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Homology
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| IPR002885 | Pentatricopeptide repeat | PFAM | PF01535 | PPR | coord: 230..258
e-value: 9.5E-4
score: 19.3 |
| IPR002885 | Pentatricopeptide repeat | PFAM | PF13812 | PPR_3 | coord: 387..447
e-value: 2.8E-12
score: 46.5
coord: 318..377
e-value: 1.2E-9
score: 38.1
coord: 526..584
e-value: 3.6E-6
score: 27.0
coord: 456..517
e-value: 2.3E-9
score: 37.2 |
| IPR002885 | Pentatricopeptide repeat | PFAM | PF13041 | PPR_2 | coord: 261..308
e-value: 1.0E-10
score: 41.7 |
| IPR002885 | Pentatricopeptide repeat | TIGRFAM | TIGR00756 | TIGR00756 | coord: 264..297
e-value: 7.8E-8
score: 30.0
coord: 229..263
e-value: 5.6E-7
score: 27.3
coord: 541..574
e-value: 0.001
score: 17.1
coord: 436..470
e-value: 1.3E-5
score: 23.0
coord: 366..400
e-value: 6.3E-8
score: 30.3
coord: 401..435
e-value: 5.8E-4
score: 17.9
coord: 307..332
e-value: 1.1E-4
score: 20.1
coord: 471..505
e-value: 5.6E-5
score: 21.0
coord: 333..365
e-value: 3.4E-4
score: 18.6
coord: 507..539
e-value: 3.1E-5
score: 21.8 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 469..503
score: 10.676 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 539..573
score: 9.076 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 504..538
score: 11.586 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 192..226
score: 6.5 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 297..330
score: 8.046 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 262..296
score: 13.11 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 434..468
score: 10.611 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 364..398
score: 12.2 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 399..433
score: 10.764 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 227..261
score: 11.805 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 157..191
score: 8.111 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 331..363
score: 7.815 |
| IPR011990 | Tetratricopeptide-like helical domain superfamily | GENE3D | 1.25.40.10 | | coord: 309..445
e-value: 8.7E-44
score: 152.1
coord: 446..597
e-value: 1.0E-37
score: 132.1
coord: 158..308
e-value: 6.6E-40
score: 139.3 |
| None | No IPR available | PANTHER | PTHR46128 | FAMILY NOT NAMED | coord: 267..414
coord: 117..282
coord: 487..584
coord: 379..484 |
Alignments
The following features are aligned
Analyses
This polypeptide is derived from or has results from the following analyses
Relationships
This polypeptide derives from the following mRNA feature(s):
Sequences
The following sequences are available for this feature:
polypeptide sequence >prot_H-elongata_contig54075.12777.1 ID=prot_H-elongata_contig54075.12777.1|Name=mRNA_H-elongata_contig54075.12777.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=616bp
MIGTYAPSTISGGERVPLFTPSFGLAPLFPAPRRVSGTAYQMPSRLQSRG
AHILWASTTGDDRLSAASAARARVLQQQTAIADRRARQSKEQQRKQQKAG
NIRHRSSLGNELKDVLYFQSRDFGDRIKRMRTNDWEGVLRELKHAERALE
LRGFRVTMRIYATSIRHLAKCRRWKEAVGILDGIRAAGRSPNSNCLSAAI
DACRYARQWERAVSLLRQERKNGTGVDAFCYSSAIAACANAGQWELAVAL
LREMEATGIPPNVVTFNSSIKACGNAGRWREAVSLLREMESLGIKPSAIS
FNSAIAACHGGHWEEAVSLLREMVVKGYVPDVVTYNSAITACGGRWEEAV
SLLGEMEVEGITPDVISYSAAIKACGKGNQPEEAVALLREMVAQGIRPNI
VAFNSAITAVGEAGQWKNSMSLLREMEAEGITPDVISYSAAITACGNGAQ
PSKAVSLLKEMDARGISPNVISYSAAITACGNGGWPIEAVSLLREMAAKG
VSPNELTFNSAITAVGDTGRWMEAMSLFREMEAAGIAPSLISFNSAIESC
AIGGQSELAVSLLEEMASKGIARDIVSYQSAIKAHDLCIASAPLRLQRGC
LEAIAEPLQRTSFQA* back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR002885 | Pentatricopeptide_repeat |
| IPR011990 | TPR-like_helical_dom_sf |
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