mRNA_H-elongata_contig54722.12865.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig54722.12865.1 vs. uniprot
Match: D8LDP4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LDP4_ECTSI) HSP 1 Score: 171 bits (433), Expect = 7.630e-49 Identity = 82/96 (85.42%), Postives = 89/96 (92.71%), Query Frame = 1
Query: 7 AASAVSTSPVMLDTYWEGKAPPSQVLGPALAGAPSGGLGIISLVAFAAGTYCIHETNILHTVTPDTIQPLYVAGSVLVPISWGLHVASWIQKQNGK 294
A S VS +PVMLDTYWEGKAPPS+VLGPALA APS GLG++SL AFAAGTYCIHETNILHTV+PD IQPLYVAG++LVPISWGLHVASWIQKQNGK
Sbjct: 37 ATSKVSATPVMLDTYWEGKAPPSEVLGPALAKAPSAGLGVVSLAAFAAGTYCIHETNILHTVSPDNIQPLYVAGALLVPISWGLHVASWIQKQNGK 132
BLAST of mRNA_H-elongata_contig54722.12865.1 vs. uniprot
Match: A0A836C871_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C871_9STRA) HSP 1 Score: 125 bits (314), Expect = 2.190e-31 Identity = 55/84 (65.48%), Postives = 67/84 (79.76%), Query Frame = 1
Query: 43 DTYWEGKAPPSQVLGPALAGAPSGGLGIISLVAFAAGTYCIHETNILHTVTPDTIQPLYVAGSVLVPISWGLHVASWIQKQNGK 294
DTYWEGKAPPS+VLGP ++ PS LG+ISL+ GTY +HE+NI HT+T DTI P Y+ GS+L P++WG HVASWIQKQNGK
Sbjct: 43 DTYWEGKAPPSKVLGPVVSQIPSPALGVISLICLGVGTYSVHESNIFHTLTADTINPGYIIGSLLTPVAWGTHVASWIQKQNGK 126
BLAST of mRNA_H-elongata_contig54722.12865.1 vs. uniprot
Match: A0A7S1U023_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U023_9STRA) HSP 1 Score: 120 bits (301), Expect = 1.650e-29 Identity = 53/82 (64.63%), Postives = 67/82 (81.71%), Query Frame = 1
Query: 46 TYWEGKAPPSQVLGPALAGAPSGGLGIISLVAFAAGTYCIHETNILHTVTPDTIQPLYVAGSVLVPISWGLHVASWIQKQNG 291
TYWEGK PPS VLGP L+ PSG LG +S+++ AGTY +HE+NILHT+ DT+ P++V GS+LVPISWGLHVA+WI K+NG
Sbjct: 43 TYWEGKVPPSTVLGPVLSKTPSGLLGPVSIISLLAGTYSVHESNILHTLNADTVYPVFVIGSLLVPISWGLHVAAWINKENG 124
BLAST of mRNA_H-elongata_contig54722.12865.1 vs. uniprot
Match: A0A4D9DAY0_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DAY0_9STRA) HSP 1 Score: 117 bits (294), Expect = 1.970e-28 Identity = 56/83 (67.47%), Postives = 63/83 (75.90%), Query Frame = 1
Query: 46 TYWEGKAPPSQVLGPALAGAPSGGLGIISLVAFAAGTYCIHETNILHTVTPDTIQPLYVAGSVLVPISWGLHVASWIQKQNGK 294
TYWEGKAP S VLGP LA PSG LG SLVA G YC+HE+NI + +T D+I P YV GS L PISWG+HVA+WIQKQNGK
Sbjct: 48 TYWEGKAPSSAVLGPFLAKVPSGVLGPASLVALMVGAYCVHESNIFNILTVDSINPAYVLGSFLTPISWGMHVAAWIQKQNGK 130
BLAST of mRNA_H-elongata_contig54722.12865.1 vs. uniprot
Match: A0A7S2S169_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S169_9STRA) HSP 1 Score: 101 bits (251), Expect = 4.740e-22 Identity = 51/84 (60.71%), Postives = 61/84 (72.62%), Query Frame = 1
Query: 43 DTYWEGKAPPSQVLGPALAGAPSGGLGIISLVAFAAGTYCIHETNILHTVTPDTIQPLYVAGSVLVPISWGLHVASWIQKQNGK 294
DTYWEGKAPPS VLGP L+ SG LG+ SL A G+YC + N+ PD + PL+V G+ L+PISWGLHVASWIQK+NGK
Sbjct: 68 DTYWEGKAPPSTVLGPVLSKTNSGLLGLTSLAFLAVGSYCAVQNNLFSL--PD-VNPLFVLGANLLPISWGLHVASWIQKENGK 148
BLAST of mRNA_H-elongata_contig54722.12865.1 vs. uniprot
Match: M2Y646_GALSU (Uncharacterized protein n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2Y646_GALSU) HSP 1 Score: 95.1 bits (235), Expect = 5.740e-20 Identity = 48/87 (55.17%), Postives = 58/87 (66.67%), Query Frame = 1
Query: 34 VMLDTYWEGKAPPSQVLGPALAGAPSGGLGIISLVAFAAGTYCIHETNILHTVTPDTIQPLYVAGSVLVPISWGLHVASWIQKQNGK 294
V DT+W GK PPS VLG PS I S+V G+YC++E+N+L +T TI PLYV GS+LVP SWGLHVA WIQ +NGK
Sbjct: 48 VAKDTFWTGKVPPSTVLGIGEK-VPSAAYIISSVVCLLVGSYCVYESNLLSPLTVTTINPLYVLGSLLVPYSWGLHVAGWIQLKNGK 133
BLAST of mRNA_H-elongata_contig54722.12865.1 vs. uniprot
Match: A0A1X6NZL8_PORUM (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NZL8_PORUM) HSP 1 Score: 94.7 bits (234), Expect = 8.160e-20 Identity = 45/85 (52.94%), Postives = 61/85 (71.76%), Query Frame = 1
Query: 40 LDTYWEGKAPPSQVLGPALAGAPSGGLGIISLVAFAAGTYCIHETNILHTVTPDTIQPLYVAGSVLVPISWGLHVASWIQKQNGK 294
+DTYWEGKAPPS VLG PSG + S+++ A G+Y ++++N+ +TP T++ Y+ S+L PISWGLHVASWIQKQN K
Sbjct: 51 MDTYWEGKAPPSTVLGLGK-NVPSGLYLLASVLSLALGSYGVYKSNLASPLTPSTVEAQYILASLLAPISWGLHVASWIQKQNNK 134
BLAST of mRNA_H-elongata_contig54722.12865.1 vs. uniprot
Match: A0A7S2DS21_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DS21_9STRA) HSP 1 Score: 94.0 bits (232), Expect = 1.940e-19 Identity = 50/86 (58.14%), Postives = 61/86 (70.93%), Query Frame = 1
Query: 37 MLDTYWEGKAPPSQVLGPALAGAPSGGLGIISLVAFAAGTYCIHETNILHTVTPDTIQPLYVAGSVLVPISWGLHVASWIQKQNGK 294
M DTYWEG PPS VLGP L+ + SG LGI SL+AF+ G + + + I T I PL+ A +VL+PISWGLHVASWIQK+NGK
Sbjct: 58 MEDTYWEGNFPPSNVLGPLLSKSSSGVLGIGSLLAFSGGAFGL-SSQIALTSQQLQISPLFCAMTVLIPISWGLHVASWIQKENGK 142
BLAST of mRNA_H-elongata_contig54722.12865.1 vs. uniprot
Match: A0A2V3IUA9_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IUA9_9FLOR) HSP 1 Score: 90.1 bits (222), Expect = 3.260e-18 Identity = 41/95 (43.16%), Postives = 64/95 (67.37%), Query Frame = 1
Query: 10 ASAVSTSPVMLDTYWEGKAPPSQVLGPALAGAPSGGLGIISLVAFAAGTYCIHETNILHTVTPDTIQPLYVAGSVLVPISWGLHVASWIQKQNGK 294
AS+ +PV + TYWEG+ PPS++LG PS S +A G YC++++N+++ ++ +++ P ++ GS+LVPISWGLHVA WIQ +N K
Sbjct: 34 ASSRRVAPVRMSTYWEGEYPPSEILGLGK-DVPSSLFVFSSAIALLLGCYCVYQSNLINPLSSESVNPQFIVGSLLVPISWGLHVAGWIQGKNNK 127
BLAST of mRNA_H-elongata_contig54722.12865.1 vs. uniprot
Match: A0A7S1XBA2_9RHOD (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1XBA2_9RHOD) HSP 1 Score: 87.8 bits (216), Expect = 1.960e-17 Identity = 43/85 (50.59%), Postives = 57/85 (67.06%), Query Frame = 1
Query: 40 LDTYWEGKAPPSQVLGPALAGAPSGGLGIISLVAFAAGTYCIHETNILHTVTPDTIQPLYVAGSVLVPISWGLHVASWIQKQNGK 294
+DT W+GK PPS VLG PS S VA G YC ++N++ +TP+T++P ++ GS+LVPISWGLHVA WIQ+QN K
Sbjct: 39 VDTTWDGKFPPSTVLGFGK-DVPSPFYIFSSFVALVVGGYCCTQSNLISPLTPETVRPDFILGSLLVPISWGLHVAGWIQRQNNK 122 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig54722.12865.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 20
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig54722.12865.1 >prot_H-elongata_contig54722.12865.1 ID=prot_H-elongata_contig54722.12865.1|Name=mRNA_H-elongata_contig54722.12865.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=87bp MLDTYWEGKAPPSQVLGPALAGAPSGGLGIISLVAFAAGTYCIHETNILHback to top mRNA from alignment at H-elongata_contig54722:1737..2950+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig54722.12865.1 ID=mRNA_H-elongata_contig54722.12865.1|Name=mRNA_H-elongata_contig54722.12865.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1214bp|location=Sequence derived from alignment at H-elongata_contig54722:1737..2950+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig54722:1737..2950+ >mRNA_H-elongata_contig54722.12865.1 ID=mRNA_H-elongata_contig54722.12865.1|Name=mRNA_H-elongata_contig54722.12865.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=522bp|location=Sequence derived from alignment at H-elongata_contig54722:1737..2950+ (Himanthalia elongata Himel1 dioecious)back to top |