mRNA_H-elongata_contig542.12790.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig542.12790.1 vs. uniprot
Match: D7FHT3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHT3_ECTSI) HSP 1 Score: 409 bits (1050), Expect = 8.950e-131 Identity = 231/375 (61.60%), Postives = 298/375 (79.47%), Query Frame = 1
Query: 1 AEGYEG--DLESAIAASRQRAEAKSVKELQMELDAVRLRLLRRSQIIDAIRKAYVRDVVMVKNELMRKSTVTEEEYFAQGGPGTDITDAVPSLDMRPILALFSPDDSFLRVESCNACGGHLEIVSRETKRVAQLVKRISALAEQQEKGNQETMKMRAELTLTRHRAKELEDRNIINRDTLVAKLEQTQRRCAEEMAVLKEKANLAESSWRAKLARKDHDMEMLPMLRREVKLTHNKLAEEKTAREEDLYQRDGEITTLKAKVKKMEFSADASAGVLLRAQNECDDLKRHLNAEKAEHTAIKELFDEEQSRYDRCRRSLETTRERLADLRVRHSELRAEVEAADEAAQGEAEEANDALAAARLEIERLRGLLGTSN 1119
AEG+EG L++ +AASRQRAEAKS +ELQ+EL+AVRLRLLRRSQIIDA+R AYVRDVV+VKNELMRKS +T+EEY AQGGPGTDITDA+PSLDMRP+LALFSP+D+FLR+ESC CGGHLEIV++ETKRVA+L KRIS L E + +E ++RAEL LTRHR KEL++RNI+NRDTLVAKLEQTQR C ++ LKE A ++ +W AK+ARKD + ++P L +E +L +E ++RE+D +++D EI TLKAKV +E SA+A A +L A+++ +D +R LN EKAEH A L EE+ +Y+RCR LET++E LADL R +E+RAEVEA+ E A+ EA EA+DALAAA++EI+RLR +LGTS+
Sbjct: 17 AEGHEGGSSLQAVLAASRQRAEAKSAQELQLELEAVRLRLLRRSQIIDALRSAYVRDVVIVKNELMRKSAMTDEEYVAQGGPGTDITDAIPSLDMRPVLALFSPEDAFLRIESCTGCGGHLEIVTKETKRVARLTKRISDLNEAMGETAKEAAQLRAELILTRHRVKELDERNIVNRDTLVAKLEQTQRTCEADVLALKEDARRSDRAWEAKMARKDEQLTVIPALIKERDKLREELDQEISSREQDQHRKDVEIATLKAKVAHLESSAEADAKRILEARSKTEDTQRRLNNEKAEHAATAGLLLEEEGKYERCRSRLETSQEHLADLNERFNEMRAEVEASAENAEEEAGEASDALAAAKVEIQRLRTVLGTSD 391
BLAST of mRNA_H-elongata_contig542.12790.1 vs. uniprot
Match: A0A6H5K3R7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3R7_9PHAE) HSP 1 Score: 396 bits (1017), Expect = 4.430e-122 Identity = 230/386 (59.59%), Postives = 298/386 (77.20%), Query Frame = 1
Query: 1 AEGYEG--DLESAIAASRQRAEAKSVKELQMELDAVRLRLLRRSQIIDAIRKAYVRDVVMVKNELMRKSTVTEE--------EYFAQGGPGTDITDAVPSLDMRPILALFSPDDSFLRVESCNACGGHLEIVSRETKRVAQLVKRISALAEQQEKGNQETMKMRAELTLTRHRAKELEDRNIINRDTLVAKLEQTQRRCAEEMAVLKEKANLAESSWRAKLARK---DHDMEMLPMLRREVKLTHNKLAEEKTAREEDLYQRDGEITTLKAKVKKMEFSADASAGVLLRAQNECDDLKRHLNAEKAEHTAIKELFDEEQSRYDRCRRSLETTRERLADLRVRHSELRAEVEAADEAAQGEAEEANDALAAARLEIERLRGLLGTSN 1119
AEG+EG L++ +AASRQRAEAKS +ELQ+EL+AVRLRLLRRSQIIDA+R AYVRDVV+VKNELMRKS +T+E EY AQGGPGTDITDAVPSLDMRP+LALFSP+D+FLR+ESC CGGHLEIV++ETKRVA+L KRIS L E + +E ++RAEL LTRHR KEL++RNI+NRDTLVAKLEQTQR C ++ LKE A ++ +W AK+ARK D + ++P+L +E +L +E ++RE+D +++D EI TL KV +E SA+A A +L A+N+ +D +R L+ EKAEH A L +EE+ +Y+RCR LET++E LADL R +E+RAEVEA+ E A+ EA EA+DALAAA++EI+RLR +LGTS+
Sbjct: 17 AEGHEGGSSLQAVLAASRQRAEAKSAQELQLELEAVRLRLLRRSQIIDALRSAYVRDVVIVKNELMRKSAMTDEVEWVPRRWEYVAQGGPGTDITDAVPSLDMRPVLALFSPEDAFLRIESCAGCGGHLEIVTKETKRVARLTKRISDLNEAMGETAKEAAQLRAELILTRHRVKELDERNIVNRDTLVAKLEQTQRTCEADVLALKEDARRSDRAWEAKMARKASSDEQLTVIPVLTKERDKLREELDQEISSREQDQHRKDIEIATLNTKVAHLESSAEADAKRILEARNKTEDTQRRLHNEKAEHAATARLLEEEKGKYERCRSRLETSQEHLADLNERFNEMRAEVEASAENAEEEAGEASDALAAAKVEIQRLRTVLGTSD 402
BLAST of mRNA_H-elongata_contig542.12790.1 vs. uniprot
Match: A0A0P1A910_PLAHL (Uncharacterized protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1A910_PLAHL) HSP 1 Score: 82.4 bits (202), Expect = 2.750e-13 Identity = 55/156 (35.26%), Postives = 93/156 (59.62%), Query Frame = 1
Query: 79 LQMELDAVRLRLLRRSQIIDAIRKAYVRDVVMVKNELMRK-STVT--------EEEYFAQGGPGTDI-TDAVPSLDMRPILALFSPDDSFLRVESCNACGGHLEIVSRETKRV-AQLVKRISALAEQQEKGNQETMKMRAELTLTRHRAKELEDRN 513
L + ++ +R +L RR+QI++ IR+AY RDV+++K EL +K ST++ ++ +Q D +VPS+D+R +L LF+P ++ L+V C CGGHLE+V ETK + A +++ A+ ++QE MRA + A++LE+ N
Sbjct: 61 LSLHVEMLRGKLSRRNQILEVIRRAYYRDVIVIKEELRQKESTISLHGNSVKLQQALSSQNRAAIDGGLSSVPSVDLRDVLPLFAPSETMLQVHPCETCGGHLELVHGETKELQAARREKVHAMKKEQE--------MRATVQRQLSEARQLEEVN 208
BLAST of mRNA_H-elongata_contig542.12790.1 vs. uniprot
Match: A0A2P4YAJ8_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4YAJ8_9STRA) HSP 1 Score: 80.1 bits (196), Expect = 3.830e-13 Identity = 59/189 (31.22%), Postives = 98/189 (51.85%), Query Frame = 1
Query: 7 GYEGDLESAIAASRQRAEAKSVKELQMELDAVRLRLLRRSQIIDAIRKAYVRDVVMVKNEL---------MRKSTVTEEEY-----------FAQGGPGTDITDAVPSLDMRPILALFSPDDSFLRVESCNACGGHLEIVSRETKRVAQLVKRISALAEQQEKGNQETMKMRAELTLTRHRAKELEDRN 513
G +GDL+ + + Q LQ++L+ +R +L RR+Q+++ IR+AY RDV+++K EL M T+ E + G +VPS+D+R +L LF+P ++ L+V C +CGGHLE+V E+K + + ++ A KG Q+ MR + R AK++E+ N
Sbjct: 53 GIQGDLDDGVLSKDQ--------PLQLQLEMLRGKLSRRNQVLEIIRRAYYRDVLIIKEELRQSGGKLGPMESMTLQRGEIPKLQRTQSRHVSTESGTIDGGLSSVPSVDLREVLPLFAPSETVLQVHPCESCGGHLELVHGESKELKAARQEMARAA----KGEQQ---MRTMVHRMRSEAKQMEEVN 226
BLAST of mRNA_H-elongata_contig542.12790.1 vs. uniprot
Match: A0A662X1G0_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662X1G0_9STRA) HSP 1 Score: 80.1 bits (196), Expect = 1.280e-12 Identity = 79/329 (24.01%), Postives = 155/329 (47.11%), Query Frame = 1
Query: 79 LQMELDAVRLRLLRRSQIIDAIRKAYVRDVVMVKNELM-------------RKSTVTEEEYFAQGGPGTDITDAVPSLDMRPILALFSPDDSFLRVESCNACGGHLEIVSRETKRVAQLVKRISALAEQQEKGNQETMKMRAELTLTRHRAKELEDRNIINRDTLVAKLEQTQRRCAEEMAVLKEKANLAESSWRAKLARKDHDMEMLPMLRREVKLTHNKLAEEKTAREEDLYQRDGEITTLKAKVKKMEFSADASAGVLLRAQNECDDLKRHLNAEKAEHTAIKELFDEEQSRYDRCRRSLETTRERLADLRVRHSELRAEVEAADE 1026
+ ++++ +R +L RR+Q+++ IR+AY RDV+++K EL R + +GG +VPS+D+R +L LF+P ++ L+V C +CGGHLE+V E V+ ++A ++ + ++ +MR + R AK++E+ N D L +++ A+LKE A E ++ ++ + M+ +R +++L A +E++ + E +K ++ + D + + E + + L+ K E I+ F + Y R + ++ +E ADL R +L+ + DE
Sbjct: 104 MDLQIEMLRGKLSRRNQVLEVIRRAYYRDVIVIKEELRQHGGKSGNPAVLHRNGSFPTPSGVPEGG-----VSSVPSVDLRDVLQLFAPSETVLQVHPCESCGGHLELVHGE-------VRYLTAARQEMARASKGEQQMRTVVHRMRSEAKQMEEVN----DALQQRVK----------ALLKENAYTLEQVQVSRKMEREQKV-MIASMRSKLQLAQ--------ATQEEIDRLSNENKDIKQQLIRSNHDRDIFSASNNHLKEELAQVTKALHVVKVEKAQIESDFG---TSYYRLQEEIKKAKELTADLAARDVQLKEKAALCDE 394
BLAST of mRNA_H-elongata_contig542.12790.1 vs. uniprot
Match: A0A329SP22_9STRA (Uncharacterized protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A329SP22_9STRA) HSP 1 Score: 78.6 bits (192), Expect = 4.960e-12 Identity = 78/332 (23.49%), Postives = 158/332 (47.59%), Query Frame = 1
Query: 79 LQMELDAVRLRLLRRSQIIDAIRKAYVRDVVMVKNELMR--------------KSTVTEEEYFAQG----GPGTDIT---DAVPSLDMRPILALFSPDDSFLRVESCNACGGHLEIVSRETKRVAQLVKRISALAEQQEKGNQETMKMRAELTLTRHRAKELEDRNIINRDTLVAKLEQTQRRCAEEMAVLKEKANLAESSWRAKLARKDHDMEMLPMLRREVKLTHNKLAEEKTAREEDLYQRDGEITTLKAKVKKMEFSADASAGVLLRAQNECDDLKRHLNAEKAEHTAIKELFDEEQSRYDRCRRSLETTRERLADLRVRHSELRAEV 1011
LQ++L+ +R +L RR+Q+++ IR+AY RDV+++K EL + + + + ++ G T I +VPS+D+R +L LF+P ++ L+V C CGGHLE+V E+K + A ++ + + +MRA + R AK++E+ N D L +++ A++KE A E A+ ++ + ++ +R +++L A ++++ + E +K ++ + D + + E ++ + L+ K E I+ F + Y R + ++ +R+ DL R +L+ ++
Sbjct: 16 LQLQLEMLRGKLSRRNQVLEVIRRAYYRDVLVIKEELRQNAGKLGHVGSPASLRGEIPKLQHLPSSQVLAGSSTAIDGGLSSVPSVDLREVLPLFAPSETVLQVHPCETCGGHLELVHGESKE-------LKAARQEMARATKGEQQMRALVQRMRSEAKQMEEVN----DALQQRVK----------ALMKENAYTLEQLQAARKTEREQKV-IIAGMRSKLQLVQ--------ATQDEIDRLTNECKDVKQQLIRSNHDRDIFSASNNHLKEELAEVTKALHVVKVEKAQIESDFG---TNYYRLQEEIKKSRQLSEDLAARDGQLKEKI 314
BLAST of mRNA_H-elongata_contig542.12790.1 vs. uniprot
Match: A0A067CCN5_SAPPC (Uncharacterized protein (Fragment) n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067CCN5_SAPPC) HSP 1 Score: 77.0 bits (188), Expect = 1.550e-11 Identity = 80/261 (30.65%), Postives = 119/261 (45.59%), Query Frame = 1
Query: 109 RLLRRSQIIDAIRKAYVRDVVMVKNELMRKSTVTEEEYFAQGGPGTDITDAVPSLDMRPILALFSPDDSFLRVESCNACGGHLEIVSRETKRVAQLVKRISALAEQQEKGNQETM----KMRAELTLTRHRAKELEDRNIINRDTLVAKLEQTQRRCAEEMAVLKEKANLAESSWRAKLARKDH----DMEMLPMLRREVKLTHNKLAEEKTAREEDLYQRDGEITTLKAKVKKMEFSADASAGVLLRAQNECDDLKRHLN 867
RL RR +ID IR AY RDV++VK L+ + E G + A+PS+D+R L LF+P ++LRV C+ CGG LE+V ET+ + + +L + +KG Q ++RAEL + L+ R LEQ Q + KA + +W A+L K H E + L +++K H + E + + QRD L A V S A +R Q+EC+ KR L+
Sbjct: 39 RLARRCALIDTIRHAYYRDVIVVKENLLAR------ELHPSTGSVDERVHALPSVDLRDTLPLFAPSQTYLRVHPCDVCGGSLELVHGETQELNE----ARSLCAKAQKGEQNMKGIVHRLRAELKEATEISDALQQRLRALTKENAFTLEQLQ---------ISRKAEREQKTWLAELKSKLHAATATSESVSKLTQQLKELHAEHDEVTRQTKLLVRQRDDMQDELDALV----LSHAALKADCMRHQSECEATKRQLD 276
BLAST of mRNA_H-elongata_contig542.12790.1 vs. uniprot
Match: A0A067BR17_SAPPC (Uncharacterized protein (Fragment) n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067BR17_SAPPC) HSP 1 Score: 76.6 bits (187), Expect = 1.640e-11 Identity = 80/261 (30.65%), Postives = 119/261 (45.59%), Query Frame = 1
Query: 109 RLLRRSQIIDAIRKAYVRDVVMVKNELMRKSTVTEEEYFAQGGPGTDITDAVPSLDMRPILALFSPDDSFLRVESCNACGGHLEIVSRETKRVAQLVKRISALAEQQEKGNQETM----KMRAELTLTRHRAKELEDRNIINRDTLVAKLEQTQRRCAEEMAVLKEKANLAESSWRAKLARKDH----DMEMLPMLRREVKLTHNKLAEEKTAREEDLYQRDGEITTLKAKVKKMEFSADASAGVLLRAQNECDDLKRHLN 867
RL RR +ID IR AY RDV++VK L+ + E G + A+PS+D+R L LF+P ++LRV C+ CGG LE+V ET+ + + +L + +KG Q ++RAEL + L+ R LEQ Q + KA + +W A+L K H E + L +++K H + E + + QRD L A V S A +R Q+EC+ KR L+
Sbjct: 39 RLARRCALIDTIRHAYYRDVIVVKENLLAR------ELHPSTGSVDERVHALPSVDLRDTLPLFAPSQTYLRVHPCDVCGGTLELVHGETQELNE----ARSLCAKAQKGEQNMKGIVHRLRAELKEATEISDALQQRLRALTKENAFTLEQLQ---------ISRKAEREQKTWLAELKSKLHAASATTESVSKLTQQLKELHAEHDEVTKQTKLLVRQRDDMQDELDALV----LSHAALKADCMRHQSECEATKRQLD 276
BLAST of mRNA_H-elongata_contig542.12790.1 vs. uniprot
Match: A0A662XPB7_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XPB7_9STRA) HSP 1 Score: 76.6 bits (187), Expect = 2.150e-11 Identity = 83/324 (25.62%), Postives = 151/324 (46.60%), Query Frame = 1
Query: 79 LQMELDAVRLRLLRRSQIIDAIRKAYVRDVVMVKNELM--------------RKSTVTEEEYFA--QGGPGTDITDAVPSLDMRPILALFSPDDSFLRVESCNACGGHLEIVSRETKRVAQLVKRISALAEQQEKGNQETMKMRAELTLTRHRAKELEDRNIINRDTLVAKLEQTQRRCAEEMAVLKEKANLAESSWRAKLARKDHDMEMLPMLRREVKLTHNKLAEEKTAREEDLYQRDGEITTLKAKVKKMEFSADASAGVLLRAQNECDDLKRHLNAEKAEHTAIKELFDEEQSRYDRCRRSLETTRERLADLRVRHSELR 1002
+ ++L+ +R +L RR+Q+++ IR+AY RDV+++K EL R + + F G P ++ +VPS+D+R +L LF+P ++ L+V C +CGGHLE+V E Q + R S KG Q+ MR + R AK++E+ N D L +++ A+LKE A E ++ ++ + M+ +R +++L A +E++ + E +K ++ + D + + E + + L+ K E I+ F + Y R + + +E ADL R +L+
Sbjct: 104 MDLQLEMLRGKLSRRNQVLEVIRRAYYRDVIIIKEELRQHGGKLGNPAVLTARGAALHRNGSFPTPSGVPDGGLS-SVPSVDLRDVLQLFAPSETVLQVHPCESCGGHLELVHGELTAARQEMARAS-------KGEQQ---MRTVVHRMRSEAKQMEEVN----DALQQRVK----------ALLKENAYTLEQVQASRKMEREQKV-MIASMRSKLQLAQ--------ATQEEIDRLSNENKDIKQQLIRSNHDRDIFSASNNHLKEELAQVTKALHVVKVEKAQIESDFG---TSYYRLQEETKKAKELTADLAARDVQLK 390
BLAST of mRNA_H-elongata_contig542.12790.1 vs. uniprot
Match: D0MXU8_PHYIT (Uncharacterized protein n=2 Tax=Phytophthora infestans TaxID=4787 RepID=D0MXU8_PHYIT) HSP 1 Score: 76.3 bits (186), Expect = 2.740e-11 Identity = 79/317 (24.92%), Postives = 149/317 (47.00%), Query Frame = 1
Query: 100 VRLRLLRRSQIIDAIRKAYVRDVVMVKNEL----------------MRKSTVTEEEYFAQGGPGTDITDAVPSLDMRPILALFSPDDSFLRVESCNACGGHLEIVSRETKRVAQLVKRISALAEQQEKGNQETMKMRAELTLTRHRAKELEDRNIINRDTLVAKLEQTQRRCAEEMAVLKEKANLAESSWRAKLARKDHDMEMLPMLRREVKLTHNKLAEEKTAREEDLYQRDGEITTLKAKVKKMEFSADASAGVLLRAQNECDDLKRHLNAEKAEHTAIKELFDEEQSRYDRCRRSLETTRERLADLRVRHSELR 1002
+R +L RR+QI++ IR+AY RDV+++K EL R + E GG +VPS+D+R +L LF+P ++ L++ C CGGHLE+V E+K + + ++ +A KG Q+ MRA + R AK++E+ N D L +++ A++KE A E A+ ++ + ++ +R +++L A ++++ + E +K ++ + D + + E + R L+ K E I+ F + Y R + ++ +++ DL R ++L+
Sbjct: 2 LRGKLSRRNQILEVIRRAYYRDVLVIKEELRQNGRKAGHVGSIPKLQRMPSSQESSTSIDGG-----LSSVPSVDLREVLPLFAPSETVLQLHPCETCGGHLELVHGESKELKAARQEMARVA----KGEQQ---MRAVVQRMRSEAKQMEEVN----DALQQRVK----------ALMKENAYTLEQLQAARKTEREQKV-IIAGMRSKLQLVQ--------ATQDEIDRLTNECKDIKQQLVRSNHDRDIFSASNNHLKEELAQVTRALHVVKVEKAQIESDFG---TNYYRLQEEIKKSKQLTEDLAARDAQLK 280 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig542.12790.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig542.12790.1 >prot_H-elongata_contig542.12790.1 ID=prot_H-elongata_contig542.12790.1|Name=mRNA_H-elongata_contig542.12790.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=377bp AEGYEGDLESAIAASRQRAEAKSVKELQMELDAVRLRLLRRSQIIDAIRKback to top mRNA from alignment at H-elongata_contig542:1247..6512- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig542.12790.1 ID=mRNA_H-elongata_contig542.12790.1|Name=mRNA_H-elongata_contig542.12790.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=5266bp|location=Sequence derived from alignment at H-elongata_contig542:1247..6512- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig542:1247..6512- >mRNA_H-elongata_contig542.12790.1 ID=mRNA_H-elongata_contig542.12790.1|Name=mRNA_H-elongata_contig542.12790.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2262bp|location=Sequence derived from alignment at H-elongata_contig542:1247..6512- (Himanthalia elongata Himel1 dioecious)back to top |