mRNA_H-elongata_contig54075.12777.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig54075.12777.1
Unique NamemRNA_H-elongata_contig54075.12777.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig54075.12777.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig54075contigH-elongata_contig54075:922..3918 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score69.3
Seed ortholog evalue7e-09
Seed eggNOG ortholog2880.D7G1L0
EggNOG free text desc.endonuclease activity
EggNOG OGsKOG4197@1,KOG4197@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size2447
Cds size1848
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig54075.12777.1prot_H-elongata_contig54075.12777.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig54075 1061..3458 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930880.9023807-UTR-H-elongata_contig54075:921..10601622930880.9023807-UTR-H-elongata_contig54075:921..1060Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig54075 922..1060 +
1691679609.4143887-UTR-H-elongata_contig54075:921..10601691679609.4143887-UTR-H-elongata_contig54075:921..1060Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig54075 922..1060 +
1622930880.9609642-UTR-H-elongata_contig54075:3458..39181622930880.9609642-UTR-H-elongata_contig54075:3458..3918Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig54075 3459..3918 +
1691679609.4622078-UTR-H-elongata_contig54075:3458..39181691679609.4622078-UTR-H-elongata_contig54075:3458..3918Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig54075 3459..3918 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930880.9210029-CDS-H-elongata_contig54075:1060..28951622930880.9210029-CDS-H-elongata_contig54075:1060..2895Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54075 1061..2895 +
1691679609.4250596-CDS-H-elongata_contig54075:1060..28951691679609.4250596-CDS-H-elongata_contig54075:1060..2895Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54075 1061..2895 +
1622930880.94004-CDS-H-elongata_contig54075:3445..34581622930880.94004-CDS-H-elongata_contig54075:3445..3458Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54075 3446..3458 +
1691679609.4427497-CDS-H-elongata_contig54075:3445..34581691679609.4427497-CDS-H-elongata_contig54075:3445..3458Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54075 3446..3458 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig54075.12777.1

>prot_H-elongata_contig54075.12777.1 ID=prot_H-elongata_contig54075.12777.1|Name=mRNA_H-elongata_contig54075.12777.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=616bp
MIGTYAPSTISGGERVPLFTPSFGLAPLFPAPRRVSGTAYQMPSRLQSRG
AHILWASTTGDDRLSAASAARARVLQQQTAIADRRARQSKEQQRKQQKAG
NIRHRSSLGNELKDVLYFQSRDFGDRIKRMRTNDWEGVLRELKHAERALE
LRGFRVTMRIYATSIRHLAKCRRWKEAVGILDGIRAAGRSPNSNCLSAAI
DACRYARQWERAVSLLRQERKNGTGVDAFCYSSAIAACANAGQWELAVAL
LREMEATGIPPNVVTFNSSIKACGNAGRWREAVSLLREMESLGIKPSAIS
FNSAIAACHGGHWEEAVSLLREMVVKGYVPDVVTYNSAITACGGRWEEAV
SLLGEMEVEGITPDVISYSAAIKACGKGNQPEEAVALLREMVAQGIRPNI
VAFNSAITAVGEAGQWKNSMSLLREMEAEGITPDVISYSAAITACGNGAQ
PSKAVSLLKEMDARGISPNVISYSAAITACGNGGWPIEAVSLLREMAAKG
VSPNELTFNSAITAVGDTGRWMEAMSLFREMEAAGIAPSLISFNSAIESC
AIGGQSELAVSLLEEMASKGIARDIVSYQSAIKAHDLCIASAPLRLQRGC
LEAIAEPLQRTSFQA*
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mRNA from alignment at H-elongata_contig54075:922..3918+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig54075.12777.1 ID=mRNA_H-elongata_contig54075.12777.1|Name=mRNA_H-elongata_contig54075.12777.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2997bp|location=Sequence derived from alignment at H-elongata_contig54075:922..3918+ (Himanthalia elongata Himel1 dioecious)
ATCCACCTTCCTATCTCAGCTCCCGGCGGGATTGTGTAGCTAGTGTGACG
CTATTTATACGAAGAATAAATGTAAGCACCTTCATCGTGAGGTGCTTCTT
AGAATCCCGTGCTCGCGAGTGTACATTGCTCAAGTGCTAATGATAGGTAC
GTACGCCCCAAGCACGATTTCCGGCGGTGAGCGGGTGCCGTTGTTCACAC
CTTCATTCGGCCTAGCTCCCCTATTCCCCGCACCGAGGAGAGTTTCGGGA
ACCGCATATCAAATGCCTTCACGCTTGCAGAGTAGAGGCGCACATATTTT
GTGGGCCTCAACCACTGGAGACGATAGACTGTCGGCTGCATCTGCAGCGA
GGGCGCGAGTGCTTCAACAACAGACTGCCATCGCCGATCGCAGAGCCAGG
CAATCGAAAGAGCAGCAGCGGAAGCAGCAGAAGGCAGGAAATATACGGCA
CCGAAGTTCGTTGGGGAATGAATTGAAGGACGTCCTCTACTTTCAATCGC
GAGACTTCGGCGACAGGATCAAACGCATGCGGACGAATGACTGGGAGGGG
GTGCTCCGCGAGCTGAAGCATGCGGAGCGTGCGCTGGAGCTGAGGGGTTT
CAGAGTCACCATGCGCATATACGCCACCTCCATACGGCACCTGGCGAAGT
GTAGACGGTGGAAAGAGGCTGTGGGTATTCTGGACGGTATCCGAGCAGCG
GGTAGATCGCCAAACAGCAACTGCCTGAGCGCCGCAATCGATGCGTGCAG
GTACGCGCGGCAATGGGAGCGGGCCGTGTCTCTCCTTCGGCAAGAGCGAA
AGAACGGCACCGGTGTGGACGCCTTCTGCTATAGCTCCGCGATTGCAGCT
TGCGCTAATGCAGGTCAGTGGGAGCTGGCGGTTGCCTTGCTGAGGGAGAT
GGAAGCTACTGGCATCCCCCCAAACGTAGTGACATTCAACTCGTCCATCA
AAGCTTGTGGAAACGCGGGGAGGTGGCGAGAGGCCGTGTCCCTCCTCCGG
GAGATGGAATCGCTGGGTATAAAACCCTCAGCGATAAGCTTCAACTCCGC
AATCGCCGCTTGTCACGGAGGCCATTGGGAGGAGGCGGTGTCATTGTTAA
GGGAAATGGTTGTAAAGGGTTATGTACCAGATGTGGTGACCTATAACTCG
GCGATCACGGCATGCGGTGGGCGGTGGGAAGAAGCTGTTTCACTGTTGGG
AGAAATGGAGGTCGAGGGTATTACCCCAGACGTCATTTCGTACTCTGCAG
CCATCAAGGCTTGTGGAAAGGGTAACCAGCCGGAGGAAGCCGTGGCTTTG
CTGAGGGAGATGGTAGCGCAGGGTATCCGCCCAAACATTGTAGCTTTCAA
CTCAGCGATTACGGCTGTTGGCGAAGCGGGTCAGTGGAAAAACTCCATGT
CGCTTTTGCGGGAGATGGAGGCCGAGGGTATCACACCCGACGTCATTTCC
TACTCGGCAGCTATCACAGCATGTGGCAACGGAGCTCAGCCAAGCAAAGC
TGTTTCGCTGTTGAAGGAGATGGATGCTCGAGGTATCTCCCCCAATGTAA
TCTCTTATTCTGCAGCCATCACCGCTTGCGGGAACGGAGGGTGGCCAATA
GAGGCCGTGTCGTTGTTGAGAGAGATGGCAGCAAAAGGCGTCAGTCCAAA
CGAATTGACGTTCAACTCGGCCATCACGGCCGTTGGCGACACGGGAAGAT
GGATGGAGGCCATGTCGTTGTTCAGAGAGATGGAGGCCGCGGGCATAGCG
CCATCGCTAATAAGCTTCAACTCCGCGATCGAGTCGTGTGCTATTGGTGG
TCAGTCCGAGCTGGCCGTGTCTCTACTTGAAGAGATGGCATCGAAAGGTA
TCGCCCGCGATATTGTGAGCTACCAGTCGGCCATCAAAGCACACGATTTA
TGCATTGCGTCCGCGCCGCTGAGACTACAAAGGGGGTGTTTGGAGGCAAT
AGCAGAACCGCTGCAACGCACGAGGTGAGATTTTCGGGGTAGTTGGTCAC
GAGCTTTCTGGAGTATTTTCTCTCCGGTTTCTAGGTATCCGTCTAGTCTT
TCCGGCGATGTGAGGCATTGGGGGTGTGTATGCCTTTTTTATTCAAGCTG
TGTACATGCTATTTATAGGAAGCATGTCTCCCCCGCCAACCGTTTTGAAA
TATCGTTGTTGGATGGTGGTTGTCCGGCCAATGCTCCTGTATGATTCCCG
GGGTCGTGTCTATCGCCGATCGTTGCGGTCAAGGAAAGTTGACCAGTATA
ATTTTCTGGAGACGTGCCAACGAAGTGAATTTGAGGTAAGGCTGGTTGCC
GCATCACCGAAACGAAAGACGCCACTTCAATCCCGTGTCGCTGAATGTGC
GTACGATCCAGACGATTGATTATTGCTTCTTAGATTCGTGTCACCTTTAT
TTTCTCTTTACTCCAAAGGGAGCATTTCCGCAATGGCCTCCTTCCTGATG
CCCGTGAGCGCGCTTTCCTTTTTAAATCGTCCCATTTTCGCTCTCTCTGG
TTTCGCTCTTCTGGTTTGAGTCAGTTTTCAGGCGTGAAGGACGAGGTCAA
CGATACTTGGTTGATAATTTTTATAGGGTGGACCTTTCGCGTTACATATT
ATGCCGGATCCACCGACCGTTTACAACTGTGGAATGACCATGGATTTATA
TAGGAGGATGGCATACCTCGTGTACCTAGGTAGCGTTTTTGGTTTCATAC
GTACGTGGCTTGCGACCAGCTGAATCACAAGGTAGCTTCTTTCCCGCCGC
GGTGCGAGTGGAACAGCTGCAAGGCCATTATAAATTCAGTCCTTAGAGTT
TCGATCGGCCGTTAGCCACAACCAGAGGTGGAAGCATCGGAGAGCCCCGA
GAAAGTAGTCCAACGCCAGCTTTCCGCAATAATGAGTTCATCGGTGAGCG
GAATAGTGTCAGGGCTCACATTATATCCTGTACTTAACCATCGAGAGTGG
GATATAGAGAGGGGGGGGGGATGAGTAACTCTGTGAGCTATGGGGTA
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Coding sequence (CDS) from alignment at H-elongata_contig54075:922..3918+

>mRNA_H-elongata_contig54075.12777.1 ID=mRNA_H-elongata_contig54075.12777.1|Name=mRNA_H-elongata_contig54075.12777.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=3696bp|location=Sequence derived from alignment at H-elongata_contig54075:922..3918+ (Himanthalia elongata Himel1 dioecious)
ATGATAGGTACGTACGCCCCAAGCACGATTTCCGGCGGTGAGCGGGTGCC
GTTGTTCACACCTTCATTCGGCCTAGCTCCCCTATTCCCCGCACCGAGGA
GAGTTTCGGGAACCGCATATCAAATGCCTTCACGCTTGCAGAGTAGAGGC
GCACATATTTTGTGGGCCTCAACCACTGGAGACGATAGACTGTCGGCTGC
ATCTGCAGCGAGGGCGCGAGTGCTTCAACAACAGACTGCCATCGCCGATC
GCAGAGCCAGGCAATCGAAAGAGCAGCAGCGGAAGCAGCAGAAGGCAGGA
AATATACGGCACCGAAGTTCGTTGGGGAATGAATTGAAGGACGTCCTCTA
CTTTCAATCGCGAGACTTCGGCGACAGGATCAAACGCATGCGGACGAATG
ACTGGGAGGGGGTGCTCCGCGAGCTGAAGCATGCGGAGCGTGCGCTGGAG
CTGAGGGGTTTCAGAGTCACCATGCGCATATACGCCACCTCCATACGGCA
CCTGGCGAAGTGTAGACGGTGGAAAGAGGCTGTGGGTATTCTGGACGGTA
TCCGAGCAGCGGGTAGATCGCCAAACAGCAACTGCCTGAGCGCCGCAATC
GATGCGTGCAGGTACGCGCGGCAATGGGAGCGGGCCGTGTCTCTCCTTCG
GCAAGAGCGAAAGAACGGCACCGGTGTGGACGCCTTCTGCTATAGCTCCG
CGATTGCAGCTTGCGCTAATGCAGGTCAGTGGGAGCTGGCGGTTGCCTTG
CTGAGGGAGATGGAAGCTACTGGCATCCCCCCAAACGTAGTGACATTCAA
CTCGTCCATCAAAGCTTGTGGAAACGCGGGGAGGTGGCGAGAGGCCGTGT
CCCTCCTCCGGGAGATGGAATCGCTGGGTATAAAACCCTCAGCGATAAGC
TTCAACTCCGCAATCGCCGCTTGTCACGGAGGCCATTGGGAGGAGGCGGT
GTCATTGTTAAGGGAAATGGTTGTAAAGGGTTATGTACCAGATGTGGTGA
CCTATAACTCGGCGATCACGGCATGCGGTGGGCGGTGGGAAGAAGCTGTT
TCACTGTTGGGAGAAATGGAGGTCGAGGGTATTACCCCAGACGTCATTTC
GTACTCTGCAGCCATCAAGGCTTGTGGAAAGGGTAACCAGCCGGAGGAAG
CCGTGGCTTTGCTGAGGGAGATGGTAGCGCAGGGTATCCGCCCAAACATT
GTAGCTTTCAACTCAGCGATTACGGCTGTTGGCGAAGCGGGTCAGTGGAA
AAACTCCATGTCGCTTTTGCGGGAGATGGAGGCCGAGGGTATCACACCCG
ACGTCATTTCCTACTCGGCAGCTATCACAGCATGTGGCAACGGAGCTCAG
CCAAGCAAAGCTGTTTCGCTGTTGAAGGAGATGGATGCTCGAGGTATCTC
CCCCAATGTAATCTCTTATTCTGCAGCCATCACCGCTTGCGGGAACGGAG
GGTGGCCAATAGAGGCCGTGTCGTTGTTGAGAGAGATGGCAGCAAAAGGC
GTCAGTCCAAACGAATTGACGTTCAACTCGGCCATCACGGCCGTTGGCGA
CACGGGAAGATGGATGGAGGCCATGTCGTTGTTCAGAGAGATGGAGGCCG
CGGGCATAGCGCCATCGCTAATAAGCTTCAACTCCGCGATCGAGTCGTGT
GCTATTGGTGGTCAGTCCGAGCTGGCCGTGTCTCTACTTGAAGAGATGGC
ATCGAAAGGTATCGCCCGCGATATTGTGAGCTACCAGTCGGCCATCAAAG
CACACGATTTATGCATTGCGTCCGCGCCGCTGAGACTACAAAGGGGGTGT
TTGGAGGCAATAGCAGAACCGCTGCAACGCACGAGATGATAGGTACGTAC
GCCCCAAGCACGATTTCCGGCGGTGAGCGGGTGCCGTTGTTCACACCTTC
ATTCGGCCTAGCTCCCCTATTCCCCGCACCGAGGAGAGTTTCGGGAACCG
CATATCAAATGCCTTCACGCTTGCAGAGTAGAGGCGCACATATTTTGTGG
GCCTCAACCACTGGAGACGATAGACTGTCGGCTGCATCTGCAGCGAGGGC
GCGAGTGCTTCAACAACAGACTGCCATCGCCGATCGCAGAGCCAGGCAAT
CGAAAGAGCAGCAGCGGAAGCAGCAGAAGGCAGGAAATATACGGCACCGA
AGTTCGTTGGGGAATGAATTGAAGGACGTCCTCTACTTTCAATCGCGAGA
CTTCGGCGACAGGATCAAACGCATGCGGACGAATGACTGGGAGGGGGTGC
TCCGCGAGCTGAAGCATGCGGAGCGTGCGCTGGAGCTGAGGGGTTTCAGA
GTCACCATGCGCATATACGCCACCTCCATACGGCACCTGGCGAAGTGTAG
ACGGTGGAAAGAGGCTGTGGGTATTCTGGACGGTATCCGAGCAGCGGGTA
GATCGCCAAACAGCAACTGCCTGAGCGCCGCAATCGATGCGTGCAGGTAC
GCGCGGCAATGGGAGCGGGCCGTGTCTCTCCTTCGGCAAGAGCGAAAGAA
CGGCACCGGTGTGGACGCCTTCTGCTATAGCTCCGCGATTGCAGCTTGCG
CTAATGCAGGTCAGTGGGAGCTGGCGGTTGCCTTGCTGAGGGAGATGGAA
GCTACTGGCATCCCCCCAAACGTAGTGACATTCAACTCGTCCATCAAAGC
TTGTGGAAACGCGGGGAGGTGGCGAGAGGCCGTGTCCCTCCTCCGGGAGA
TGGAATCGCTGGGTATAAAACCCTCAGCGATAAGCTTCAACTCCGCAATC
GCCGCTTGTCACGGAGGCCATTGGGAGGAGGCGGTGTCATTGTTAAGGGA
AATGGTTGTAAAGGGTTATGTACCAGATGTGGTGACCTATAACTCGGCGA
TCACGGCATGCGGTGGGCGGTGGGAAGAAGCTGTTTCACTGTTGGGAGAA
ATGGAGGTCGAGGGTATTACCCCAGACGTCATTTCGTACTCTGCAGCCAT
CAAGGCTTGTGGAAAGGGTAACCAGCCGGAGGAAGCCGTGGCTTTGCTGA
GGGAGATGGTAGCGCAGGGTATCCGCCCAAACATTGTAGCTTTCAACTCA
GCGATTACGGCTGTTGGCGAAGCGGGTCAGTGGAAAAACTCCATGTCGCT
TTTGCGGGAGATGGAGGCCGAGGGTATCACACCCGACGTCATTTCCTACT
CGGCAGCTATCACAGCATGTGGCAACGGAGCTCAGCCAAGCAAAGCTGTT
TCGCTGTTGAAGGAGATGGATGCTCGAGGTATCTCCCCCAATGTAATCTC
TTATTCTGCAGCCATCACCGCTTGCGGGAACGGAGGGTGGCCAATAGAGG
CCGTGTCGTTGTTGAGAGAGATGGCAGCAAAAGGCGTCAGTCCAAACGAA
TTGACGTTCAACTCGGCCATCACGGCCGTTGGCGACACGGGAAGATGGAT
GGAGGCCATGTCGTTGTTCAGAGAGATGGAGGCCGCGGGCATAGCGCCAT
CGCTAATAAGCTTCAACTCCGCGATCGAGTCGTGTGCTATTGGTGGTCAG
TCCGAGCTGGCCGTGTCTCTACTTGAAGAGATGGCATCGAAAGGTATCGC
CCGCGATATTGTGAGCTACCAGTCGGCCATCAAAGCACACGATTTATGCA
TTGCGTCCGCGCCGCTGAGACTACAAAGGGGGTGTTTGGAGGCAATAGCA
GAACCGCTGCAACGCACGAGTTTTCAGGCGTGATTTTCAGGCGTGA
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