mRNA_H-elongata_contig55339.12949.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig55339.12949.1
Unique NamemRNA_H-elongata_contig55339.12949.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig55339.12949.1 vs. uniprot
Match: D8LRX5_ECTSI (LigB domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRX5_ECTSI)

HSP 1 Score: 326 bits (836), Expect = 7.320e-110
Identity = 151/251 (60.16%), Postives = 185/251 (73.71%), Query Frame = 1
Query:    1 MDEDSAVVEWYRTFTKEWPKPSAIVVISAHWEGRGSVRVTAGAKHPLFYDYYGFPRHTYQLSYDCPGEPALADRILGLLREAGLPARGEKSRGYDHGVFVPLKLMYPDADIPVVQVSLLAGLDEEEHLKIGEALKTLLQDENILVIGSGQSTHNFSASSNSYTRRKYMRMEVEFAAWLKETATDPHLPPQERRRRLLEWEKVAPNARVAHPREEHLLPLHVVSAYTGFSPGRVIYDEFVPGEMSMASMAFW 753
            +D  SA  +WYRTFTK+W KPSAIVV+SAHWEGRG+V+VT G KHPLF+DYYGFP + Y L Y  PG P LA RI+ LL   G  ARG+ SRGYDHG F+PLKLMYPDAD+PVVQVSLL GLD E+HLK+G+ LK L+ + ++L++GSGQ+TH   +    Y   K    E  F  WLKETA  P + P+ER+RRL EWE+ AP+ R AHPREEHLLPLHV +  TGF PG +I+D+F  G MS+A + FW
Sbjct:    4 IDATSAAAQWYRTFTKKWAKPSAIVVVSAHWEGRGAVKVTTGEKHPLFFDYYGFPDYCYDLEYAPPGHPELARRIIELLEADGFNARGDDSRGYDHGTFIPLKLMYPDADVPVVQVSLLGGLDPEKHLKMGKTLKKLVDERDVLIVGSGQATHGRGSDHRPYPPGKGAPKEEAFVDWLKETAASPAVTPEERQRRLREWERDAPHGRNAHPREEHLLPLHVAAGCTGFQPGSIIFDDFAMGHMSLACVGFW 254          
BLAST of mRNA_H-elongata_contig55339.12949.1 vs. uniprot
Match: A0A1J4QGR4_9GAMM (Dioxygenase n=1 Tax=Oceanisphaera psychrotolerans TaxID=1414654 RepID=A0A1J4QGR4_9GAMM)

HSP 1 Score: 223 bits (568), Expect = 2.990e-69
Identity = 116/221 (52.49%), Postives = 147/221 (66.52%), Query Frame = 1
Query:   19 VVEWYRTFTKEWPKPSAIVVISAHWEGRGSVRVTAGAKHPLFYDYYGFPRHTYQLSYDCPGEPALADRILGLLREAGLPARGEKSRGYDHGVFVPLKLMYPDADIPVVQVSLLAGLDEEEHLKIGEALKTLLQDENILVIGSGQSTHNFSASSNSYTRRKYMRMEVEFAAWLKETATDPHLPPQERRRRLLEWEKVAPNARVAHPREEHLLPLHVVSAYTG 681
            +V+W +       +P AI+++SAHWE      +TAGA+  L YDYYGFP  +Y++ Y CPGEPALA ++   L  AG+PAR +  RG+DHGVFVPLKLMYP+ADIP VQ+SL++ LD E+HL IG AL+ L  D N+LVIGSG S HN  A     T     R +  F AWL++T  +P L   ERRRRL+ W+  AP+AR  HPREEHLLPLHV     G
Sbjct:   28 MVQWLQDMAGRLRRPEAILIVSAHWEAAVPT-ITAGARPGLIYDYYGFPPESYEIQYPCPGEPALAQQVQQALMAAGMPARLDAERGFDHGVFVPLKLMYPEADIPCVQLSLVSSLDAEQHLNIGRALQALDYD-NLLVIGSGFSFHNMQAFFTPGTPEIKARNQA-FEAWLEDTCGNPRLEEAERRRRLIHWDS-APHARFCHPREEHLLPLHVCYGLAG 244          
BLAST of mRNA_H-elongata_contig55339.12949.1 vs. uniprot
Match: A0A836CEX8_9STRA (Catalytic LigB subunit of aromatic ring-opening dioxygenase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEX8_9STRA)

HSP 1 Score: 223 bits (567), Expect = 7.610e-69
Identity = 120/254 (47.24%), Postives = 159/254 (62.60%), Query Frame = 1
Query:    1 MDEDSAVVEWYRTFTKEWPKPSAIVVISAHWEGRG-SVRVTAGAKHPLFYDYYGFPRHTYQLSYDCPGEPALADRILGLLREAGLPARGEKSRGYDHGVFVPLKLMYPDADIPVVQVSLLAGLDEEEHLKIGEALKTLLQDENILVIGSGQSTHNFSASSNSYTRRKYMRMEVE---FAAWLKETATDPHLPPQERRRRLLEWEKVAPNARVAHPREEHLLPLHVVSAYTGFSPGRVIYDEFVPGEMSMASMAF 750
            +D++S V   +R  +   PKP  IV+ +AHWE  G  +RVT      L YDYYGFP  TY+L+Y  PG+P LA  I+ LL+ AG+ A  E  RG+DHGVF+PLK++YPDAD+PVV +SL + LD   H+ +G+AL  L     +LV GSG +THN     ++    + + +E     F  WLK T  D  +  QER RRLL W + AP+AR +HPREEHLLPLHV +   GF+ G ++ D  V G MSMAS AF
Sbjct:   36 IDKNSRVAADFRKLSTVLPKPKVIVICTAHWEADGPKIRVTGQPAPSLVYDYYGFPAETYKLTYPAPGDPQLAADIVALLKGAGISAELELERGFDHGVFIPLKMIYPDADVPVVAISLSSTLDPAFHISVGKALSGLA-GRGVLVFGSGMATHNLGMVRSAAAHGEGVPVEPRAGAFIDWLKATLGDG-VSAQERERRLLRWTEEAPHARHSHPREEHLLPLHVAAGAAGFAAGELVLDATVFGGMSMASFAF 287          
BLAST of mRNA_H-elongata_contig55339.12949.1 vs. uniprot
Match: UPI001F2DEB7A (dioxygenase n=2 Tax=unclassified Microbulbifer TaxID=2619833 RepID=UPI001F2DEB7A)

HSP 1 Score: 222 bits (566), Expect = 7.930e-69
Identity = 116/208 (55.77%), Postives = 143/208 (68.75%), Query Frame = 1
Query:   58 KPSAIVVISAHWEGRGSVRVTAGAKHPLFYDYYGFPRHTYQLSYDCPGEPALADRILGLLREAGLPARGEKSRGYDHGVFVPLKLMYPDADIPVVQVSLLAGLDEEEHLKIGEALKTLLQDENILVIGSGQSTHNFSASSNSYTRRKYMRMEVEFAAWLKETATDPHLPPQERRRRLLEWEKVAPNARVAHPREEHLLPLHVVSAYTG 681
            +PSAI+VISAHWE +    +TAGA+ PL YDY+GFP   Y + Y CPGEPALA ++   L++AG+PAR ++ RG+DHG+FVPLKLMYP+ADIP VQ+SL+  LD  EHL IG AL+ L  D N+LV+GSG S HN  A          +R  + F  WL ET TDP +P   R  RLL WE+ AP+AR  HPREEHLLPLHV    TG
Sbjct:   50 RPSAILVISAHWE-QSVPTITAGARPPLIYDYHGFPEEAYDIQYPCPGEPALAGQVHQALKQAGIPARLDQQRGFDHGLFVPLKLMYPEADIPCVQLSLVNSLDAGEHLAIGRALRALDYD-NLLVVGSGFSFHNMQAFFAPDNPEIQVR-NLAFEDWLHETCTDPTIPESRRTERLLHWER-APHARFCHPREEHLLPLHVCYGLTG 253          
BLAST of mRNA_H-elongata_contig55339.12949.1 vs. uniprot
Match: UPI001247FA37 (dioxygenase n=1 Tax=Marinobacter TaxID=2742 RepID=UPI001247FA37)

HSP 1 Score: 220 bits (560), Expect = 4.690e-68
Identity = 114/202 (56.44%), Postives = 142/202 (70.30%), Query Frame = 1
Query:   58 KPSAIVVISAHWEGRGSVRVTAGAKHPLFYDYYGFPRHTYQLSYDCPGEPALADRILGLLREAGLPARGEKSRGYDHGVFVPLKLMYPDADIPVVQVSLLAGLDEEEHLKIGEALKTLLQDENILVIGSGQSTHNFSASSNSYTRRKYMRMEVEFAAWLKETATDPHLPPQERRRRLLEWEKVAPNARVAHPREEHLLPLHV 663
            KPSAI+VISAHWE      +TAGAK PL YDYYGFP   Y++ Y CPGEPALA ++   L +AG+P R ++ RG+DHG+FVPLKLMYPDADIP +Q+SL++ LD   HL IG AL+ L  D N+LVIGSG   HN  A  +  T     R +  F  WL++T  D +LP  ER +RL++WE+ AP+AR  HPREEHLLPLHV
Sbjct:   41 KPSAILVISAHWE-ESVPTITAGAKPPLIYDYYGFPPEAYEIEYPCPGEPALAQQVYQALDQAGIPVRLDEQRGFDHGLFVPLKLMYPDADIPCIQLSLVSSLDAGTHLAIGRALQALDYD-NLLVIGSGFLFHNMRAFFSKQTPDIQARNQA-FEEWLEQTCGDTNLPESERAKRLVDWER-APHARFCHPREEHLLPLHV 238          
BLAST of mRNA_H-elongata_contig55339.12949.1 vs. uniprot
Match: UPI001402F277 (dioxygenase n=2 Tax=Marinobacter TaxID=2742 RepID=UPI001402F277)

HSP 1 Score: 219 bits (558), Expect = 9.710e-68
Identity = 120/234 (51.28%), Postives = 154/234 (65.81%), Query Frame = 1
Query:   58 KPSAIVVISAHWEGRGSVRVTAGAKHPLFYDYYGFPRHTYQLSYDCPGEPALADRILGLLREAGLPARGEKSRGYDHGVFVPLKLMYPDADIPVVQVSLLAGLDEEEHLKIGEALKTLLQDENILVIGSGQSTHNFSASSNSYTRRKYMRMEVEFAAWLKETATDPHLPPQERRRRLLEWEKVAPNARVAHPREEHLLPLHVVSAYTGFSPGRVIYDEFVPGEM--SMASMAFW 753
            KPSAI+VISAHWE      +TAGA   L YDYYGFP  +Y++ Y  PGEPALA +I   L  AGLPAR ++ RG+DHG+FVPLKLMYPDADIP VQ+SL+  LD E HL +G AL++L   EN+LVIGSG S HN  A  ++ +     R +  F AWL+ET +DP +P  +R  RL  W++ AP+AR  HPREEHL+PLHV     G +      DE +  ++   M+ M +W
Sbjct:   41 KPSAILVISAHWE-EAVPTITAGAHPSLIYDYYGFPPESYEIQYPSPGEPALAGQIAAALERAGLPARLDRERGFDHGLFVPLKLMYPDADIPCVQLSLVNTLDAETHLAMGRALQSL-DYENLLVIGSGFSFHNMRAFYSAVSSDDEARNQA-FEAWLEETCSDPAMPESQREDRLAHWDQ-APHARFCHPREEHLMPLHVCYGLAGKAS-----DEHLSAQILGKMSGMYYW 265          
BLAST of mRNA_H-elongata_contig55339.12949.1 vs. uniprot
Match: A0A7T1Y7Q8_9GAMM (Dioxygenase n=2 Tax=Halomonadaceae TaxID=28256 RepID=A0A7T1Y7Q8_9GAMM)

HSP 1 Score: 217 bits (553), Expect = 3.160e-67
Identity = 122/232 (52.59%), Postives = 150/232 (64.66%), Query Frame = 1
Query:   58 KPSAIVVISAHWEGRGSVRVTAGAKHPLFYDYYGFPRHTYQLSYDCPGEPALADRILGLLREAGLPARGEKSRGYDHGVFVPLKLMYPDADIPVVQVSLLAGLDEEEHLKIGEALKTLLQDENILVIGSGQSTHNFSASSNSYTRRKYMRMEVEFAAWLKETATDPHLPPQERRRRLLEWEKVAPNARVAHPREEHLLPLHVVSAYTGFSPGRVIYDEFVPGEMSMASMAFW 753
            +PSAI+VISAHWE      +TAGA   L YDYYGFP  +Y++ Y CPGEPALA +I   LR+AGLPAR ++ RG+DHG+FVPLKLMYP+ADIP VQ+SL+  LD   HL IG AL+ L  D+ +LVIGSG S HN  A     T     R +  F AWL+ET +D  L   +R  RLL+WE+ AP+AR  HPREEHLLPLHV     G  P        + G+ S   M +W
Sbjct:   25 RPSAILVISAHWEAAVPT-ITAGANPALIYDYYGFPPESYEIEYPCPGEPALARQIHQALRQAGLPARLDEHRGFDHGLFVPLKLMYPEADIPCVQLSLVDSLDAATHLAIGRALRALEVDD-LLVIGSGFSFHNMQAFFAPATPELDARNQA-FEAWLEETCSDARLTEAQRTERLLQWER-APHARFCHPREEHLLPLHVCYGLAG-QPSETHVSATILGKRS--GMFYW 249          
BLAST of mRNA_H-elongata_contig55339.12949.1 vs. uniprot
Match: A0A3N5ITC8_9BACT (Dioxygenase n=1 Tax=Calditrichaeota bacterium TaxID=2212469 RepID=A0A3N5ITC8_9BACT)

HSP 1 Score: 216 bits (550), Expect = 7.670e-67
Identity = 118/242 (48.76%), Postives = 157/242 (64.88%), Query Frame = 1
Query:   19 VVEWYRTFTKEWPKPSAIVVISAHWEGRGSVRVTAGAKHPLFYDYYGFPRHTYQLSYDCPGEPALADRILGLLREAGLPARGEKSRGYDHGVFVPLKLMYPDADIPVVQVSLLAGLDEEEHLKIGEALKTLLQDENILVIGSGQSTHNFSASSNSYTRRKYMRMEVE--FAAWLKETATDPHLPPQERRRRLLEWEKVAPNARVAHPREEHLLPLHVVSAYTGFSPGRVIYDEFVPGEMSMA 738
            +V++ ++ T E+  P+AI+V+SAHWE R +  +T+G+   LFYDYYGFP   Y++ Y  PG+PALAD I  LL+E    AR +  RG+DHG+FVPLK+MYPDA IP VQ+SL+ GL  E H+++G+AL  L Q +N+L++GSG S HN  A    +  R  M+      F  WL +T TD HL  QER  RL+ WE  AP AR  HPREEHLLPLHV     G +   V Y+E + G+ S A
Sbjct:   12 MVQFLQSITSEFEPPAAILVVSAHWEARRTT-ITSGSSPALFYDYYGFPDEAYKIQYPAPGDPALADLIFQLLQEHEFDARLDAERGFDHGLFVPLKIMYPDAHIPCVQLSLVQGLAAETHIRVGKALSALRQ-KNVLILGSGFSFHNMQA----FMSRGGMQDSKNDAFQKWLIDTCTDLHLSEQERESRLVHWES-APFARYCHPREEHLLPLHVCYGIAGTAAKLVFYEEIL-GKKSCA 245          
BLAST of mRNA_H-elongata_contig55339.12949.1 vs. uniprot
Match: A0A2D9ZYQ0_9GAMM (Dioxygenase n=1 Tax=Oceanospirillaceae bacterium TaxID=1899355 RepID=A0A2D9ZYQ0_9GAMM)

HSP 1 Score: 216 bits (551), Expect = 9.790e-67
Identity = 117/230 (50.87%), Postives = 147/230 (63.91%), Query Frame = 1
Query:   19 VVEWYRTFTKEWPKPSAIVVISAHWEGRGSVRVTAGAKHPLFYDYYGFPRHTYQLSYDCPGEPALADRILGLLREAGLPARGEKSRGYDHGVFVPLKLMYPDADIPVVQVSLLAGLDEEEHLKIGEALKTLLQDENILVIGSGQSTHNFSASSNSYTRRKYMRMEVEFAAWLKETATDPHLPPQERRRRLLEWEKVAPNARVAHPREEHLLPLHVVSAYTGFSPGRVIYD 708
            +V+       E  KP AI+V+SAHWE      VT  A   LFYDYYGFP  +Y + Y CPGEP LA +++ +L  AG+PA+ +  RG DHGVFVPLKL+YP+ADIP +Q+SL  GLD  EH++IGEAL+ L  D N+L+IGSG S HN  A     T  +  +M   FA WL +T  D  LP  ER +RL+EWEK AP AR  HPREEHL+PL V     G +  + IYD
Sbjct:   27 MVQCLTAMNGELRKPDAILVVSAHWEATIPT-VTTAANPSLFYDYYGFPEESYHIQYPCPGEPELAQQVMDVLTVAGIPAKSDGQRGLDHGVFVPLKLLYPEADIPTIQLSLKKGLDAAEHIRIGEALRGLNYD-NLLIIGSGFSFHNMRAFFTPETP-EIRQMNQAFAEWLNQTCGDTALPESERAQRLIEWEK-APAARFNHPREEHLIPLMVCYGLAGRASSK-IYD 251          
BLAST of mRNA_H-elongata_contig55339.12949.1 vs. uniprot
Match: UPI001F2A0FB6 (dioxygenase n=1 Tax=Microbulbifer sp. TT37 TaxID=2904250 RepID=UPI001F2A0FB6)

HSP 1 Score: 216 bits (551), Expect = 1.140e-66
Identity = 118/211 (55.92%), Postives = 140/211 (66.35%), Query Frame = 1
Query:   61 PSAIVVISAHWEGRGSVRVTAGAKHPLFYDYYGFPRHTYQLSYDCPGEPALADRILGLLREAGLPARGEKSRGYDHGVFVPLKLMYPDADIPVVQVSLLAGLDEEEHLKIGEALKTLLQDENILVIGSGQSTHN----FSASSNSYTRRKYMRMEVEFAAWLKETATDPHLPPQERRRRLLEWEKVAPNARVAHPREEHLLPLHVVSAYTG 681
            PSAI+VISAHWE +    +TAGA  PL YDY+GFP   Y + Y CPGEPALA ++  +L EAG+PAR +  RG+DHG+FVPLKLMYPDADIP VQ+SL+  LD  EHL IG AL+ L  D N+LVIGSG S HN    F+  S     R      + F  WL ET TDP +P  +R  RL  WE+ AP+AR  HPREEHLLPLHV     G
Sbjct:   43 PSAILVISAHWE-QPVPTITAGANPPLIYDYHGFPPEAYDIQYPCPGEPALAGQVHQVLEEAGIPARLDHQRGFDHGLFVPLKLMYPDADIPCVQLSLVNSLDAGEHLAIGRALQALDYD-NLLVIGSGFSFHNMRAFFAPDSPGIQARN-----LAFEDWLHETCTDPTMPEPQRAERLAHWER-APHARFCHPREEHLLPLHVCYGLAG 245          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig55339.12949.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LRX5_ECTSI7.320e-11060.16LigB domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A1J4QGR4_9GAMM2.990e-6952.49Dioxygenase n=1 Tax=Oceanisphaera psychrotolerans ... [more]
A0A836CEX8_9STRA7.610e-6947.24Catalytic LigB subunit of aromatic ring-opening di... [more]
UPI001F2DEB7A7.930e-6955.77dioxygenase n=2 Tax=unclassified Microbulbifer Tax... [more]
UPI001247FA374.690e-6856.44dioxygenase n=1 Tax=Marinobacter TaxID=2742 RepID=... [more]
UPI001402F2779.710e-6851.28dioxygenase n=2 Tax=Marinobacter TaxID=2742 RepID=... [more]
A0A7T1Y7Q8_9GAMM3.160e-6752.59Dioxygenase n=2 Tax=Halomonadaceae TaxID=28256 Rep... [more]
A0A3N5ITC8_9BACT7.670e-6748.76Dioxygenase n=1 Tax=Calditrichaeota bacterium TaxI... [more]
A0A2D9ZYQ0_9GAMM9.790e-6750.87Dioxygenase n=1 Tax=Oceanospirillaceae bacterium T... [more]
UPI001F2A0FB61.140e-6655.92dioxygenase n=1 Tax=Microbulbifer sp. TT37 TaxID=2... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig55339contigH-elongata_contig55339:477..2835 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score329.7
Seed ortholog evalue1.2e-87
Seed eggNOG ortholog2880.D8LRX5
KEGG rclassRC00387
KEGG koko:K15777
KEGG ReactionR08836
KEGG Pathwayko00965,map00965
EggNOG free text desc.ferrous iron binding
EggNOG OGs2QS66@2759,COG3384@1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionExtradiol ring-cleavage dioxygenase, class III enzyme, subunit B
Ec32 orthologEc-08_002800.1
Exons3
Model size753
Cds size753
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig55339.12949.1prot_H-elongata_contig55339.12949.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig55339 477..2835 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930902.3188574-CDS-H-elongata_contig55339:476..8211622930902.3188574-CDS-H-elongata_contig55339:476..821Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55339 477..821 +
1691679617.9390497-CDS-H-elongata_contig55339:476..8211691679617.9390497-CDS-H-elongata_contig55339:476..821Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55339 477..821 +
1622930902.3363736-CDS-H-elongata_contig55339:1654..17591622930902.3363736-CDS-H-elongata_contig55339:1654..1759Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55339 1655..1759 +
1691679617.9492044-CDS-H-elongata_contig55339:1654..17591691679617.9492044-CDS-H-elongata_contig55339:1654..1759Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55339 1655..1759 +
1622930902.3540483-CDS-H-elongata_contig55339:2532..28351622930902.3540483-CDS-H-elongata_contig55339:2532..2835Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55339 2533..2835 +
1691679617.9573143-CDS-H-elongata_contig55339:2532..28351691679617.9573143-CDS-H-elongata_contig55339:2532..2835Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55339 2533..2835 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig55339.12949.1

>prot_H-elongata_contig55339.12949.1 ID=prot_H-elongata_contig55339.12949.1|Name=mRNA_H-elongata_contig55339.12949.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=251bp
MDEDSAVVEWYRTFTKEWPKPSAIVVISAHWEGRGSVRVTAGAKHPLFYD
YYGFPRHTYQLSYDCPGEPALADRILGLLREAGLPARGEKSRGYDHGVFV
PLKLMYPDADIPVVQVSLLAGLDEEEHLKIGEALKTLLQDENILVIGSGQ
STHNFSASSNSYTRRKYMRMEVEFAAWLKETATDPHLPPQERRRRLLEWE
KVAPNARVAHPREEHLLPLHVVSAYTGFSPGRVIYDEFVPGEMSMASMAF
W
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mRNA from alignment at H-elongata_contig55339:477..2835+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig55339.12949.1 ID=mRNA_H-elongata_contig55339.12949.1|Name=mRNA_H-elongata_contig55339.12949.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2359bp|location=Sequence derived from alignment at H-elongata_contig55339:477..2835+ (Himanthalia elongata Himel1 dioecious)
ATGGATGAGGACAGTGCCGTCGTCGAGTGGTACCGAACGTTCACAAAGGA GTGGCCGAAACCGTCGGCCATAGTGGTCATATCGGCTCACTGGGAGGGAA GGGGTTCCGTAAGAGTCACCGCCGGGGCGAAGCACCCACTCTTCTACGAC TACTACGGATTCCCGCGGCACACGTACCAGCTTAGTTACGACTGCCCGGG AGAGCCGGCGCTCGCTGACCGCATACTGGGGCTGCTTCGGGAAGCGGGCC TTCCGGCGAGAGGAGAGAAATCTCGGGGGTATGACCACGGAGTGTTCGTC CCCTTGAAGCTCATGTATCCAGACGCTGATATTCCGGTTGTTCAGGTTGG TAATATATATATATAACATATGTAGTACATATCGGTAGTATACAATGCAT CATACTCTGTATATGTTATGAATGTCGCCGAAAAAGCAAGGATATATTCC TTGTACTCCAGTATATAGCTTTATAATTTTCCATTAGAGCCAGAAAATGG GCAAAAATCTTACAGCGGGCTGGATTTTGACATCAGTTTATTTGATAACT GAGTCAATCATTCATTTATTCCAACCCTCCGAACACTTCAATCATTCAAT CATTTCAACCCTCCGAACACCCATTCCTGGTTCGCTATCGTCAGGTTGTA ATGAGTACCGTACATTACTGTCTTTGAACACAAAATCGTCACATGTAATT AATCGTCTTCCCCAATAGTAATGACGTCATCGGGTCAACGGTGAAATACA ACATCGGGTCATCGAGGCCATCATTATATAACTAGGTACTCTATGACCGA GTGCACTCCTGAAAATAATGTTTATGTTTTCGTTTGGAAAGCTACACGCG AGTAATGGCGAATATACCTCTGGTCCTCCTGCAGATGCCGTTGCGAGATG GCACATCCCCTAGTTCTAGTGCCATCTTGGATACCGTTGCACCGGAGACG TAAGACCTCTTTTTCGTCCGTTGGTCTGGTACCCTTCTTATGTTCACCCT AGCAGAGGAGGTAATAAACGGCATCCTTTGCCCTCTAGTCCTCTGTTTTT ACGCAATTTTGCTTGTAGCTCTCGTATCCCTGCAATCTCGAGATAATTTC ACCCCAATGGCGCTAAATTGTACTAGTATTATATTTATTTACTGCACCCC TCTACCGCTTCACCTACCGTGTGTCTAGGTTTCTCTTCTTGCGGGCCTGG ACGAGGAGGAGCACCTAAAGATCGGGGAGGCGTTGAAGACGCTTCTTCAA GACGAGAACATCCTAGTTATTGGCAGTGGCCAGGTGAGACCCACCCTACC CTACCCTACCTTTAAGAAACTTGAGATGAGCTTCCACCAGCGTTGAAGGG TGTCGGTGGGCGAGGCGGATTGATGGTTTCGCCGGACATCGGAGACTGCG CAAATCTGGCGGGGATAGACTACCACGATAATATGTTACTTCTTTTGTTT GTCCCAGAAGCCCCACCCTTCAATCCCTTGTTAGATATATCCAAAAGGCT CAATGTTTTGGCAACCCTGAAAGCAGAGAAGTTATCATTCGCTACCGCGA TCTCGTATTTCATACTAAAGTGTGTATTTCATACTAAAGTGTGTATTTCA TACTAAAGTGTGTATTTCATACTAAAGTGTGTATTTCATACTAAAGTGTG TATTTCATACTAAAGTGTGTATTTCATACTAAAGTGCGTATTTCATACTA AAGTGCGTATTTTATACTAAAGTGCGTATTTCCTACTTAAGTGTGTATTT CATACTAAAGTGCTTATTTCATACTAAAGTGCTTATTTCATACTAAGGTG CGTATTTCATTCTAAAGTGCGTATTTCATTCTAAAGTGCGTATTTCATAC TAAAGTGATGAGGGAAGCTAACTCAATAGCAATCTACCGAATTGAACCTA GTGATAGCACACAGCCGCGAATTTCAATATTACAAATGCCAACAGTCCCA CCGCCCGCCCTTGTCTCTTCCCCCACATTCCCGCCTCGGCACTGTCTGTC GGCTCTCTGGAACTTCTTCGCCCCGCCCTCGGTACCGCCCCGCCTCCCAT TGTCAGTCGACGCACAATTTCAGCGCCTCCAGCAACTCGTATACTCGACG CAAGTACATGCGGATGGAAGTCGAATTCGCGGCGTGGCTAAAGGAAACCG CGACGGATCCCCACCTGCCCCCCCAGGAGCGACGGCGACGCCTATTGGAG TGGGAGAAAGTGGCGCCGAACGCGCGAGTCGCGCATCCGCGAGAGGAGCA CCTCTTACCGCTGCACGTGGTGTCCGCATACACCGGGTTCTCCCCAGGGA GAGTAATCTACGACGAGTTCGTTCCAGGGGAGATGTCCATGGCGAGCATG GCGTTCTGG
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Coding sequence (CDS) from alignment at H-elongata_contig55339:477..2835+

>mRNA_H-elongata_contig55339.12949.1 ID=mRNA_H-elongata_contig55339.12949.1|Name=mRNA_H-elongata_contig55339.12949.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1506bp|location=Sequence derived from alignment at H-elongata_contig55339:477..2835+ (Himanthalia elongata Himel1 dioecious)
ATGGATGAGGACAGTGCCGTCGTCGAGTGGTACCGAACGTTCACAAAGGA
GTGGCCGAAACCGTCGGCCATAGTGGTCATATCGGCTCACTGGGAGGGAA
GGGGTTCCGTAAGAGTCACCGCCGGGGCGAAGCACCCACTCTTCTACGAC
TACTACGGATTCCCGCGGCACACGTACCAGCTTAGTTACGACTGCCCGGG
AGAGCCGGCGCTCGCTGACCGCATACTGGGGCTGCTTCGGGAAGCGGGCC
TTCCGGCGAGAGGAGAGAAATCTCGGGGGTATGACCACGGAGTGTTCGTC
CCCTTGAAGCTCATGTATCCAGACGCTGATATTCCGGTTGTTCAGATGGA
TGAGGACAGTGCCGTCGTCGAGTGGTACCGAACGTTCACAAAGGAGTGGC
CGAAACCGTCGGCCATAGTGGTCATATCGGCTCACTGGGAGGGAAGGGGT
TCCGTAAGAGTCACCGCCGGGGCGAAGCACCCACTCTTCTACGACTACTA
CGGATTCCCGCGGCACACGTACCAGCTTAGTTACGACTGCCCGGGAGAGC
CGGCGCTCGCTGACCGCATACTGGGGCTGCTTCGGGAAGCGGGCCTTCCG
GCGAGAGGAGAGAAATCTCGGGGGTATGACCACGGAGTGTTCGTCCCCTT
GAAGCTCATGTATCCAGACGCTGATATTCCGGTTGTTCAGGTTTCTCTTC
TTGCGGGCCTGGACGAGGAGGAGCACCTAAAGATCGGGGAGGCGTTGAAG
ACGCTTCTTCAAGACGAGAACATCCTAGTTATTGGCAGTGGCCAGGTTTC
TCTTCTTGCGGGCCTGGACGAGGAGGAGCACCTAAAGATCGGGGAGGCGT
TGAAGACGCTTCTTCAAGACGAGAACATCCTAGTTATTGGCAGTGGCCAG
TCGACGCACAATTTCAGCGCCTCCAGCAACTCGTATACTCGACGCAAGTA
CATGCGGATGGAAGTCGAATTCGCGGCGTGGCTAAAGGAAACCGCGACGG
ATCCCCACCTGCCCCCCCAGGAGCGACGGCGACGCCTATTGGAGTGGGAG
AAAGTGGCGCCGAACGCGCGAGTCGCGCATCCGCGAGAGGAGCACCTCTT
ACCGCTGCACGTGGTGTCCGCATACACCGGGTTCTCCCCAGGGAGAGTAA
TCTACGACGAGTTCGTTCCAGGGGAGATGTCCATGGCGAGCATGGCGTTC
TGGTCGACGCACAATTTCAGCGCCTCCAGCAACTCGTATACTCGACGCAA
GTACATGCGGATGGAAGTCGAATTCGCGGCGTGGCTAAAGGAAACCGCGA
CGGATCCCCACCTGCCCCCCCAGGAGCGACGGCGACGCCTATTGGAGTGG
GAGAAAGTGGCGCCGAACGCGCGAGTCGCGCATCCGCGAGAGGAGCACCT
CTTACCGCTGCACGTGGTGTCCGCATACACCGGGTTCTCCCCAGGGAGAG
TAATCTACGACGAGTTCGTTCCAGGGGAGATGTCCATGGCGAGCATGGCG
TTCTGG
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