uniprot
Match: K3WQG6_GLOUD (E3 ubiquitin protein ligase n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WQG6_GLOUD) HSP 1 Score: 89.4 bits (220), Expect = 2.210e-19 Identity = 33/58 (56.90%), Postives = 46/58 (79.31%), Query Frame = 1
Query: 1 QMIKCSVCQDKKKNRVITKCFHMFCDGCLEQSIKSRNRKCPACTKAYGLDDVHELWLT 174
+++ CSVCQD++KN +I+KCFHMFC C++ ++KSRNRKCP C K +G DDV +W T
Sbjct: 774 KLVNCSVCQDQRKNVLISKCFHMFCKDCIDSNLKSRNRKCPTCKKMFGQDDVKSVWFT 831
BLAST of mRNA_H-elongata_contig55501.12966.1 vs. uniprot
Match: G4YGB4_PHYSP (E3 ubiquitin protein ligase n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4YGB4_PHYSP) HSP 1 Score: 89.0 bits (219), Expect = 3.020e-19 Identity = 33/58 (56.90%), Postives = 46/58 (79.31%), Query Frame = 1
Query: 1 QMIKCSVCQDKKKNRVITKCFHMFCDGCLEQSIKSRNRKCPACTKAYGLDDVHELWLT 174
+++ CSVCQD++K+ +I+KCFHMFC C+E ++KSRNRKCP C K +G DDV +W T
Sbjct: 754 KLVNCSVCQDRRKDVIISKCFHMFCKECIENNLKSRNRKCPTCKKMFGHDDVKSVWFT 811
BLAST of mRNA_H-elongata_contig55501.12966.1 vs. uniprot
Match: W2QVV9_PHYPN (E3 ubiquitin protein ligase n=9 Tax=Phytophthora TaxID=4783 RepID=W2QVV9_PHYPN) HSP 1 Score: 89.0 bits (219), Expect = 3.020e-19 Identity = 33/58 (56.90%), Postives = 46/58 (79.31%), Query Frame = 1
Query: 1 QMIKCSVCQDKKKNRVITKCFHMFCDGCLEQSIKSRNRKCPACTKAYGLDDVHELWLT 174
+++ CSVCQD++K+ +I+KCFHMFC C+E ++KSRNRKCP C K +G DDV +W T
Sbjct: 780 KLVNCSVCQDRRKDVIISKCFHMFCKECIENNLKSRNRKCPTCKKMFGHDDVKSVWFT 837
BLAST of mRNA_H-elongata_contig55501.12966.1 vs. uniprot
Match: A0A484E9R0_BRELC (E3 ubiquitin protein ligase n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484E9R0_BRELC) HSP 1 Score: 89.0 bits (219), Expect = 3.020e-19 Identity = 33/58 (56.90%), Postives = 46/58 (79.31%), Query Frame = 1
Query: 1 QMIKCSVCQDKKKNRVITKCFHMFCDGCLEQSIKSRNRKCPACTKAYGLDDVHELWLT 174
+++ CSVCQD++K+ +ITKCFH+FC C+E ++KSRNRKCP C K +G DDV +W T
Sbjct: 800 KLVNCSVCQDRRKDVIITKCFHIFCKECIENNLKSRNRKCPTCKKMFGQDDVKTVWFT 857
BLAST of mRNA_H-elongata_contig55501.12966.1 vs. uniprot
Match: A0A5D6XN03_9STRA (E3 ubiquitin protein ligase n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XN03_9STRA) HSP 1 Score: 89.0 bits (219), Expect = 3.020e-19 Identity = 33/58 (56.90%), Postives = 46/58 (79.31%), Query Frame = 1
Query: 1 QMIKCSVCQDKKKNRVITKCFHMFCDGCLEQSIKSRNRKCPACTKAYGLDDVHELWLT 174
+++KCSVCQD++KN ++ KCFHMFC C++ ++KSRNRKCP C K +G DDV +W T
Sbjct: 803 KLVKCSVCQDQRKNVLLAKCFHMFCRDCVDSNLKSRNRKCPTCKKMFGQDDVKAVWFT 860
BLAST of mRNA_H-elongata_contig55501.12966.1 vs. uniprot
Match: A0A2P4YBG3_9STRA (E3 ubiquitin protein ligase (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4YBG3_9STRA) HSP 1 Score: 87.4 bits (215), Expect = 3.680e-19 Identity = 32/58 (55.17%), Postives = 46/58 (79.31%), Query Frame = 1
Query: 1 QMIKCSVCQDKKKNRVITKCFHMFCDGCLEQSIKSRNRKCPACTKAYGLDDVHELWLT 174
+++ CSVCQD++K+ +I+KCFHMFC C++ ++KSRNRKCP C K +G DDV +W T
Sbjct: 267 KLVNCSVCQDRRKDVIISKCFHMFCKECIDNNLKSRNRKCPTCKKMFGHDDVKTVWFT 324
BLAST of mRNA_H-elongata_contig55501.12966.1 vs. uniprot
Match: A0A329T6M6_9STRA (E3 ubiquitin protein ligase n=1 Tax=Phytophthora cactorum TaxID=29920 RepID=A0A329T6M6_9STRA) HSP 1 Score: 88.6 bits (218), Expect = 4.120e-19 Identity = 33/58 (56.90%), Postives = 46/58 (79.31%), Query Frame = 1
Query: 1 QMIKCSVCQDKKKNRVITKCFHMFCDGCLEQSIKSRNRKCPACTKAYGLDDVHELWLT 174
+++ CSVCQD++K+ +I+KCFHMFC C+E ++KSRNRKCP C K +G DDV +W T
Sbjct: 780 KLVNCSVCQDRRKDVIISKCFHMFCKECIENNLKSRNRKCPTCKKMFGHDDVKTVWFT 837 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig55501.12966.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig55501.12966.1 >prot_H-elongata_contig55501.12966.1 ID=prot_H-elongata_contig55501.12966.1|Name=mRNA_H-elongata_contig55501.12966.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=58bp MIKCSVCQDKKKNRVITKCFHMFCDGCLEQSIKSRNRKCPACTKAYGLDDback to top mRNA from alignment at H-elongata_contig55501:897..1677- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig55501.12966.1 ID=mRNA_H-elongata_contig55501.12966.1|Name=mRNA_H-elongata_contig55501.12966.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=781bp|location=Sequence derived from alignment at H-elongata_contig55501:897..1677- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig55501:897..1677- >mRNA_H-elongata_contig55501.12966.1 ID=mRNA_H-elongata_contig55501.12966.1|Name=mRNA_H-elongata_contig55501.12966.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=348bp|location=Sequence derived from alignment at H-elongata_contig55501:897..1677- (Himanthalia elongata Himel1 dioecious)back to top |