mRNA_H-elongata_contig55479.12964.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig55479.12964.1
Unique NamemRNA_H-elongata_contig55479.12964.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig55479.12964.1 vs. uniprot
Match: D7FQ17_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ17_ECTSI)

HSP 1 Score: 94.7 bits (234), Expect = 2.710e-21
Identity = 42/57 (73.68%), Postives = 46/57 (80.70%), Query Frame = 1 
Query:    1 MDANAREHLEKIESEGRDCRPGGYGRKYQFVDPDFPADTFSVGNAQCRHQLASQWKV 171
            ++ NARE LE IES+GR CRPG YGRK Q+ DPDFP D  SVGNAQCR QLASQWKV
Sbjct: 3227 VETNARESLEDIESQGRGCRPGAYGRKLQYADPDFPPDNSSVGNAQCRQQLASQWKV 3283
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BLAST of mRNA_H-elongata_contig55479.12964.1 vs. uniprot
Match: A0A7S3UUX7_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UUX7_HETAK)

HSP 1 Score: 60.5 bits (145), Expect = 1.790e-9
Identity = 28/54 (51.85%), Postives = 36/54 (66.67%), Query Frame = 1 
Query:   10 NAREHLEKIESEGRDCRPGGYGRKYQFVDPDFPADTFSVGNAQCRHQLASQWKV 171
            NARE L+ IE+E +DC+ G YGR+YQFVDP FPA   S+G+ +    L   WK 
Sbjct:  167 NAREKLDAIEAEQKDCKAGRYGRRYQFVDPAFPATEASLGSPELA-ALVKSWKA 219
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig55479.12964.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FQ17_ECTSI2.710e-2173.68Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S3UUX7_HETAK1.790e-951.85Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig55479contigH-elongata_contig55479:845..1018 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score96.3
Seed ortholog evalue5.1e-18
Seed eggNOG ortholog2880.D7FQ17
KEGG rclassRC00005,RC00059
KEGG koko:K08582,ko:K09667
KEGG ReactionR09304,R09676
KEGG Pathwayko00514,ko04931,map00514,map04931
EggNOG free text desc.protein N-acetylglucosaminyltransferase activity
EggNOG OGsCOG3914@1,KOG0045@1,KOG0045@2759,KOG4626@2759
EC2.4.1.255
COG Functional cat.O
CAZyGT41
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01002,ko01003,ko03036
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size174
Cds size174
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930904.4223397-CDS-H-elongata_contig55479:844..10181622930904.4223397-CDS-H-elongata_contig55479:844..1018Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55479 845..1018 +
1691679618.7578192-CDS-H-elongata_contig55479:844..10181691679618.7578192-CDS-H-elongata_contig55479:844..1018Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55479 845..1018 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig55479.12964.1prot_H-elongata_contig55479.12964.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig55479 845..1018 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig55479.12964.1

>prot_H-elongata_contig55479.12964.1 ID=prot_H-elongata_contig55479.12964.1|Name=mRNA_H-elongata_contig55479.12964.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=58bp
MDANAREHLEKIESEGRDCRPGGYGRKYQFVDPDFPADTFSVGNAQCRHQ
LASQWKV*
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mRNA from alignment at H-elongata_contig55479:845..1018+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig55479.12964.1 ID=mRNA_H-elongata_contig55479.12964.1|Name=mRNA_H-elongata_contig55479.12964.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=174bp|location=Sequence derived from alignment at H-elongata_contig55479:845..1018+ (Himanthalia elongata Himel1 dioecious)
ATGGACGCTAATGCTCGCGAGCACTTGGAAAAAATAGAGTCGGAAGGACG
GGACTGTCGGCCAGGTGGTTACGGCAGGAAATATCAGTTCGTGGATCCCG
ATTTCCCCGCCGATACTTTTTCTGTGGGAAACGCTCAATGCCGTCACCAA
CTGGCCTCGCAGTGGAAGGTATGA
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Coding sequence (CDS) from alignment at H-elongata_contig55479:845..1018+

>mRNA_H-elongata_contig55479.12964.1 ID=mRNA_H-elongata_contig55479.12964.1|Name=mRNA_H-elongata_contig55479.12964.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=348bp|location=Sequence derived from alignment at H-elongata_contig55479:845..1018+ (Himanthalia elongata Himel1 dioecious)
ATGGACGCTAATGCTCGCGAGCACTTGGAAAAAATAGAGTCGGAAGGACG
GGACTGTCGGCCAGGTGGTTACGGCAGGAAATATCAGTTCGTGGATCCCG
ATTTCCCCGCCGATACTTTTTCTGTGGGAAACGCTCAATGCCGTCACCAA
CTGGCCTCGCAGTGGAAGGTATGAATGGACGCTAATGCTCGCGAGCACTT
GGAAAAAATAGAGTCGGAAGGACGGGACTGTCGGCCAGGTGGTTACGGCA
GGAAATATCAGTTCGTGGATCCCGATTTCCCCGCCGATACTTTTTCTGTG
GGAAACGCTCAATGCCGTCACCAACTGGCCTCGCAGTGGAAGGTATGA
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