mRNA_H-elongata_contig542.12790.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig542.12790.1
Unique NamemRNA_H-elongata_contig542.12790.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig542.12790.1 vs. uniprot
Match: D7FHT3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHT3_ECTSI)

HSP 1 Score: 409 bits (1050), Expect = 8.950e-131
Identity = 231/375 (61.60%), Postives = 298/375 (79.47%), Query Frame = 1
Query:    1 AEGYEG--DLESAIAASRQRAEAKSVKELQMELDAVRLRLLRRSQIIDAIRKAYVRDVVMVKNELMRKSTVTEEEYFAQGGPGTDITDAVPSLDMRPILALFSPDDSFLRVESCNACGGHLEIVSRETKRVAQLVKRISALAEQQEKGNQETMKMRAELTLTRHRAKELEDRNIINRDTLVAKLEQTQRRCAEEMAVLKEKANLAESSWRAKLARKDHDMEMLPMLRREVKLTHNKLAEEKTAREEDLYQRDGEITTLKAKVKKMEFSADASAGVLLRAQNECDDLKRHLNAEKAEHTAIKELFDEEQSRYDRCRRSLETTRERLADLRVRHSELRAEVEAADEAAQGEAEEANDALAAARLEIERLRGLLGTSN 1119
            AEG+EG   L++ +AASRQRAEAKS +ELQ+EL+AVRLRLLRRSQIIDA+R AYVRDVV+VKNELMRKS +T+EEY AQGGPGTDITDA+PSLDMRP+LALFSP+D+FLR+ESC  CGGHLEIV++ETKRVA+L KRIS L E   +  +E  ++RAEL LTRHR KEL++RNI+NRDTLVAKLEQTQR C  ++  LKE A  ++ +W AK+ARKD  + ++P L +E      +L +E ++RE+D +++D EI TLKAKV  +E SA+A A  +L A+++ +D +R LN EKAEH A   L  EE+ +Y+RCR  LET++E LADL  R +E+RAEVEA+ E A+ EA EA+DALAAA++EI+RLR +LGTS+
Sbjct:   17 AEGHEGGSSLQAVLAASRQRAEAKSAQELQLELEAVRLRLLRRSQIIDALRSAYVRDVVIVKNELMRKSAMTDEEYVAQGGPGTDITDAIPSLDMRPVLALFSPEDAFLRIESCTGCGGHLEIVTKETKRVARLTKRISDLNEAMGETAKEAAQLRAELILTRHRVKELDERNIVNRDTLVAKLEQTQRTCEADVLALKEDARRSDRAWEAKMARKDEQLTVIPALIKERDKLREELDQEISSREQDQHRKDVEIATLKAKVAHLESSAEADAKRILEARSKTEDTQRRLNNEKAEHAATAGLLLEEEGKYERCRSRLETSQEHLADLNERFNEMRAEVEASAENAEEEAGEASDALAAAKVEIQRLRTVLGTSD 391          
BLAST of mRNA_H-elongata_contig542.12790.1 vs. uniprot
Match: A0A6H5K3R7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3R7_9PHAE)

HSP 1 Score: 396 bits (1017), Expect = 4.430e-122
Identity = 230/386 (59.59%), Postives = 298/386 (77.20%), Query Frame = 1
Query:    1 AEGYEG--DLESAIAASRQRAEAKSVKELQMELDAVRLRLLRRSQIIDAIRKAYVRDVVMVKNELMRKSTVTEE--------EYFAQGGPGTDITDAVPSLDMRPILALFSPDDSFLRVESCNACGGHLEIVSRETKRVAQLVKRISALAEQQEKGNQETMKMRAELTLTRHRAKELEDRNIINRDTLVAKLEQTQRRCAEEMAVLKEKANLAESSWRAKLARK---DHDMEMLPMLRREVKLTHNKLAEEKTAREEDLYQRDGEITTLKAKVKKMEFSADASAGVLLRAQNECDDLKRHLNAEKAEHTAIKELFDEEQSRYDRCRRSLETTRERLADLRVRHSELRAEVEAADEAAQGEAEEANDALAAARLEIERLRGLLGTSN 1119
            AEG+EG   L++ +AASRQRAEAKS +ELQ+EL+AVRLRLLRRSQIIDA+R AYVRDVV+VKNELMRKS +T+E        EY AQGGPGTDITDAVPSLDMRP+LALFSP+D+FLR+ESC  CGGHLEIV++ETKRVA+L KRIS L E   +  +E  ++RAEL LTRHR KEL++RNI+NRDTLVAKLEQTQR C  ++  LKE A  ++ +W AK+ARK   D  + ++P+L +E      +L +E ++RE+D +++D EI TL  KV  +E SA+A A  +L A+N+ +D +R L+ EKAEH A   L +EE+ +Y+RCR  LET++E LADL  R +E+RAEVEA+ E A+ EA EA+DALAAA++EI+RLR +LGTS+
Sbjct:   17 AEGHEGGSSLQAVLAASRQRAEAKSAQELQLELEAVRLRLLRRSQIIDALRSAYVRDVVIVKNELMRKSAMTDEVEWVPRRWEYVAQGGPGTDITDAVPSLDMRPVLALFSPEDAFLRIESCAGCGGHLEIVTKETKRVARLTKRISDLNEAMGETAKEAAQLRAELILTRHRVKELDERNIVNRDTLVAKLEQTQRTCEADVLALKEDARRSDRAWEAKMARKASSDEQLTVIPVLTKERDKLREELDQEISSREQDQHRKDIEIATLNTKVAHLESSAEADAKRILEARNKTEDTQRRLHNEKAEHAATARLLEEEKGKYERCRSRLETSQEHLADLNERFNEMRAEVEASAENAEEEAGEASDALAAAKVEIQRLRTVLGTSD 402          
BLAST of mRNA_H-elongata_contig542.12790.1 vs. uniprot
Match: A0A0P1A910_PLAHL (Uncharacterized protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1A910_PLAHL)

HSP 1 Score: 82.4 bits (202), Expect = 2.750e-13
Identity = 55/156 (35.26%), Postives = 93/156 (59.62%), Query Frame = 1
Query:   79 LQMELDAVRLRLLRRSQIIDAIRKAYVRDVVMVKNELMRK-STVT--------EEEYFAQGGPGTDI-TDAVPSLDMRPILALFSPDDSFLRVESCNACGGHLEIVSRETKRV-AQLVKRISALAEQQEKGNQETMKMRAELTLTRHRAKELEDRN 513
            L + ++ +R +L RR+QI++ IR+AY RDV+++K EL +K ST++        ++   +Q     D    +VPS+D+R +L LF+P ++ L+V  C  CGGHLE+V  ETK + A   +++ A+ ++QE        MRA +      A++LE+ N
Sbjct:   61 LSLHVEMLRGKLSRRNQILEVIRRAYYRDVIVIKEELRQKESTISLHGNSVKLQQALSSQNRAAIDGGLSSVPSVDLRDVLPLFAPSETMLQVHPCETCGGHLELVHGETKELQAARREKVHAMKKEQE--------MRATVQRQLSEARQLEEVN 208          
BLAST of mRNA_H-elongata_contig542.12790.1 vs. uniprot
Match: A0A2P4YAJ8_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4YAJ8_9STRA)

HSP 1 Score: 80.1 bits (196), Expect = 3.830e-13
Identity = 59/189 (31.22%), Postives = 98/189 (51.85%), Query Frame = 1
Query:    7 GYEGDLESAIAASRQRAEAKSVKELQMELDAVRLRLLRRSQIIDAIRKAYVRDVVMVKNEL---------MRKSTVTEEEY-----------FAQGGPGTDITDAVPSLDMRPILALFSPDDSFLRVESCNACGGHLEIVSRETKRVAQLVKRISALAEQQEKGNQETMKMRAELTLTRHRAKELEDRN 513
            G +GDL+  + +  Q         LQ++L+ +R +L RR+Q+++ IR+AY RDV+++K EL         M   T+   E              + G       +VPS+D+R +L LF+P ++ L+V  C +CGGHLE+V  E+K +    + ++  A    KG Q+   MR  +   R  AK++E+ N
Sbjct:   53 GIQGDLDDGVLSKDQ--------PLQLQLEMLRGKLSRRNQVLEIIRRAYYRDVLIIKEELRQSGGKLGPMESMTLQRGEIPKLQRTQSRHVSTESGTIDGGLSSVPSVDLREVLPLFAPSETVLQVHPCESCGGHLELVHGESKELKAARQEMARAA----KGEQQ---MRTMVHRMRSEAKQMEEVN 226          
BLAST of mRNA_H-elongata_contig542.12790.1 vs. uniprot
Match: A0A662X1G0_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662X1G0_9STRA)

HSP 1 Score: 80.1 bits (196), Expect = 1.280e-12
Identity = 79/329 (24.01%), Postives = 155/329 (47.11%), Query Frame = 1
Query:   79 LQMELDAVRLRLLRRSQIIDAIRKAYVRDVVMVKNELM-------------RKSTVTEEEYFAQGGPGTDITDAVPSLDMRPILALFSPDDSFLRVESCNACGGHLEIVSRETKRVAQLVKRISALAEQQEKGNQETMKMRAELTLTRHRAKELEDRNIINRDTLVAKLEQTQRRCAEEMAVLKEKANLAESSWRAKLARKDHDMEMLPMLRREVKLTHNKLAEEKTAREEDLYQRDGEITTLKAKVKKMEFSADASAGVLLRAQNECDDLKRHLNAEKAEHTAIKELFDEEQSRYDRCRRSLETTRERLADLRVRHSELRAEVEAADE 1026
            + ++++ +R +L RR+Q+++ IR+AY RDV+++K EL              R  +        +GG       +VPS+D+R +L LF+P ++ L+V  C +CGGHLE+V  E       V+ ++A  ++  + ++   +MR  +   R  AK++E+ N    D L  +++          A+LKE A   E    ++   ++  + M+  +R +++L          A +E++ +   E   +K ++ +     D  +      + E   + + L+  K E   I+  F    + Y R +  ++  +E  ADL  R  +L+ +    DE
Sbjct:  104 MDLQIEMLRGKLSRRNQVLEVIRRAYYRDVIVIKEELRQHGGKSGNPAVLHRNGSFPTPSGVPEGG-----VSSVPSVDLRDVLQLFAPSETVLQVHPCESCGGHLELVHGE-------VRYLTAARQEMARASKGEQQMRTVVHRMRSEAKQMEEVN----DALQQRVK----------ALLKENAYTLEQVQVSRKMEREQKV-MIASMRSKLQLAQ--------ATQEEIDRLSNENKDIKQQLIRSNHDRDIFSASNNHLKEELAQVTKALHVVKVEKAQIESDFG---TSYYRLQEEIKKAKELTADLAARDVQLKEKAALCDE 394          
BLAST of mRNA_H-elongata_contig542.12790.1 vs. uniprot
Match: A0A329SP22_9STRA (Uncharacterized protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A329SP22_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 4.960e-12
Identity = 78/332 (23.49%), Postives = 158/332 (47.59%), Query Frame = 1
Query:   79 LQMELDAVRLRLLRRSQIIDAIRKAYVRDVVMVKNELMR--------------KSTVTEEEYFAQG----GPGTDIT---DAVPSLDMRPILALFSPDDSFLRVESCNACGGHLEIVSRETKRVAQLVKRISALAEQQEKGNQETMKMRAELTLTRHRAKELEDRNIINRDTLVAKLEQTQRRCAEEMAVLKEKANLAESSWRAKLARKDHDMEMLPMLRREVKLTHNKLAEEKTAREEDLYQRDGEITTLKAKVKKMEFSADASAGVLLRAQNECDDLKRHLNAEKAEHTAIKELFDEEQSRYDRCRRSLETTRERLADLRVRHSELRAEV 1011
            LQ++L+ +R +L RR+Q+++ IR+AY RDV+++K EL +              +  + + ++        G  T I     +VPS+D+R +L LF+P ++ L+V  C  CGGHLE+V  E+K        + A  ++  +  +   +MRA +   R  AK++E+ N    D L  +++          A++KE A   E    A+   ++  + ++  +R +++L          A ++++ +   E   +K ++ +     D  +      + E  ++ + L+  K E   I+  F    + Y R +  ++ +R+   DL  R  +L+ ++
Sbjct:   16 LQLQLEMLRGKLSRRNQVLEVIRRAYYRDVLVIKEELRQNAGKLGHVGSPASLRGEIPKLQHLPSSQVLAGSSTAIDGGLSSVPSVDLREVLPLFAPSETVLQVHPCETCGGHLELVHGESKE-------LKAARQEMARATKGEQQMRALVQRMRSEAKQMEEVN----DALQQRVK----------ALMKENAYTLEQLQAARKTEREQKV-IIAGMRSKLQLVQ--------ATQDEIDRLTNECKDVKQQLIRSNHDRDIFSASNNHLKEELAEVTKALHVVKVEKAQIESDFG---TNYYRLQEEIKKSRQLSEDLAARDGQLKEKI 314          
BLAST of mRNA_H-elongata_contig542.12790.1 vs. uniprot
Match: A0A067CCN5_SAPPC (Uncharacterized protein (Fragment) n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067CCN5_SAPPC)

HSP 1 Score: 77.0 bits (188), Expect = 1.550e-11
Identity = 80/261 (30.65%), Postives = 119/261 (45.59%), Query Frame = 1
Query:  109 RLLRRSQIIDAIRKAYVRDVVMVKNELMRKSTVTEEEYFAQGGPGTDITDAVPSLDMRPILALFSPDDSFLRVESCNACGGHLEIVSRETKRVAQLVKRISALAEQQEKGNQETM----KMRAELTLTRHRAKELEDRNIINRDTLVAKLEQTQRRCAEEMAVLKEKANLAESSWRAKLARKDH----DMEMLPMLRREVKLTHNKLAEEKTAREEDLYQRDGEITTLKAKVKKMEFSADASAGVLLRAQNECDDLKRHLN 867
            RL RR  +ID IR AY RDV++VK  L+ +      E     G   +   A+PS+D+R  L LF+P  ++LRV  C+ CGG LE+V  ET+ + +      +L  + +KG Q       ++RAEL      +  L+ R           LEQ Q         +  KA   + +W A+L  K H      E +  L +++K  H +  E     +  + QRD     L A V     S  A     +R Q+EC+  KR L+
Sbjct:   39 RLARRCALIDTIRHAYYRDVIVVKENLLAR------ELHPSTGSVDERVHALPSVDLRDTLPLFAPSQTYLRVHPCDVCGGSLELVHGETQELNE----ARSLCAKAQKGEQNMKGIVHRLRAELKEATEISDALQQRLRALTKENAFTLEQLQ---------ISRKAEREQKTWLAELKSKLHAATATSESVSKLTQQLKELHAEHDEVTRQTKLLVRQRDDMQDELDALV----LSHAALKADCMRHQSECEATKRQLD 276          
BLAST of mRNA_H-elongata_contig542.12790.1 vs. uniprot
Match: A0A067BR17_SAPPC (Uncharacterized protein (Fragment) n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067BR17_SAPPC)

HSP 1 Score: 76.6 bits (187), Expect = 1.640e-11
Identity = 80/261 (30.65%), Postives = 119/261 (45.59%), Query Frame = 1
Query:  109 RLLRRSQIIDAIRKAYVRDVVMVKNELMRKSTVTEEEYFAQGGPGTDITDAVPSLDMRPILALFSPDDSFLRVESCNACGGHLEIVSRETKRVAQLVKRISALAEQQEKGNQETM----KMRAELTLTRHRAKELEDRNIINRDTLVAKLEQTQRRCAEEMAVLKEKANLAESSWRAKLARKDH----DMEMLPMLRREVKLTHNKLAEEKTAREEDLYQRDGEITTLKAKVKKMEFSADASAGVLLRAQNECDDLKRHLN 867
            RL RR  +ID IR AY RDV++VK  L+ +      E     G   +   A+PS+D+R  L LF+P  ++LRV  C+ CGG LE+V  ET+ + +      +L  + +KG Q       ++RAEL      +  L+ R           LEQ Q         +  KA   + +W A+L  K H      E +  L +++K  H +  E     +  + QRD     L A V     S  A     +R Q+EC+  KR L+
Sbjct:   39 RLARRCALIDTIRHAYYRDVIVVKENLLAR------ELHPSTGSVDERVHALPSVDLRDTLPLFAPSQTYLRVHPCDVCGGTLELVHGETQELNE----ARSLCAKAQKGEQNMKGIVHRLRAELKEATEISDALQQRLRALTKENAFTLEQLQ---------ISRKAEREQKTWLAELKSKLHAASATTESVSKLTQQLKELHAEHDEVTKQTKLLVRQRDDMQDELDALV----LSHAALKADCMRHQSECEATKRQLD 276          
BLAST of mRNA_H-elongata_contig542.12790.1 vs. uniprot
Match: A0A662XPB7_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XPB7_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 2.150e-11
Identity = 83/324 (25.62%), Postives = 151/324 (46.60%), Query Frame = 1
Query:   79 LQMELDAVRLRLLRRSQIIDAIRKAYVRDVVMVKNELM--------------RKSTVTEEEYFA--QGGPGTDITDAVPSLDMRPILALFSPDDSFLRVESCNACGGHLEIVSRETKRVAQLVKRISALAEQQEKGNQETMKMRAELTLTRHRAKELEDRNIINRDTLVAKLEQTQRRCAEEMAVLKEKANLAESSWRAKLARKDHDMEMLPMLRREVKLTHNKLAEEKTAREEDLYQRDGEITTLKAKVKKMEFSADASAGVLLRAQNECDDLKRHLNAEKAEHTAIKELFDEEQSRYDRCRRSLETTRERLADLRVRHSELR 1002
            + ++L+ +R +L RR+Q+++ IR+AY RDV+++K EL               R + +     F    G P   ++ +VPS+D+R +L LF+P ++ L+V  C +CGGHLE+V  E     Q + R S       KG Q+   MR  +   R  AK++E+ N    D L  +++          A+LKE A   E    ++   ++  + M+  +R +++L          A +E++ +   E   +K ++ +     D  +      + E   + + L+  K E   I+  F    + Y R +   +  +E  ADL  R  +L+
Sbjct:  104 MDLQLEMLRGKLSRRNQVLEVIRRAYYRDVIIIKEELRQHGGKLGNPAVLTARGAALHRNGSFPTPSGVPDGGLS-SVPSVDLRDVLQLFAPSETVLQVHPCESCGGHLELVHGELTAARQEMARAS-------KGEQQ---MRTVVHRMRSEAKQMEEVN----DALQQRVK----------ALLKENAYTLEQVQASRKMEREQKV-MIASMRSKLQLAQ--------ATQEEIDRLSNENKDIKQQLIRSNHDRDIFSASNNHLKEELAQVTKALHVVKVEKAQIESDFG---TSYYRLQEETKKAKELTADLAARDVQLK 390          
BLAST of mRNA_H-elongata_contig542.12790.1 vs. uniprot
Match: D0MXU8_PHYIT (Uncharacterized protein n=2 Tax=Phytophthora infestans TaxID=4787 RepID=D0MXU8_PHYIT)

HSP 1 Score: 76.3 bits (186), Expect = 2.740e-11
Identity = 79/317 (24.92%), Postives = 149/317 (47.00%), Query Frame = 1
Query:  100 VRLRLLRRSQIIDAIRKAYVRDVVMVKNEL----------------MRKSTVTEEEYFAQGGPGTDITDAVPSLDMRPILALFSPDDSFLRVESCNACGGHLEIVSRETKRVAQLVKRISALAEQQEKGNQETMKMRAELTLTRHRAKELEDRNIINRDTLVAKLEQTQRRCAEEMAVLKEKANLAESSWRAKLARKDHDMEMLPMLRREVKLTHNKLAEEKTAREEDLYQRDGEITTLKAKVKKMEFSADASAGVLLRAQNECDDLKRHLNAEKAEHTAIKELFDEEQSRYDRCRRSLETTRERLADLRVRHSELR 1002
            +R +L RR+QI++ IR+AY RDV+++K EL                 R  +  E      GG       +VPS+D+R +L LF+P ++ L++  C  CGGHLE+V  E+K +    + ++ +A    KG Q+   MRA +   R  AK++E+ N    D L  +++          A++KE A   E    A+   ++  + ++  +R +++L          A ++++ +   E   +K ++ +     D  +      + E   + R L+  K E   I+  F    + Y R +  ++ +++   DL  R ++L+
Sbjct:    2 LRGKLSRRNQILEVIRRAYYRDVLVIKEELRQNGRKAGHVGSIPKLQRMPSSQESSTSIDGG-----LSSVPSVDLREVLPLFAPSETVLQLHPCETCGGHLELVHGESKELKAARQEMARVA----KGEQQ---MRAVVQRMRSEAKQMEEVN----DALQQRVK----------ALMKENAYTLEQLQAARKTEREQKV-IIAGMRSKLQLVQ--------ATQDEIDRLTNECKDIKQQLVRSNHDRDIFSASNNHLKEELAQVTRALHVVKVEKAQIESDFG---TNYYRLQEEIKKSKQLTEDLAARDAQLK 280          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig542.12790.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FHT3_ECTSI8.950e-13161.60Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K3R7_9PHAE4.430e-12259.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A0P1A910_PLAHL2.750e-1335.26Uncharacterized protein n=1 Tax=Plasmopara halsted... [more]
A0A2P4YAJ8_9STRA3.830e-1331.22Uncharacterized protein (Fragment) n=1 Tax=Phytoph... [more]
A0A662X1G0_9STRA1.280e-1224.01Uncharacterized protein n=1 Tax=Nothophytophthora ... [more]
A0A329SP22_9STRA4.960e-1223.49Uncharacterized protein n=2 Tax=Phytophthora TaxID... [more]
A0A067CCN5_SAPPC1.550e-1130.65Uncharacterized protein (Fragment) n=1 Tax=Saprole... [more]
A0A067BR17_SAPPC1.640e-1130.65Uncharacterized protein (Fragment) n=1 Tax=Saprole... [more]
A0A662XPB7_9STRA2.150e-1125.62Uncharacterized protein n=1 Tax=Nothophytophthora ... [more]
D0MXU8_PHYIT2.740e-1124.92Uncharacterized protein n=2 Tax=Phytophthora infes... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig542contigH-elongata_contig542:1247..6512 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score414.5
Seed ortholog evalue5.4e-113
Seed eggNOG ortholog2880.D7FHT3
KEGG koko:K10352
KEGG Pathwayko04530,map04530
EggNOG OGs2CNW5@1,2QYAX@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04147,ko04812
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-07_006690.2
Exons9
Model size1131
Cds size1131
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930883.0902052-CDS-H-elongata_contig542:1246..13631622930883.0902052-CDS-H-elongata_contig542:1246..1363Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig542 1247..1363 -
1691679610.4122384-CDS-H-elongata_contig542:1246..13631691679610.4122384-CDS-H-elongata_contig542:1246..1363Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig542 1247..1363 -
1622930883.1069722-CDS-H-elongata_contig542:2053..21911622930883.1069722-CDS-H-elongata_contig542:2053..2191Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig542 2054..2191 -
1691679610.4243684-CDS-H-elongata_contig542:2053..21911691679610.4243684-CDS-H-elongata_contig542:2053..2191Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig542 2054..2191 -
1622930883.1216857-CDS-H-elongata_contig542:2527..26261622930883.1216857-CDS-H-elongata_contig542:2527..2626Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig542 2528..2626 -
1691679610.4344797-CDS-H-elongata_contig542:2527..26261691679610.4344797-CDS-H-elongata_contig542:2527..2626Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig542 2528..2626 -
1622930883.1342006-CDS-H-elongata_contig542:2818..29531622930883.1342006-CDS-H-elongata_contig542:2818..2953Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig542 2819..2953 -
1691679610.4447987-CDS-H-elongata_contig542:2818..29531691679610.4447987-CDS-H-elongata_contig542:2818..2953Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig542 2819..2953 -
1622930883.1546028-CDS-H-elongata_contig542:3122..32131622930883.1546028-CDS-H-elongata_contig542:3122..3213Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig542 3123..3213 -
1691679610.4543839-CDS-H-elongata_contig542:3122..32131691679610.4543839-CDS-H-elongata_contig542:3122..3213Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig542 3123..3213 -
1622930883.1728158-CDS-H-elongata_contig542:3667..38081622930883.1728158-CDS-H-elongata_contig542:3667..3808Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig542 3668..3808 -
1691679610.4639034-CDS-H-elongata_contig542:3667..38081691679610.4639034-CDS-H-elongata_contig542:3667..3808Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig542 3668..3808 -
1622930883.19458-CDS-H-elongata_contig542:4484..46781622930883.19458-CDS-H-elongata_contig542:4484..4678Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig542 4485..4678 -
1691679610.473199-CDS-H-elongata_contig542:4484..46781691679610.473199-CDS-H-elongata_contig542:4484..4678Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig542 4485..4678 -
1622930883.2117486-CDS-H-elongata_contig542:5773..59141622930883.2117486-CDS-H-elongata_contig542:5773..5914Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig542 5774..5914 -
1691679610.4829173-CDS-H-elongata_contig542:5773..59141691679610.4829173-CDS-H-elongata_contig542:5773..5914Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig542 5774..5914 -
1622930883.2291777-CDS-H-elongata_contig542:6437..65121622930883.2291777-CDS-H-elongata_contig542:6437..6512Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig542 6438..6512 -
1691679610.4932969-CDS-H-elongata_contig542:6437..65121691679610.4932969-CDS-H-elongata_contig542:6437..6512Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig542 6438..6512 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig542.12790.1prot_H-elongata_contig542.12790.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig542 1247..6512 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig542.12790.1

>prot_H-elongata_contig542.12790.1 ID=prot_H-elongata_contig542.12790.1|Name=mRNA_H-elongata_contig542.12790.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=377bp
AEGYEGDLESAIAASRQRAEAKSVKELQMELDAVRLRLLRRSQIIDAIRK
AYVRDVVMVKNELMRKSTVTEEEYFAQGGPGTDITDAVPSLDMRPILALF
SPDDSFLRVESCNACGGHLEIVSRETKRVAQLVKRISALAEQQEKGNQET
MKMRAELTLTRHRAKELEDRNIINRDTLVAKLEQTQRRCAEEMAVLKEKA
NLAESSWRAKLARKDHDMEMLPMLRREVKLTHNKLAEEKTAREEDLYQRD
GEITTLKAKVKKMEFSADASAGVLLRAQNECDDLKRHLNAEKAEHTAIKE
LFDEEQSRYDRCRRSLETTRERLADLRVRHSELRAEVEAADEAAQGEAEE
ANDALAAARLEIERLRGLLGTSNTER*
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mRNA from alignment at H-elongata_contig542:1247..6512-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig542.12790.1 ID=mRNA_H-elongata_contig542.12790.1|Name=mRNA_H-elongata_contig542.12790.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=5266bp|location=Sequence derived from alignment at H-elongata_contig542:1247..6512- (Himanthalia elongata Himel1 dioecious)
GCGGAGGGGTATGAAGGAGACCTCGAATCCGCCATCGCCGCTAGCCGTCA ACGAGCAGAGGCTAAAAGCGTTAAGGTAATAGCTGAGCGGAGGGTGGAAA AAAGAGATGCACAACCTACTGGTGATGTGTTGAGATGTTACCCCCTAGAA CATCGAGGCAAATAAAAGTAGCACATTAGAAACGTCAGTATAACCGGTGT ATGAGAGTCCCATGGCACTATCAAATCTCCACTCATTCGGACCGCGACTT TCATCAAGCGCCAAAGAAAATGGTCAGGCTCGATGATCACTAACCTACTG CTATCCCAGCTATCTGGGCTGTGCCAGTGTTGTGATAGATGCGCTCAGTT GTCCTCAGCCGATAGTTCGTCCCAGGTGTGCGGTAACGGTTGTGATGTTC TGAGTTGGGAGGGAGCAATTTTCCCTATCCACGCCTGAACGGCGGTAACT ACTATAAAAGAGCTCCTCGGATCCTACGTAAATTATATATCAATCATTAT AACAGGCGTATGCCGGACCACTATCGACAACGCTTGCTCATAAAAAAACC ATTTCTGCCGACTCTGTTTGGCCACCGCCACCCTTGCCATACATATAGGA GCTACAAATGGAACTGGACGCAGTGAGGCTGAGGCTGCTACGCCGAAGCC AGATCATCGACGCTATTCGGAAGGCATACGTCCGGGACGTTGTGATGGTG AAGAACGAGCTCATGCGCAAGTCCACCGTGACTGAAGAGGTGAAGCCTCC GGTATCATTTCACGAGATTGTACATTTTCGAACCGGGGTCGTGATTGTAC ACTTGATTTACAGCAACATATCTTCAGGCATACCGGAAGGAATGCAGTTG TCGGGGTACGCACGCAGCGTAATTGTGAAGTGTAAAGCACCCTGGAGGGG TTCGCCCCGGTATAGACAACAACTGACGCAACTGTTGATCCATTACTGCT TCGGGGATCTAGTGATAAGAGATGTTGCACTTTCGCCTCTAAAATGAACA AAATGCCTGTATCCATCCCTACTGGTCTCCATTACTTAAACCAAGACAAT ACGCGAGTAAAGCGTAATTTACGGCAAAATATGGATCACTTTGAGCTTTG TATTACATAGCCTTGGAAACAAGCTTCTGCTTATCGCAAAACGCCATCAT CCCACTTCTCTCTGAGAAAAGCTCTAGAGACTATACTACAGGCTATACAA AAACAATGAGAGTAAACATGAATTCGACGGAGCAAGCAGTATCGGGGCTG GAATTTTGGCAAAAAAAAATCCCACCACGTTGTTTCGTTTGCAGATAGGT TAGACTACTCTATCCGATCCGATTCAGCTATTTTGGTCGAGTGGTCTATT TCTCGCTGTGTGGCTTCGAACGTAAATTAGCCACTGGTAGTAGGTACAAA TGTTCCGCGTATTTTTACTCCCTACCCACAAGAATGCACGGTTCTCTATG CCGTGCTTTTTCTGGGTGTTCCCTGCCGGACGGGATATAATATACATATA TATATATATATTATAGAAGGAGGAGCGGGTGTATTTTTGTCTGTGTTTAT GTACCAATATGACGAAGTAGCACCCACACCGCGTCCACAGGGTCTGCAGC CTATGGAAGGAGTATGTACATGTATTACCATTATAAGTCAAGGGGGTTTT AACTCACCGCGAACAGCGTCAAGAATATCGTACCACCTAGTCCTATCAGC TAAGATGATGGTGCCAATGACGGCCGAAGCGAAGCACAACGGGCGGGGCG CCAAGCCCAACACGTCGCACTTTCGCGCAGACCTGACCCTTCTCTGGCCC ACGCCATGCCCCCCGTGCCCATCCTGCTCTTCAGGAGTATTTCGCCCAAG GAGGCCCCGGGACCGACATCACTGACGCCGTACCAAGCCTCGACATGCGC CCCATCCTGGCGCTGTTTTCTCCCGATGATTCGTTTCTCAGGGTTGAGTC ATGCAACGCTTGCGGAGGCCACCTAGAAATCGTCTCCCGCGAGACGAAGC GGGTAGCCCAGCTCGTCAAACGCATCAGGTGCGCACGTGACTCATCCCCC CCCCCATATCTCTCTCCTCGTAGGGACGACCCTCCCTTTAAAAGCCTACT TGTCCGCTTACCGGTCCGGGAATGGATTGATGATTTGGGGCTTTTCTCGC GGGTGTAAGATGACCAGGTTGTTGAGGGTTTTGAGACTGTTGGTTGCACC TTCGTCTCGCACGTATTACTACTACGTATTACCATTACTCTCAAATTTAG TGTAGTATGAGGTATCGTGCCTTGGCCTTGTCCCAGGTGGCTCAGCTTGC GAAACTCGCTGTACGTAATAGGCGGGCGGGACTTGTGTATGAGCGACCAT GCTCGCGGAGTGTGGTCCAGTTCCTTATCCCACAAGGCAACCTGTAATAT GGATGTCGTAGGCGGTGGGGTGTGTAGTATCAATTTACGCAAGAAACACC GTAAACGAAGGTCCCCACATTGCTTTATCGGCAAATGTTGGTAGCTAGCA AATATACCGCAATGTGTAACCACCTTCTATCGAGGTCCTTTCAAATCCAC CGTTCTGTTTTTATTATAATCGGGTGGGGCAACCTATCCCCGTGTCACAT GCGGTGGGACTCTGTGGAGGTTTTCAATCGTAGAGTCTTAGCCCGCGGCG TCTCATCGCGGCACTCGACCGCCGGGCCCACGATGCAACACTTTCCATAC TTAGCGCCTTGGCAGAGCAACAAGAGAAGGGCAACCAAGAGACCATGAAG ATGAGAGCCGAGCTGACGCTAACTCGACACCGCGCGAAGGAACTGGAGGA TCGGAACATCATCAACAGGGATACTCTCGTCGCGAAGCTCGAACAGTGAG AATATGGTTTAACGCATAATATCTTGACTGGAGGCGTCGCGGTCGCGGTT GAGAAAGCTCAAAGAATCGATGCACGCGATTTCGAAACGACTCCCCCTTT TTGTGAGCATCGCTTGCTTGATGCTTATTTAGCTACACGGCGGTAGGCAG AAATAACACGGGTGGGGTAATTAGCCAAAGGTGAGTTCGACGGGAAGTAA GCGTGATTAAAACAACGACATGACTCTAAACAAGCACTAATTCGTTCAGG ACACAGCCCTTTGTGTGATCCATGACATACTGAACTGCCGTGGAGGATTG CGTTCAAGAAATTGACATCTTGGCCCTATATTGACGTCGGCCGCCAGTAA CAAAGTGTATGTGATGAGTTACCGATCGCGGCTCCTTTCCGGCCATCCGC GTAAAGCCTCCTGCGGCTGGTCGGCCCCACGTGTAACGCCTCCAAACAGA ACCCAGAGAAGGTGCGCGGAAGAAATGGCCGTGCTAAAAGAGAAGGCGAA TCTTGCAGAGAGTTCTTGGCGGGCTAAACTGGCCCGGAAAGTAAGTGTGT GCGTGTGTGTGTGTGTACTTATTAAATTGCACATAACCGCGCAATCCGGC CCTGTCTTCCTAGTCATTATATGCCACTCGTATTGATCCTCCTAGGGTGG GATCAATGATACTGTGTGTGTGTTATCTATATCTAATAGATGCCACTGTT TTTACTCAGGACCATGATATGGAGATGCTGCCAATGCTGCGGCGGGAAGT AAAGCTGACCCATAACAAGTTGGCGGAGGAAAAGACAGCAAGAGAAGAAG ACTTATATCAGAGGGATGGCGAGATCACCACGCTCAAGGCGAAGGTGACC TAACCTCTGTCCGGGCGTGGGACGGGACGTAACCACGCGTCTTGTGGGGG TTTAAGTCATGGTACACTGTGGCCCGCGCCGCGTTCGCCGCGGGGTCGAT TCAGAACATGTAAGACTGCCGACATAATACTCTCGGTTAAACCAATGGCT TTGTTGTGGTCTTCACCACCAACGGCGCGAAAAAAGGTGAAAAAAATGGA GTTTTCCGCCGATGCTAGCGCAGGGGTGCTGCTAAGAGCGCAGAACGAGT GCGATGATCTTAAGCGCCACCTAAATGCAGAGAAGGTGAGAGGGTGAGAG GAACTTTCGCCGGGGTACGAGGGGGAGATGGGGGGGGGGGGCAGGATGCA CTTTTTCTCTTGCTGCGCGTGACATCGATCTTGGTGGTCGAGGGGGAAGG TGGATCGACTGTGATGCTAAGCGACAAATAATACAACACGTGCACCAATG CTGACCTCTGGAAAGTTTAATGTTTACCTTGATAACACACTCACACATCC ACATCCTGTTTGTCGAGTTTCAGCTGCTCGTACATCCGCGAAATCCGCGT TTCAATAGCAAAACGTTTATTTTATATCATATCCGTTCGTTTCGTTTCAT ACTGCCTCACGCCGCCTCAAGGCGGAACACACCGCGATTAAAGAGCTGTT TGATGAAGAGCAGTCACGCTACGACAGGTGCCGGCGTAGCCTGGAAACTA CGCGGGAGCGCCTCGCCGATTTGAGAGTTCGGCACAGCGAATTGCGGGCG GAAGTCGAGGTGTGCGCTTCTGCTGTCTGTTGGGCGGCCGTTTATTATTA TTATTTTTCCTCCTTTTTCTCTATTTTATCTACTTTTCTTGCTTTATGCT TCTGTTGTTTTTGTTTGATTTAATTATTATTTATAATTCTTGTATTATTT ATTGTACTACTACTGTATTTCTTTTCCCCCCCTTGTTTTCTTCTTGTTTT GTGTTGTTTTTTCGCCTGTATATTTGTTTGATTGCTTCTTTGTTTTGCTG TTTGCTTGTTTGTGTTCTGTTTTGCTCTTCATTTTCCTCCGTCAGCCAAA AAAAAGGAAAGAGACCCGACGAAGCTAAATTTCCACGATACTTTCCGGAC GCGTACGATTCCGTCGCAAGACCTTCAGAAGAACACCCCGCTTTAAGCCC CCCCACTCTCCTCTTCGCTTGTATCCTATTGTGGTTCAAATACAATCAAA TATCCATACCGACCGGCCGAGTCGCCAGCCAACCATTTTTCCATGTAACC ACCCGTTACGATCTATCGCATCGTGTAGGAGCCAGGGTTAACACTTCTCT CCCGACCTTCGTCTTTTCTCAAGGGACATGTATGTGCTTGTCATAGAAGT AGGCTGGAAGGCAGGTATAATTACTTATATCTCCAATTTAATGCGGCTGA TATATTATTGTCTGCTGTGATGGTGTCTTAATATATTCCGGGGTTGTAGG CGGCAGACGAGGCGGCGCAAGGTGAGGCCGAGGAAGCAAACGACGCTCTA GCCGCGGCTAGACTGGAAATCGAGCGGTTGCGAGGGTTGTTGGGAACAAG CAACACAGAGAGGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig542:1247..6512-

>mRNA_H-elongata_contig542.12790.1 ID=mRNA_H-elongata_contig542.12790.1|Name=mRNA_H-elongata_contig542.12790.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2262bp|location=Sequence derived from alignment at H-elongata_contig542:1247..6512- (Himanthalia elongata Himel1 dioecious)
GCGGAGGGGTATGAAGGAGACCTCGAATCCGCCATCGCCGCTAGCCGTCA
ACGAGCAGAGGCTAAAAGCGTTAAGGCGGAGGGGTATGAAGGAGACCTCG
AATCCGCCATCGCCGCTAGCCGTCAACGAGCAGAGGCTAAAAGCGTTAAG
GAGCTACAAATGGAACTGGACGCAGTGAGGCTGAGGCTGCTACGCCGAAG
CCAGATCATCGACGCTATTCGGAAGGCATACGTCCGGGACGTTGTGATGG
TGAAGAACGAGCTCATGCGCAAGTCCACCGTGACTGAAGAGGAGCTACAA
ATGGAACTGGACGCAGTGAGGCTGAGGCTGCTACGCCGAAGCCAGATCAT
CGACGCTATTCGGAAGGCATACGTCCGGGACGTTGTGATGGTGAAGAACG
AGCTCATGCGCAAGTCCACCGTGACTGAAGAGGAGTATTTCGCCCAAGGA
GGCCCCGGGACCGACATCACTGACGCCGTACCAAGCCTCGACATGCGCCC
CATCCTGGCGCTGTTTTCTCCCGATGATTCGTTTCTCAGGGTTGAGTCAT
GCAACGCTTGCGGAGGCCACCTAGAAATCGTCTCCCGCGAGACGAAGCGG
GTAGCCCAGCTCGTCAAACGCATCAGGAGTATTTCGCCCAAGGAGGCCCC
GGGACCGACATCACTGACGCCGTACCAAGCCTCGACATGCGCCCCATCCT
GGCGCTGTTTTCTCCCGATGATTCGTTTCTCAGGGTTGAGTCATGCAACG
CTTGCGGAGGCCACCTAGAAATCGTCTCCCGCGAGACGAAGCGGGTAGCC
CAGCTCGTCAAACGCATCAGCGCCTTGGCAGAGCAACAAGAGAAGGGCAA
CCAAGAGACCATGAAGATGAGAGCCGAGCTGACGCTAACTCGACACCGCG
CGAAGGAACTGGAGGATCGGAACATCATCAACAGGGATACTCTCGTCGCG
AAGCTCGAACACGCCTTGGCAGAGCAACAAGAGAAGGGCAACCAAGAGAC
CATGAAGATGAGAGCCGAGCTGACGCTAACTCGACACCGCGCGAAGGAAC
TGGAGGATCGGAACATCATCAACAGGGATACTCTCGTCGCGAAGCTCGAA
CAAACCCAGAGAAGGTGCGCGGAAGAAATGGCCGTGCTAAAAGAGAAGGC
GAATCTTGCAGAGAGTTCTTGGCGGGCTAAACTGGCCCGGAAAAACCCAG
AGAAGGTGCGCGGAAGAAATGGCCGTGCTAAAAGAGAAGGCGAATCTTGC
AGAGAGTTCTTGGCGGGCTAAACTGGCCCGGAAAGACCATGATATGGAGA
TGCTGCCAATGCTGCGGCGGGAAGTAAAGCTGACCCATAACAAGTTGGCG
GAGGAAAAGACAGCAAGAGAAGAAGACTTATATCAGAGGGATGGCGAGAT
CACCACGCTCAAGGCGAAGGACCATGATATGGAGATGCTGCCAATGCTGC
GGCGGGAAGTAAAGCTGACCCATAACAAGTTGGCGGAGGAAAAGACAGCA
AGAGAAGAAGACTTATATCAGAGGGATGGCGAGATCACCACGCTCAAGGC
GAAGGTGAAAAAAATGGAGTTTTCCGCCGATGCTAGCGCAGGGGTGCTGC
TAAGAGCGCAGAACGAGTGCGATGATCTTAAGCGCCACCTAAATGCAGAG
AAGGTGAAAAAAATGGAGTTTTCCGCCGATGCTAGCGCAGGGGTGCTGCT
AAGAGCGCAGAACGAGTGCGATGATCTTAAGCGCCACCTAAATGCAGAGA
AGGCGGAACACACCGCGATTAAAGAGCTGTTTGATGAAGAGCAGTCACGC
TACGACAGGTGCCGGCGTAGCCTGGAAACTACGCGGGAGCGCCTCGCCGA
TTTGAGAGTTCGGCACAGCGAATTGCGGGCGGAAGTCGAGGCGGAACACA
CCGCGATTAAAGAGCTGTTTGATGAAGAGCAGTCACGCTACGACAGGTGC
CGGCGTAGCCTGGAAACTACGCGGGAGCGCCTCGCCGATTTGAGAGTTCG
GCACAGCGAATTGCGGGCGGAAGTCGAGGCGGCAGACGAGGCGGCGCAAG
GTGAGGCCGAGGAAGCAAACGACGCTCTAGCCGCGGCTAGACTGGAAATC
GAGCGGTTGCGAGGGTTGTTGGGAACAAGCAACACAGAGAGGTGAGCGGC
AGACGAGGCGGCGCAAGGTGAGGCCGAGGAAGCAAACGACGCTCTAGCCG
CGGCTAGACTGGAAATCGAGCGGTTGCGAGGGTTGTTGGGAACAAGCAAC
ACAGAGAGGTGA
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