mRNA_H-elongata_contig54882.12883.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig54882.12883.1
Unique NamemRNA_H-elongata_contig54882.12883.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig54882.12883.1 vs. uniprot
Match: D7G068_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G068_ECTSI)

HSP 1 Score: 151 bits (382), Expect = 1.970e-46
Identity = 64/80 (80.00%), Postives = 72/80 (90.00%), Query Frame = 1
Query:    1 MGGGRHFHIPKYVWSPSGGWHASPPNWKRNTAFAMVTIGFAFVAIARLSSERERRPVPPAFHIPSQRWCKHAKEDDPSLP 240
            MGGGRHFH PK+VWSP+GGW  +PP+WKRNT FA V IG AF+AIAR+SS+RERRP+ PAFHIPSQRWCKHAKEDDPSLP
Sbjct:    1 MGGGRHFHFPKHVWSPAGGWWVNPPHWKRNTGFAFVGIGLAFIAIARISSDRERRPIAPAFHIPSQRWCKHAKEDDPSLP 80          
BLAST of mRNA_H-elongata_contig54882.12883.1 vs. uniprot
Match: A0A1Z5JPC4_FISSO (Uncharacterized protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JPC4_FISSO)

HSP 1 Score: 108 bits (270), Expect = 2.400e-29
Identity = 47/79 (59.49%), Postives = 58/79 (73.42%), Query Frame = 1
Query:    1 MGGGRHFHIPKYVWSPSGGWHASPPNWKRNTAFAMVTIGFAFVAIARLSSERERRPVPPAFHIPSQRWCKHAKEDDPSL 237
            MGGG  +++PK VWSP+GGW  +P NWKRNT  A   +G   V + ++SS RERRP+PP +HIPSQ WCKHA EDDP L
Sbjct:    1 MGGGGWYYVPK-VWSPAGGWWNNPANWKRNTGIAGAVVGILAVGLFQVSSSRERRPIPPPWHIPSQYWCKHAVEDDPRL 78          
BLAST of mRNA_H-elongata_contig54882.12883.1 vs. uniprot
Match: A0A835YUQ9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUQ9_9STRA)

HSP 1 Score: 108 bits (270), Expect = 2.840e-29
Identity = 49/79 (62.03%), Postives = 55/79 (69.62%), Query Frame = 1
Query:    1 MGGGRHFHIPKYVWSPSGGWHASPPNWKRNTAFAMVTIGFAFVAIARLSSERERRPVPPAFHIPSQRWCKHAKEDDPSL 237
            MGGGR FH PKYVWSP+GGW   P  W+RNTA A   I    +A+  LS + ERRPV P  HIPSQ WC HA+EDDPSL
Sbjct:    1 MGGGRKFHYPKYVWSPAGGWWNQPTAWQRNTAVAFGAIALLNLAVFNLSRQLERRPVAPHKHIPSQLWCTHAEEDDPSL 79          
BLAST of mRNA_H-elongata_contig54882.12883.1 vs. uniprot
Match: UPI001CF0F221 (uncharacterized protein LOC114956067 n=1 Tax=Acropora millepora TaxID=45264 RepID=UPI001CF0F221)

HSP 1 Score: 104 bits (260), Expect = 1.060e-27
Identity = 49/80 (61.25%), Postives = 56/80 (70.00%), Query Frame = 1
Query:    1 MGGGRHFHIPKYVWSPSGGWHASPPNWKRNTAFAMVTIGFAFVAIARLSSERERRPVPPAFHIPSQRWCKHAKEDDPSLP 240
            MGG + F  PKYVWSP+GGW  +P NWKRNTA A   I    + +  +S   ERR VPP  HIPSQR+CKHAKEDDPSLP
Sbjct:    1 MGGVKKFDYPKYVWSPAGGWWCNPRNWKRNTAIAFGVIFAMCIPVHYISWSLERRYVPPYRHIPSQRFCKHAKEDDPSLP 80          
BLAST of mRNA_H-elongata_contig54882.12883.1 vs. uniprot
Match: A0A4D9DFY8_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DFY8_9STRA)

HSP 1 Score: 103 bits (257), Expect = 2.230e-27
Identity = 44/79 (55.70%), Postives = 55/79 (69.62%), Query Frame = 1
Query:    1 MGGGRHFHIPKYVWSPSGGWHASPPNWKRNTAFAMVTIGFAFVAIARLSSERERRPVPPAFHIPSQRWCKHAKEDDPSL 237
            MGGGR F+ P ++W+PSGGW  +P NW+ NT   +  IG A  +   LS+  ERRP+ PA+HIPSQ WCKHA EDD SL
Sbjct:    1 MGGGRWFYFPTHIWTPSGGWFPNPKNWRANTLLVLGGIGVAAFSTFSLSASLERRPIAPAWHIPSQSWCKHAAEDDKSL 79          
BLAST of mRNA_H-elongata_contig54882.12883.1 vs. uniprot
Match: A0A6S7H709_PARCT (Uncharacterized protein n=2 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7H709_PARCT)

HSP 1 Score: 101 bits (252), Expect = 1.330e-26
Identity = 50/79 (63.29%), Postives = 54/79 (68.35%), Query Frame = 1
Query:    1 MGGGRHFHIPKYVWSPSGGWHASPPNWKRNTAFAMVTIGFAFVAIARLSSERERRPVPPAFHIPSQRWCKHAKEDDPSL 237
            MGGG+ F  PKYVWSPSGGW   P NW+RNTA     I  A V I  LS + ERRPV P  HI SQR+ KHAKEDDPSL
Sbjct:    1 MGGGKRFDYPKYVWSPSGGWWCEPRNWRRNTAIGFGMIFAACVPICWLSWQLERRPVAPYRHIFSQRFAKHAKEDDPSL 79          
BLAST of mRNA_H-elongata_contig54882.12883.1 vs. uniprot
Match: A0A2B4SQG4_STYPI (Uncharacterized protein n=1 Tax=Stylophora pistillata TaxID=50429 RepID=A0A2B4SQG4_STYPI)

HSP 1 Score: 101 bits (252), Expect = 1.760e-26
Identity = 47/80 (58.75%), Postives = 56/80 (70.00%), Query Frame = 1
Query:    1 MGGGRHFHIPKYVWSPSGGWHASPPNWKRNTAFAMVTIGFAFVAIARLSSERERRPVPPAFHIPSQRWCKHAKEDDPSLP 240
            MGG + F  PKYVWSP+GGW  +P NWKRNTA     +    + +A LS  RERR VPP  HIPSQR+ ++AKEDDPSLP
Sbjct:    1 MGGVKKFDYPKYVWSPTGGWWCNPRNWKRNTAICFAVVLGLQIPVALLSWSRERRYVPPYRHIPSQRFARYAKEDDPSLP 80          
BLAST of mRNA_H-elongata_contig54882.12883.1 vs. uniprot
Match: A0A196SL48_BLAHN (Uncharacterized protein n=1 Tax=Blastocystis sp. subtype 1 (strain ATCC 50177 / NandII) TaxID=478820 RepID=A0A196SL48_BLAHN)

HSP 1 Score: 100 bits (250), Expect = 2.680e-26
Identity = 44/79 (55.70%), Postives = 51/79 (64.56%), Query Frame = 1
Query:    1 MGGGRHFHIPKYVWSPSGGWHASPPNWKRNTAFAMVTIGFAFVAIARLSSERERRPVPPAFHIPSQRWCKHAKEDDPSL 237
            M GG  F  PKYVWSP+GGW     NW+RNT  A V +    + +   S+  ERRP+PP  HIPSQ WCKHAKEDDP L
Sbjct:    1 MSGGTPFRYPKYVWSPAGGWWGQNANWRRNTRIAAVVMVALSIPVFIASANMERRPIPPVRHIPSQYWCKHAKEDDPRL 79          
BLAST of mRNA_H-elongata_contig54882.12883.1 vs. uniprot
Match: A0A1X7UGN9_AMPQE (Uncharacterized protein n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7UGN9_AMPQE)

HSP 1 Score: 100 bits (249), Expect = 4.030e-26
Identity = 42/78 (53.85%), Postives = 57/78 (73.08%), Query Frame = 1
Query:    4 GGGRHFHIPKYVWSPSGGWHASPPNWKRNTAFAMVTIGFAFVAIARLSSERERRPVPPAFHIPSQRWCKHAKEDDPSL 237
            GG + F  PKYVWSPSGGW  +P +W+RNT   ++ +  + + +A +S++ ERRPV P  HIPSQRWCK+A+ DDPSL
Sbjct:    1 GGTKEFPYPKYVWSPSGGWWCNPRHWRRNTNIGLLIVVLSCIPVAYISAKLERRPVAPYRHIPSQRWCKYAETDDPSL 78          
BLAST of mRNA_H-elongata_contig54882.12883.1 vs. uniprot
Match: B8LDE7_THAPS (Predicted protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8LDE7_THAPS)

HSP 1 Score: 97.4 bits (241), Expect = 5.070e-25
Identity = 43/69 (62.32%), Postives = 50/69 (72.46%), Query Frame = 1
Query:   31 KYVWSPSGGWHASPPNWKRNTAFAMVTIGFAFVAIARLSSERERRPVPPAFHIPSQRWCKHAKEDDPSL 237
            K VWSP+GGW  +P  WKRNT      I  A   I ++S+E+ERRP+PP  HIPSQRWCKHAKEDDPSL
Sbjct:    3 KQVWSPAGGWWPTPVAWKRNTVACAFCICVASAMIFKVSAEKERRPIPPFKHIPSQRWCKHAKEDDPSL 71          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig54882.12883.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
D7G068_ECTSI1.970e-4680.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A1Z5JPC4_FISSO2.400e-2959.49Uncharacterized protein n=1 Tax=Fistulifera solari... [more]
A0A835YUQ9_9STRA2.840e-2962.03Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
UPI001CF0F2211.060e-2761.25uncharacterized protein LOC114956067 n=1 Tax=Acrop... [more]
A0A4D9DFY8_9STRA2.230e-2755.70Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A6S7H709_PARCT1.330e-2663.29Uncharacterized protein n=2 Tax=Paramuricea clavat... [more]
A0A2B4SQG4_STYPI1.760e-2658.75Uncharacterized protein n=1 Tax=Stylophora pistill... [more]
A0A196SL48_BLAHN2.680e-2655.70Uncharacterized protein n=1 Tax=Blastocystis sp. s... [more]
A0A1X7UGN9_AMPQE4.030e-2653.85Uncharacterized protein n=1 Tax=Amphimedon queensl... [more]
B8LDE7_THAPS5.070e-2562.32Predicted protein (Fragment) n=1 Tax=Thalassiosira... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig54882contigH-elongata_contig54882:1672..2297 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score104.4
Seed ortholog evalue2.6e-20
Seed eggNOG ortholog400682.PAC_15716111
EggNOG OGs2CGJ1@1,2S6YK@2759,3A92W@33154,3C3J4@33208
Best tax levelMetazoa
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-05_004010.1
Exons2
Model size243
Cds size243
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930894.4340725-CDS-H-elongata_contig54882:1671..18301622930894.4340725-CDS-H-elongata_contig54882:1671..1830Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54882 1672..1830 +
1691679615.0548286-CDS-H-elongata_contig54882:1671..18301691679615.0548286-CDS-H-elongata_contig54882:1671..1830Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54882 1672..1830 +
1622930894.4494789-CDS-H-elongata_contig54882:2213..22971622930894.4494789-CDS-H-elongata_contig54882:2213..2297Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54882 2214..2297 +
1691679615.070436-CDS-H-elongata_contig54882:2213..22971691679615.070436-CDS-H-elongata_contig54882:2213..2297Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54882 2214..2297 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig54882.12883.1prot_H-elongata_contig54882.12883.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig54882 1672..2297 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig54882.12883.1

>prot_H-elongata_contig54882.12883.1 ID=prot_H-elongata_contig54882.12883.1|Name=mRNA_H-elongata_contig54882.12883.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=81bp
MGGGRHFHIPKYVWSPSGGWHASPPNWKRNTAFAMVTIGFAFVAIARLSS
ERERRPVPPAFHIPSQRWCKHAKEDDPSLP*
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mRNA from alignment at H-elongata_contig54882:1672..2297+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig54882.12883.1 ID=mRNA_H-elongata_contig54882.12883.1|Name=mRNA_H-elongata_contig54882.12883.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=626bp|location=Sequence derived from alignment at H-elongata_contig54882:1672..2297+ (Himanthalia elongata Himel1 dioecious)
ATGGGGGGCGGACGCCACTTTCACATCCCGAAGTACGTGTGGTCTCCCTC GGGGGGCTGGCACGCAAGTCCGCCTAACTGGAAACGGAACACCGCTTTTG CCATGGTCACTATCGGCTTCGCTTTTGTAGCGATCGCCCGGCTCTCCTCG GAACGAGAGGTGAGCGCCCCCCCCCGCCCCGTTCTTTCATTGGTCGGAAG TTAAACAACAGTCGAATCGATTATGGTTATCTACAGCCAACGGAAGACCT CCGAGTATAATCCGTTTTTCAGCGCAGGTTAGGTGTTTCAAGGCCAAAAT ATGTCAATAAACTCCTATAGTAAGGGTATTTCTCGATGTGCCGTTTAGAC AGGACTCTTCAAGCGAAGGCGCCGCATTTTGGGGCCGAAACAAAAATGCG CGGTATAGACACCCCATCGCTGCTGACTGGGCTACGGTCTTAGCCTCTTC CCAACTTCTCGTCAAGCCTTCGAGCCCCGCGCGTTTTTCCCATTGCGTGC CCTTTCTCCCTTAACCTCGCTTGGCTCTCGCAACTTTCGCAGCGTCGGCC AGTTCCTCCGGCCTTCCACATCCCTTCGCAGAGGTGGTGCAAGCACGCCA AGGAGGACGATCCATCACTTCCGTAG
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Coding sequence (CDS) from alignment at H-elongata_contig54882:1672..2297+

>mRNA_H-elongata_contig54882.12883.1 ID=mRNA_H-elongata_contig54882.12883.1|Name=mRNA_H-elongata_contig54882.12883.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=486bp|location=Sequence derived from alignment at H-elongata_contig54882:1672..2297+ (Himanthalia elongata Himel1 dioecious)
ATGGGGGGCGGACGCCACTTTCACATCCCGAAGTACGTGTGGTCTCCCTC
GGGGGGCTGGCACGCAAGTCCGCCTAACTGGAAACGGAACACCGCTTTTG
CCATGGTCACTATCGGCTTCGCTTTTGTAGCGATCGCCCGGCTCTCCTCG
GAACGAGAGATGGGGGGCGGACGCCACTTTCACATCCCGAAGTACGTGTG
GTCTCCCTCGGGGGGCTGGCACGCAAGTCCGCCTAACTGGAAACGGAACA
CCGCTTTTGCCATGGTCACTATCGGCTTCGCTTTTGTAGCGATCGCCCGG
CTCTCCTCGGAACGAGAGCGTCGGCCAGTTCCTCCGGCCTTCCACATCCC
TTCGCAGAGGTGGTGCAAGCACGCCAAGGAGGACGATCCATCACTTCCGT
AGCGTCGGCCAGTTCCTCCGGCCTTCCACATCCCTTCGCAGAGGTGGTGC
AAGCACGCCAAGGAGGACGATCCATCACTTCCGTAG
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