mRNA_H-elongata_contig54882.12883.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig54882.12883.1 vs. uniprot
Match: D7G068_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G068_ECTSI) HSP 1 Score: 151 bits (382), Expect = 1.970e-46 Identity = 64/80 (80.00%), Postives = 72/80 (90.00%), Query Frame = 1
Query: 1 MGGGRHFHIPKYVWSPSGGWHASPPNWKRNTAFAMVTIGFAFVAIARLSSERERRPVPPAFHIPSQRWCKHAKEDDPSLP 240
MGGGRHFH PK+VWSP+GGW +PP+WKRNT FA V IG AF+AIAR+SS+RERRP+ PAFHIPSQRWCKHAKEDDPSLP
Sbjct: 1 MGGGRHFHFPKHVWSPAGGWWVNPPHWKRNTGFAFVGIGLAFIAIARISSDRERRPIAPAFHIPSQRWCKHAKEDDPSLP 80
BLAST of mRNA_H-elongata_contig54882.12883.1 vs. uniprot
Match: A0A1Z5JPC4_FISSO (Uncharacterized protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JPC4_FISSO) HSP 1 Score: 108 bits (270), Expect = 2.400e-29 Identity = 47/79 (59.49%), Postives = 58/79 (73.42%), Query Frame = 1
Query: 1 MGGGRHFHIPKYVWSPSGGWHASPPNWKRNTAFAMVTIGFAFVAIARLSSERERRPVPPAFHIPSQRWCKHAKEDDPSL 237
MGGG +++PK VWSP+GGW +P NWKRNT A +G V + ++SS RERRP+PP +HIPSQ WCKHA EDDP L
Sbjct: 1 MGGGGWYYVPK-VWSPAGGWWNNPANWKRNTGIAGAVVGILAVGLFQVSSSRERRPIPPPWHIPSQYWCKHAVEDDPRL 78
BLAST of mRNA_H-elongata_contig54882.12883.1 vs. uniprot
Match: A0A835YUQ9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUQ9_9STRA) HSP 1 Score: 108 bits (270), Expect = 2.840e-29 Identity = 49/79 (62.03%), Postives = 55/79 (69.62%), Query Frame = 1
Query: 1 MGGGRHFHIPKYVWSPSGGWHASPPNWKRNTAFAMVTIGFAFVAIARLSSERERRPVPPAFHIPSQRWCKHAKEDDPSL 237
MGGGR FH PKYVWSP+GGW P W+RNTA A I +A+ LS + ERRPV P HIPSQ WC HA+EDDPSL
Sbjct: 1 MGGGRKFHYPKYVWSPAGGWWNQPTAWQRNTAVAFGAIALLNLAVFNLSRQLERRPVAPHKHIPSQLWCTHAEEDDPSL 79
BLAST of mRNA_H-elongata_contig54882.12883.1 vs. uniprot
Match: UPI001CF0F221 (uncharacterized protein LOC114956067 n=1 Tax=Acropora millepora TaxID=45264 RepID=UPI001CF0F221) HSP 1 Score: 104 bits (260), Expect = 1.060e-27 Identity = 49/80 (61.25%), Postives = 56/80 (70.00%), Query Frame = 1
Query: 1 MGGGRHFHIPKYVWSPSGGWHASPPNWKRNTAFAMVTIGFAFVAIARLSSERERRPVPPAFHIPSQRWCKHAKEDDPSLP 240
MGG + F PKYVWSP+GGW +P NWKRNTA A I + + +S ERR VPP HIPSQR+CKHAKEDDPSLP
Sbjct: 1 MGGVKKFDYPKYVWSPAGGWWCNPRNWKRNTAIAFGVIFAMCIPVHYISWSLERRYVPPYRHIPSQRFCKHAKEDDPSLP 80
BLAST of mRNA_H-elongata_contig54882.12883.1 vs. uniprot
Match: A0A4D9DFY8_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DFY8_9STRA) HSP 1 Score: 103 bits (257), Expect = 2.230e-27 Identity = 44/79 (55.70%), Postives = 55/79 (69.62%), Query Frame = 1
Query: 1 MGGGRHFHIPKYVWSPSGGWHASPPNWKRNTAFAMVTIGFAFVAIARLSSERERRPVPPAFHIPSQRWCKHAKEDDPSL 237
MGGGR F+ P ++W+PSGGW +P NW+ NT + IG A + LS+ ERRP+ PA+HIPSQ WCKHA EDD SL
Sbjct: 1 MGGGRWFYFPTHIWTPSGGWFPNPKNWRANTLLVLGGIGVAAFSTFSLSASLERRPIAPAWHIPSQSWCKHAAEDDKSL 79
BLAST of mRNA_H-elongata_contig54882.12883.1 vs. uniprot
Match: A0A6S7H709_PARCT (Uncharacterized protein n=2 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7H709_PARCT) HSP 1 Score: 101 bits (252), Expect = 1.330e-26 Identity = 50/79 (63.29%), Postives = 54/79 (68.35%), Query Frame = 1
Query: 1 MGGGRHFHIPKYVWSPSGGWHASPPNWKRNTAFAMVTIGFAFVAIARLSSERERRPVPPAFHIPSQRWCKHAKEDDPSL 237
MGGG+ F PKYVWSPSGGW P NW+RNTA I A V I LS + ERRPV P HI SQR+ KHAKEDDPSL
Sbjct: 1 MGGGKRFDYPKYVWSPSGGWWCEPRNWRRNTAIGFGMIFAACVPICWLSWQLERRPVAPYRHIFSQRFAKHAKEDDPSL 79
BLAST of mRNA_H-elongata_contig54882.12883.1 vs. uniprot
Match: A0A2B4SQG4_STYPI (Uncharacterized protein n=1 Tax=Stylophora pistillata TaxID=50429 RepID=A0A2B4SQG4_STYPI) HSP 1 Score: 101 bits (252), Expect = 1.760e-26 Identity = 47/80 (58.75%), Postives = 56/80 (70.00%), Query Frame = 1
Query: 1 MGGGRHFHIPKYVWSPSGGWHASPPNWKRNTAFAMVTIGFAFVAIARLSSERERRPVPPAFHIPSQRWCKHAKEDDPSLP 240
MGG + F PKYVWSP+GGW +P NWKRNTA + + +A LS RERR VPP HIPSQR+ ++AKEDDPSLP
Sbjct: 1 MGGVKKFDYPKYVWSPTGGWWCNPRNWKRNTAICFAVVLGLQIPVALLSWSRERRYVPPYRHIPSQRFARYAKEDDPSLP 80
BLAST of mRNA_H-elongata_contig54882.12883.1 vs. uniprot
Match: A0A196SL48_BLAHN (Uncharacterized protein n=1 Tax=Blastocystis sp. subtype 1 (strain ATCC 50177 / NandII) TaxID=478820 RepID=A0A196SL48_BLAHN) HSP 1 Score: 100 bits (250), Expect = 2.680e-26 Identity = 44/79 (55.70%), Postives = 51/79 (64.56%), Query Frame = 1
Query: 1 MGGGRHFHIPKYVWSPSGGWHASPPNWKRNTAFAMVTIGFAFVAIARLSSERERRPVPPAFHIPSQRWCKHAKEDDPSL 237
M GG F PKYVWSP+GGW NW+RNT A V + + + S+ ERRP+PP HIPSQ WCKHAKEDDP L
Sbjct: 1 MSGGTPFRYPKYVWSPAGGWWGQNANWRRNTRIAAVVMVALSIPVFIASANMERRPIPPVRHIPSQYWCKHAKEDDPRL 79
BLAST of mRNA_H-elongata_contig54882.12883.1 vs. uniprot
Match: A0A1X7UGN9_AMPQE (Uncharacterized protein n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7UGN9_AMPQE) HSP 1 Score: 100 bits (249), Expect = 4.030e-26 Identity = 42/78 (53.85%), Postives = 57/78 (73.08%), Query Frame = 1
Query: 4 GGGRHFHIPKYVWSPSGGWHASPPNWKRNTAFAMVTIGFAFVAIARLSSERERRPVPPAFHIPSQRWCKHAKEDDPSL 237
GG + F PKYVWSPSGGW +P +W+RNT ++ + + + +A +S++ ERRPV P HIPSQRWCK+A+ DDPSL
Sbjct: 1 GGTKEFPYPKYVWSPSGGWWCNPRHWRRNTNIGLLIVVLSCIPVAYISAKLERRPVAPYRHIPSQRWCKYAETDDPSL 78
BLAST of mRNA_H-elongata_contig54882.12883.1 vs. uniprot
Match: B8LDE7_THAPS (Predicted protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8LDE7_THAPS) HSP 1 Score: 97.4 bits (241), Expect = 5.070e-25 Identity = 43/69 (62.32%), Postives = 50/69 (72.46%), Query Frame = 1
Query: 31 KYVWSPSGGWHASPPNWKRNTAFAMVTIGFAFVAIARLSSERERRPVPPAFHIPSQRWCKHAKEDDPSL 237
K VWSP+GGW +P WKRNT I A I ++S+E+ERRP+PP HIPSQRWCKHAKEDDPSL
Sbjct: 3 KQVWSPAGGWWPTPVAWKRNTVACAFCICVASAMIFKVSAEKERRPIPPFKHIPSQRWCKHAKEDDPSL 71 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig54882.12883.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 18
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig54882.12883.1 >prot_H-elongata_contig54882.12883.1 ID=prot_H-elongata_contig54882.12883.1|Name=mRNA_H-elongata_contig54882.12883.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=81bp MGGGRHFHIPKYVWSPSGGWHASPPNWKRNTAFAMVTIGFAFVAIARLSSback to top mRNA from alignment at H-elongata_contig54882:1672..2297+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig54882.12883.1 ID=mRNA_H-elongata_contig54882.12883.1|Name=mRNA_H-elongata_contig54882.12883.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=626bp|location=Sequence derived from alignment at H-elongata_contig54882:1672..2297+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig54882:1672..2297+ >mRNA_H-elongata_contig54882.12883.1 ID=mRNA_H-elongata_contig54882.12883.1|Name=mRNA_H-elongata_contig54882.12883.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=486bp|location=Sequence derived from alignment at H-elongata_contig54882:1672..2297+ (Himanthalia elongata Himel1 dioecious)back to top |