mRNA_H-elongata_contig54722.12865.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig54722.12865.1
Unique NamemRNA_H-elongata_contig54722.12865.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig54722.12865.1 vs. uniprot
Match: D8LDP4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LDP4_ECTSI)

HSP 1 Score: 171 bits (433), Expect = 7.630e-49
Identity = 82/96 (85.42%), Postives = 89/96 (92.71%), Query Frame = 1
Query:    7 AASAVSTSPVMLDTYWEGKAPPSQVLGPALAGAPSGGLGIISLVAFAAGTYCIHETNILHTVTPDTIQPLYVAGSVLVPISWGLHVASWIQKQNGK 294
            A S VS +PVMLDTYWEGKAPPS+VLGPALA APS GLG++SL AFAAGTYCIHETNILHTV+PD IQPLYVAG++LVPISWGLHVASWIQKQNGK
Sbjct:   37 ATSKVSATPVMLDTYWEGKAPPSEVLGPALAKAPSAGLGVVSLAAFAAGTYCIHETNILHTVSPDNIQPLYVAGALLVPISWGLHVASWIQKQNGK 132          
BLAST of mRNA_H-elongata_contig54722.12865.1 vs. uniprot
Match: A0A836C871_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C871_9STRA)

HSP 1 Score: 125 bits (314), Expect = 2.190e-31
Identity = 55/84 (65.48%), Postives = 67/84 (79.76%), Query Frame = 1
Query:   43 DTYWEGKAPPSQVLGPALAGAPSGGLGIISLVAFAAGTYCIHETNILHTVTPDTIQPLYVAGSVLVPISWGLHVASWIQKQNGK 294
            DTYWEGKAPPS+VLGP ++  PS  LG+ISL+    GTY +HE+NI HT+T DTI P Y+ GS+L P++WG HVASWIQKQNGK
Sbjct:   43 DTYWEGKAPPSKVLGPVVSQIPSPALGVISLICLGVGTYSVHESNIFHTLTADTINPGYIIGSLLTPVAWGTHVASWIQKQNGK 126          
BLAST of mRNA_H-elongata_contig54722.12865.1 vs. uniprot
Match: A0A7S1U023_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U023_9STRA)

HSP 1 Score: 120 bits (301), Expect = 1.650e-29
Identity = 53/82 (64.63%), Postives = 67/82 (81.71%), Query Frame = 1
Query:   46 TYWEGKAPPSQVLGPALAGAPSGGLGIISLVAFAAGTYCIHETNILHTVTPDTIQPLYVAGSVLVPISWGLHVASWIQKQNG 291
            TYWEGK PPS VLGP L+  PSG LG +S+++  AGTY +HE+NILHT+  DT+ P++V GS+LVPISWGLHVA+WI K+NG
Sbjct:   43 TYWEGKVPPSTVLGPVLSKTPSGLLGPVSIISLLAGTYSVHESNILHTLNADTVYPVFVIGSLLVPISWGLHVAAWINKENG 124          
BLAST of mRNA_H-elongata_contig54722.12865.1 vs. uniprot
Match: A0A4D9DAY0_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DAY0_9STRA)

HSP 1 Score: 117 bits (294), Expect = 1.970e-28
Identity = 56/83 (67.47%), Postives = 63/83 (75.90%), Query Frame = 1
Query:   46 TYWEGKAPPSQVLGPALAGAPSGGLGIISLVAFAAGTYCIHETNILHTVTPDTIQPLYVAGSVLVPISWGLHVASWIQKQNGK 294
            TYWEGKAP S VLGP LA  PSG LG  SLVA   G YC+HE+NI + +T D+I P YV GS L PISWG+HVA+WIQKQNGK
Sbjct:   48 TYWEGKAPSSAVLGPFLAKVPSGVLGPASLVALMVGAYCVHESNIFNILTVDSINPAYVLGSFLTPISWGMHVAAWIQKQNGK 130          
BLAST of mRNA_H-elongata_contig54722.12865.1 vs. uniprot
Match: A0A7S2S169_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S169_9STRA)

HSP 1 Score: 101 bits (251), Expect = 4.740e-22
Identity = 51/84 (60.71%), Postives = 61/84 (72.62%), Query Frame = 1
Query:   43 DTYWEGKAPPSQVLGPALAGAPSGGLGIISLVAFAAGTYCIHETNILHTVTPDTIQPLYVAGSVLVPISWGLHVASWIQKQNGK 294
            DTYWEGKAPPS VLGP L+   SG LG+ SL   A G+YC  + N+     PD + PL+V G+ L+PISWGLHVASWIQK+NGK
Sbjct:   68 DTYWEGKAPPSTVLGPVLSKTNSGLLGLTSLAFLAVGSYCAVQNNLFSL--PD-VNPLFVLGANLLPISWGLHVASWIQKENGK 148          
BLAST of mRNA_H-elongata_contig54722.12865.1 vs. uniprot
Match: M2Y646_GALSU (Uncharacterized protein n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2Y646_GALSU)

HSP 1 Score: 95.1 bits (235), Expect = 5.740e-20
Identity = 48/87 (55.17%), Postives = 58/87 (66.67%), Query Frame = 1
Query:   34 VMLDTYWEGKAPPSQVLGPALAGAPSGGLGIISLVAFAAGTYCIHETNILHTVTPDTIQPLYVAGSVLVPISWGLHVASWIQKQNGK 294
            V  DT+W GK PPS VLG      PS    I S+V    G+YC++E+N+L  +T  TI PLYV GS+LVP SWGLHVA WIQ +NGK
Sbjct:   48 VAKDTFWTGKVPPSTVLGIGEK-VPSAAYIISSVVCLLVGSYCVYESNLLSPLTVTTINPLYVLGSLLVPYSWGLHVAGWIQLKNGK 133          
BLAST of mRNA_H-elongata_contig54722.12865.1 vs. uniprot
Match: A0A1X6NZL8_PORUM (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NZL8_PORUM)

HSP 1 Score: 94.7 bits (234), Expect = 8.160e-20
Identity = 45/85 (52.94%), Postives = 61/85 (71.76%), Query Frame = 1
Query:   40 LDTYWEGKAPPSQVLGPALAGAPSGGLGIISLVAFAAGTYCIHETNILHTVTPDTIQPLYVAGSVLVPISWGLHVASWIQKQNGK 294
            +DTYWEGKAPPS VLG      PSG   + S+++ A G+Y ++++N+   +TP T++  Y+  S+L PISWGLHVASWIQKQN K
Sbjct:   51 MDTYWEGKAPPSTVLGLGK-NVPSGLYLLASVLSLALGSYGVYKSNLASPLTPSTVEAQYILASLLAPISWGLHVASWIQKQNNK 134          
BLAST of mRNA_H-elongata_contig54722.12865.1 vs. uniprot
Match: A0A7S2DS21_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DS21_9STRA)

HSP 1 Score: 94.0 bits (232), Expect = 1.940e-19
Identity = 50/86 (58.14%), Postives = 61/86 (70.93%), Query Frame = 1
Query:   37 MLDTYWEGKAPPSQVLGPALAGAPSGGLGIISLVAFAAGTYCIHETNILHTVTPDTIQPLYVAGSVLVPISWGLHVASWIQKQNGK 294
            M DTYWEG  PPS VLGP L+ + SG LGI SL+AF+ G + +  + I  T     I PL+ A +VL+PISWGLHVASWIQK+NGK
Sbjct:   58 MEDTYWEGNFPPSNVLGPLLSKSSSGVLGIGSLLAFSGGAFGL-SSQIALTSQQLQISPLFCAMTVLIPISWGLHVASWIQKENGK 142          
BLAST of mRNA_H-elongata_contig54722.12865.1 vs. uniprot
Match: A0A2V3IUA9_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IUA9_9FLOR)

HSP 1 Score: 90.1 bits (222), Expect = 3.260e-18
Identity = 41/95 (43.16%), Postives = 64/95 (67.37%), Query Frame = 1
Query:   10 ASAVSTSPVMLDTYWEGKAPPSQVLGPALAGAPSGGLGIISLVAFAAGTYCIHETNILHTVTPDTIQPLYVAGSVLVPISWGLHVASWIQKQNGK 294
            AS+   +PV + TYWEG+ PPS++LG      PS      S +A   G YC++++N+++ ++ +++ P ++ GS+LVPISWGLHVA WIQ +N K
Sbjct:   34 ASSRRVAPVRMSTYWEGEYPPSEILGLGK-DVPSSLFVFSSAIALLLGCYCVYQSNLINPLSSESVNPQFIVGSLLVPISWGLHVAGWIQGKNNK 127          
BLAST of mRNA_H-elongata_contig54722.12865.1 vs. uniprot
Match: A0A7S1XBA2_9RHOD (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1XBA2_9RHOD)

HSP 1 Score: 87.8 bits (216), Expect = 1.960e-17
Identity = 43/85 (50.59%), Postives = 57/85 (67.06%), Query Frame = 1
Query:   40 LDTYWEGKAPPSQVLGPALAGAPSGGLGIISLVAFAAGTYCIHETNILHTVTPDTIQPLYVAGSVLVPISWGLHVASWIQKQNGK 294
            +DT W+GK PPS VLG      PS      S VA   G YC  ++N++  +TP+T++P ++ GS+LVPISWGLHVA WIQ+QN K
Sbjct:   39 VDTTWDGKFPPSTVLGFGK-DVPSPFYIFSSFVALVVGGYCCTQSNLISPLTPETVRPDFILGSLLVPISWGLHVAGWIQRQNNK 122          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig54722.12865.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 20
Match NameE-valueIdentityDescription
D8LDP4_ECTSI7.630e-4985.42Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836C871_9STRA2.190e-3165.48Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S1U023_9STRA1.650e-2964.63Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A4D9DAY0_9STRA1.970e-2867.47Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A7S2S169_9STRA4.740e-2260.71Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
M2Y646_GALSU5.740e-2055.17Uncharacterized protein n=1 Tax=Galdieria sulphura... [more]
A0A1X6NZL8_PORUM8.160e-2052.94Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
A0A7S2DS21_9STRA1.940e-1958.14Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A2V3IUA9_9FLOR3.260e-1843.16Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A7S1XBA2_9RHOD1.960e-1750.59Hypothetical protein n=1 Tax=Compsopogon caeruleus... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig54722contigH-elongata_contig54722:1737..2950 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score168.3
Seed ortholog evalue1.6e-39
Seed eggNOG ortholog2880.D8LDP4
EggNOG OGs2E1FA@1,2S8SH@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-19_001440.1
Exons1
Model size1214
Cds size261
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig54722.12865.1prot_H-elongata_contig54722.12865.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig54722 1773..2033 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930892.0467813-UTR-H-elongata_contig54722:1736..17721622930892.0467813-UTR-H-elongata_contig54722:1736..1772Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig54722 1737..1772 +
1691679614.0816782-UTR-H-elongata_contig54722:1736..17721691679614.0816782-UTR-H-elongata_contig54722:1736..1772Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig54722 1737..1772 +
1622930892.1318326-UTR-H-elongata_contig54722:2033..29501622930892.1318326-UTR-H-elongata_contig54722:2033..2950Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig54722 2034..2950 +
1691679614.112641-UTR-H-elongata_contig54722:2033..29501691679614.112641-UTR-H-elongata_contig54722:2033..2950Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig54722 2034..2950 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930892.1123586-CDS-H-elongata_contig54722:1772..20331622930892.1123586-CDS-H-elongata_contig54722:1772..2033Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54722 1773..2033 +
1691679614.0947242-CDS-H-elongata_contig54722:1772..20331691679614.0947242-CDS-H-elongata_contig54722:1772..2033Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54722 1773..2033 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig54722.12865.1

>prot_H-elongata_contig54722.12865.1 ID=prot_H-elongata_contig54722.12865.1|Name=mRNA_H-elongata_contig54722.12865.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=87bp
MLDTYWEGKAPPSQVLGPALAGAPSGGLGIISLVAFAAGTYCIHETNILH
TVTPDTIQPLYVAGSVLVPISWGLHVASWIQKQNGK*
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mRNA from alignment at H-elongata_contig54722:1737..2950+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig54722.12865.1 ID=mRNA_H-elongata_contig54722.12865.1|Name=mRNA_H-elongata_contig54722.12865.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1214bp|location=Sequence derived from alignment at H-elongata_contig54722:1737..2950+ (Himanthalia elongata Himel1 dioecious)
AAAGCAGCGGCGTCCGCGGTGTCCACCAGCCCGGTCATGTTGGACACCTA CTGGGAGGGCAAGGCACCGCCGTCTCAAGTGCTCGGCCCCGCGCTCGCTG GGGCGCCCTCCGGTGGGCTCGGCATCATCTCGCTCGTGGCCTTCGCGGCG GGTACCTACTGCATCCATGAAACGAATATATTGCACACCGTGACCCCGGA CACCATCCAGCCCCTATACGTGGCTGGCTCCGTGCTCGTGCCGATCTCAT GGGGGCTCCACGTGGCTTCGTGGATCCAGAAGCAGAATGGGAAGTAAACA CGTTGTAGAAGAAGTTGAGTTTTGTTCTCAAAAAGGAAAGAGTCTCTAGA AGGGGTTTTAGGGCGAGCTCCCTTCGGGTTGGAATTTATCCTCGTTCCCT TGGCCAAGGGGAGTATGTTTTGATTCGATACCTTCGGGTGTTGGCACTGG GGTGGTTTGAGCCAACTTCTTGTTGGACACGATGTATTATGATTCGTTGG CGACAACGCGCCTTAGGTATGTACTAACGTTTTAGCTTCAGGTCCGCTAG AGAGCGCAGGGGGGATACGTCGGCCGCGTACGATCCGGATATTTGGTTTT CCTGCCCCCGCCTACATTATGTAGTTCGCACAAACGTTGTTGCAACTGTT TCAATCTTTGTATTTCGTGACGCGGAATATGTGCCAGGATTGTGCGTCTC GTGATCGCATAGAAACGGAGCCTTATGCTCGCGCTCTCTCCTTTCCAAAT ATTCAAGGCGTCTTCCGGCATCGCTTCTCGCCTAACCACAAACCAGTTCC TTCCTTCGTCTCTCATGACGCTCGGAAATTGGATGATCGCTCGTGACGAC TGCACCTCCTCACGGTTTTAAGAAGGCGTGGGAGTTGTTCGGAGGGTTTA AAATGAGTTCGTATATATTTTTTAAGAGAAATATCGAAAATAGATCACGG TACCGCTTGAAGTCATGATAAAGCGGTAACCCAGGCGAGCAGCGGTGTGT GAGAACCATCGATTCAGCCCAAAAGATACCACGCCAACGCAAGGTTTGTA TTTCAAGGCGGCGTCGGAATATACGAACGAGGAGAATCAAGCAAGTGAAG TAAACCTGGACAAATAAAACACGACGTTTACACCCAGTAGTGCTCTCGAT TCGTAATGAGTGAGGAGATCTCAACCCAAATCGCAAAATTTGCGATATAC TAGGATATCGACCG
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Coding sequence (CDS) from alignment at H-elongata_contig54722:1737..2950+

>mRNA_H-elongata_contig54722.12865.1 ID=mRNA_H-elongata_contig54722.12865.1|Name=mRNA_H-elongata_contig54722.12865.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=522bp|location=Sequence derived from alignment at H-elongata_contig54722:1737..2950+ (Himanthalia elongata Himel1 dioecious)
ATGTTGGACACCTACTGGGAGGGCAAGGCACCGCCGTCTCAAGTGCTCGG
CCCCGCGCTCGCTGGGGCGCCCTCCGGTGGGCTCGGCATCATCTCGCTCG
TGGCCTTCGCGGCGGGTACCTACTGCATCCATGAAACGAATATATTGCAC
ACCGTGACCCCGGACACCATCCAGCCCCTATACGTGGCTGGCTCCGTGCT
CGTGCCGATCTCATGGGGGCTCCACGTGGCTTCGTGGATCCAGAAGCAGA
ATGGGAAGTAAATGTTGGACACCTACTGGGAGGGCAAGGCACCGCCGTCT
CAAGTGCTCGGCCCCGCGCTCGCTGGGGCGCCCTCCGGTGGGCTCGGCAT
CATCTCGCTCGTGGCCTTCGCGGCGGGTACCTACTGCATCCATGAAACGA
ATATATTGCACACCGTGACCCCGGACACCATCCAGCCCCTATACGTGGCT
GGCTCCGTGCTCGTGCCGATCTCATGGGGGCTCCACGTGGCTTCGTGGAT
CCAGAAGCAGAATGGGAAGTAA
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