mRNA_H-elongata_contig53968.12760.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig53968.12760.1 vs. uniprot
Match: D7FS84_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FS84_ECTSI) HSP 1 Score: 269 bits (687), Expect = 2.370e-80 Identity = 139/314 (44.27%), Postives = 190/314 (60.51%), Query Frame = 1
Query: 208 LNKAGGSTVKYMLSPWIEEHNISLGLYDSTQWSSGPEFAQQFLQDKYMITWGAYTDGLRPHGG---QNCKWFTIFRHPIERLVSAYFYCRKGAVDGVCGTHIV--NAQEVDLVTFARHWGNFGLRQFMYG-----DIPVSAVAYDSREKDSRYF-----PAWWKMKHYIE-----------GLAINSSAVAATAAASATENLMSIEYPALKTFLAPVLERLSTRYAAVGTIEDWPTTLRLFDAALNLPSFDWAKPFHRIGTKNSNNAFLGEAEDALRSARTNPDIYEFIRLDMLLYEHALEVHAKQVEDYGIGD 1071
+NKAGGSTVKYML+PW + N+++GLYDS QW G +FAQ FL D+ + WGAYT+GLRP GG + CKWFTIFRHPI RLVSAYFYC+K DG+C T + NA + DL FA HWG+FGLRQF ++ + V YD+ + Y P W+++K Y++ + S AA+ AA+ + L PV E L+ YAAVG +E W T+L LF+ AL +P FDW + F IG KNS+ F E + L + T+P + ++ LD+LLY++A+ VH +QV+ YG+G+
Sbjct: 1 MNKAGGSTVKYMLAPWTKAQNVTVGLYDSPQWLEGKDFAQDFLGDENSLMWGAYTEGLRPFGGLGLRECKWFTIFRHPIPRLVSAYFYCKKKPQDGLCATVALDANADDTDLYAFAEHWGDFGLRQFALAFVLPEELLANKVKYDATGICTPYHGKRSCPGWYELKLYLQQQLDEQEQGEGSRGWDGSGAAASGAATISH------------LLQPVQELLTNEYAAVGVLEQWETSLLLFNEALGMPGFDWPETFGSIGKKNSDGTFHNEEAEMLLRSWTDPRLRRYLSLDLLLYDYAVSVHNQQVDKYGLGE 302
BLAST of mRNA_H-elongata_contig53968.12760.1 vs. uniprot
Match: A0A6H5JY77_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JY77_9PHAE) HSP 1 Score: 267 bits (682), Expect = 4.220e-79 Identity = 133/317 (41.96%), Postives = 190/317 (59.94%), Query Frame = 1
Query: 148 PEVSLTEVSPPPR-DCWIFNHLNKAGGSTVKYMLSPWIEEHNISLGLYDSTQWSSGPEFAQQFLQDKYMITWGAYTDGLRPHGGQNCKWFTIFRHPIERLVSAYFYCRKGAVDGVCGTHIVNAQEVDLVTFARHWGNFGLRQFMYGDIP---------VSAVAYDSREKDSRYFPAWWKMKHYIEGLAINSSAVAATAAASATENLMSIEYPALKTFLAPVLERLSTRYAAVGTIEDWPTTLRLFDAALNLPSFDWAKPFHRIGTKNSNNA-FLGEAEDALRSARTNPDIYEFIRLDMLLYEHALEVHAKQVEDYGI 1065
P E+ P + DCW+F+H+NK+GG TV+ M+ P++ E +S L+D +WSSG +A+ F+++ + T+G YT+GLR + ++CKWFT+FRHP+ R+VSAYFYC++ D +C +++A +VDL+TFA HWGN+GLRQF I VS +R PAW++ KHY+ L T S L FL+ E LSTRYAAVG IE+W ++ LF+ LNL FDW K F + G KNS + F ++ AL++A +P++ +FI LD+LLY+HAL VH QV D GI
Sbjct: 37 PVQGAQELKPTSKCDCWVFSHMNKSGGMTVRKMIMPFLTEKGVSTALFDDIEWSSGRSYAETFVKENAVFTYGGYTEGLRMYDDRDCKWFTVFRHPVSRVVSAYFYCQRAHHDQLCAAVVLDASKVDLLTFAEHWGNYGLRQFALASIKAEDVFHNEVVSEFCQQARGHGDVCIPAWYRQKHYLH-LPHQDDFCGPTQPESG-----------LAQFLSSAQETLSTRYAAVGIIEEWDNSMELFNRVLNLRRFDWVKEFQKSGKKNSGGSQFETASKSALKAAWHSPELKKFIWLDILLYDHALSVHRSQVADLGI 341
BLAST of mRNA_H-elongata_contig53968.12760.1 vs. uniprot
Match: A0A6H5JQY7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQY7_9PHAE) HSP 1 Score: 211 bits (538), Expect = 1.240e-58 Identity = 122/327 (37.31%), Postives = 178/327 (54.43%), Query Frame = 1
Query: 103 GATMWGVEAEGGTDIPEVSLTEVSPPPRDCWIFNHLNKAGGSTVKYMLSPWIEEHNISLGLYDSTQWSSGPEFAQQFLQDKYMITWGAYTDGLRPHGGQ-NCKWFTIFRHPIERLVSAYFYCRKGAVDGVCGTHIVNAQEVDLVTFARHWGNFGLRQFMYG-----DIPVSAVAYDSREKDSRYFPAWWKMKHYIEGLAINSSAVAATAAASATENLMSIEYPALKTFLAPVLERLSTRYAAVGTIEDWPTTLRLFDAALNLPSFDWAKPFHRIGTKNSNNAFLGEAEDALRSARTNPDIYEFIRLDMLLYEHALEVHAKQVEDYGI 1065
GA + A G+D PE+SL SPP CW++ +NKAGG++++ M+ + N ++G + TQ+++G QQ L + + WGAYT+GLRP+ CKWFT+ RHPI RLVSA+ YC D +C T I ++ D+ FA HWGN G+ QF DI V+ V P W+K K Y EG S + +A S + ++ P + L PV E L ++YAAVG +E W T++ LFD AL LP F+W +N +++ D L ++ T+P + + + LD+LLYEHA VH Q+ YG+
Sbjct: 13 GALLELAAANVGSDSPELSL---SPPA--CWVYTDMNKAGGTSIRRMIKDYAAATNTTVGEFTHTQYNAGDRGVQQILDRRPSLIWGAYTEGLRPYATVLGCKWFTMVRHPIARLVSAFNYCGIVPSDQLCATRIHKPEDGDIYDFAEHWGNHGVVQFALAFEDLNDILVTEVK----------SPPWYKAKLYFEGRLGPSGKTSTSANISTKDVCQNVWMPEI---LQPVEELLRSKYAAVGILEQWETSMMLFDHALQLPGFNWTSTSASSTPRNVHDSKA--KNDLLVASMTDPVLKQILWLDILLYEHACSVHKAQLSRYGL 319
BLAST of mRNA_H-elongata_contig53968.12760.1 vs. uniprot
Match: D7G715_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G715_ECTSI) HSP 1 Score: 211 bits (536), Expect = 2.050e-57 Identity = 120/332 (36.14%), Postives = 170/332 (51.20%), Query Frame = 1
Query: 142 DIPEVSLTEVSPPPRDCWIFNHLNKAGGSTVKYML-SPWIEEHNISLGLYDSTQWSSGPEFAQQFLQDK-----YMITWGAYTDGLR------PHGGQN-CKWFTIFRHPIERLVSAYFYCRKGAVDGVCGTHIVNAQEVDLVTFARHWGNFGLRQFMYGDI-----------PVSAVAYDSREKDSRYFPAWWKMKHYIEGLAINSSAVAATAAASATENLMSIEYPALKTFLAPVLERLSTRYAAVGTIEDWPTTLRLFDAALNLPSFDWAKPFHRIGTKNSNNAFLGEAEDALRSARTNPDIYEFIRLDMLLYEHALEVHAKQVEDYGI 1065
D P +++ + CWIFNHL KAGG+TVK +L W E YDS QW G +A+ + G Y + LR P + C+WFT+FRHP+ RLVSAY+YCR+ D +C + V+++ VDLVTFARHWGNF LRQF G + P A + P W+ +K ++ + S VA + T +EY PV++ L YA VG +EDW TL LFD+AL++P W + F R G N + F GE +D L+ A ++P+I + + LD+ LY A+++ +Q YGI
Sbjct: 72 DAPALNIEDSPRSENRCWIFNHLQKAGGTTVKRLLFDSWGSESTT----YDSYQWKKGQGYAESVAASLASPAGWSAAAGGYLEALRRTPAFQPDDERTPCRWFTVFRHPVSRLVSAYYYCREDPSDQLCASEFVSSRNVDLVTFARHWGNFALRQFALGFVSHDKVKDFLVSPNGGGAMGLTAEQVELMPGWYMLKLFLN----DRSGVADDTSPEGTR----LEY-----MFRPVVDLLRDNYAVVGILEDWNATLSLFDSALDMPGMTWREEFERSGKLNVDTRFKGEKQDVLQQALSDPEIVKHLSLDLRLYGQAVDIFNQQRHSYGI 386
BLAST of mRNA_H-elongata_contig53968.12760.1 vs. uniprot
Match: A0A6H5JNJ0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNJ0_9PHAE) HSP 1 Score: 208 bits (529), Expect = 2.480e-57 Identity = 112/310 (36.13%), Postives = 171/310 (55.16%), Query Frame = 1
Query: 136 GTDIPEVSLTEVSPPPRDCWIFNHLNKAGGSTVKYMLSPWIEEHNISLGLYDSTQWSSGPEFAQQFLQDKYMITWGAYTDGLRPHGGQNCKWFTIFRHPIERLVSAYFYCRKGAVDGVCGTHIVNAQEVDLVTFARHWGNFGLRQFMYGDIPVSAVAYDSREKDSRYFPAWWKMKHYIEGLAINSSAVAATAAASATENLMSIEYPALKTFLAPVLERLSTRYAAVGTIEDWPTTLRLFDAALNLPSFDWAKPFHRIGTKNSNNAFLGEAEDALRSARTNPDIYEFIRLDMLLYEHALEVHAKQVEDYGI 1065
G +PE+SL+ + CW+F H NKAGG+TVK L + E N ++ L S ++ G + Q L DK ++ G Y +GLR Q CKWFT+ RHPI RL+SA++YC G D +C +I ++ D+ FA+HWGN+ L QF G + + + E D+ PAW+K K Y EG ++ + + S+ P + L PV E L + YAAVG +E W ++ LFD AL +P F+W + + S N + E + L +A T+P + +++ LD+LLYE+A +H +Q+ Y +
Sbjct: 24 GHTLPELSLSTPT-----CWVFTHNNKAGGTTVKTHLRNYAESRNETVALCHSDWYARGDKGIQDLLNDKPVLIAGGYAEGLRTSAFQGCKWFTMMRHPIARLISAFYYCSGGNRDQLCAANIHKPEDGDIYDFAKHWGNYALLQFALGVVDQHEIF--AEEVDA---PAWFKAKLYFEGRLGYPGNMSTATNRTTHDEWQSVWIPDI---LQPVEELLRSNYAAVGILEHWQRSMMLFDHALEIPGFNWTVASASLSPRKSQNKIV-EKKAMLAAAMTDPVLRQYVWLDLLLYEYACSLHEEQLRRYDL 319
BLAST of mRNA_H-elongata_contig53968.12760.1 vs. uniprot
Match: D7FWQ3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWQ3_ECTSI) HSP 1 Score: 211 bits (536), Expect = 9.920e-57 Identity = 117/317 (36.91%), Postives = 170/317 (53.63%), Query Frame = 1
Query: 181 PRDCWIFNHLNKAGGSTVKYMLSPWIEEHNISLGLYDSTQWSSGPEFAQQF-----LQDKYMITWGAYTDGLRPHG--GQNCKWFTIFRHPIERLVSAYFYCRKGAVDGVCGTHIVNAQEVDLVTFARHWGNFGLRQFMYGDIPVSAV--------AYDSREKDSRYFPAWWKMKHYIE-------GLAINSSAVAATAAASATENLMSIEYPALKTFLAPVLERLSTRYAAVGTIEDWPTTLRLFDAALNLPSFDWAKPFHRIGTKNSNNAFLGEAEDALRSARTNPDIYEFIRLDMLLYEHALEVHAKQVEDYGI 1065
P CW+F HL K GGSTVKYML + +YDS QW G + + F + + + G YT+ LR C++FT+FRHPI R+VSAYFYCR D C + +V+A++VDL+TFA+HWGNF +RQF G +P V A + D + W+++K Y+E G+ S A+ A+AT +E P L L P ++ + + Y AVG +E W TTL LFD AL +P W F G + + + L+ A T+ ++ +++RLD+LLYEHA++V +Q YG+
Sbjct: 153 PDQCWVFMHLQKCGGSTVKYMLR---RSYGSRYSIYDSNQWKLGDDISANFGVKLARGETWNVMAGGYTEALRRSEPVDAGCRFFTLFRHPIARMVSAYFYCRSTLGDAACASEVVDAKDVDLLTFAKHWGNFAVRQFALGFVPSDGVQEYIRTPEAQALHDFDLKKIAGWYQLKMYLERPEKGDWGVPGQSEAMTVEHDAAAT-----LEAP-LYDLLQPAMDLIRSGYVAVGILEQWNTTLHLFDHALEIPGMYWGAQFAEGGKQRVDYKNKRLESETLKQAWTDSELKKYMRLDLLLYEHAVDVFHEQARGYGL 460
BLAST of mRNA_H-elongata_contig53968.12760.1 vs. uniprot
Match: D7G716_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G716_ECTSI) HSP 1 Score: 204 bits (518), Expect = 3.280e-54 Identity = 119/319 (37.30%), Postives = 176/319 (55.17%), Query Frame = 1
Query: 154 VSLTEVSPP-PRDCWIFNHLNKAGGSTVKYMLSPWIEEHNISLGLYDSTQWSSGPEFAQQF-----LQDKYMITWGAYTDGLRPHG--GQNCKWFTIFRHPIERLVSAYFYCRKGAVDGVCGTHIVNAQEVDLVTFARHWGNFGLRQFMYGDIPVSAVAYDSREKDSRYFPAWWKMKHYIE-------GLAINSSAVAATAAASATENLMSIEYPALKTFLAPVLERLSTRYAAVGTIEDWPTTLRLFDAALNLPSFDWAKPFHRIGTKNSNNAFLGEAEDALRSARTNPDIYEFIRLDMLLYEHALEVHAKQVEDYGI 1065
V+ T SP P CW+F HL K GGSTVK +L + +YDS +W G EF+ +F L DK+ + G YT+ LR G C++FT+FRHPI R+VSAYFYCR + D C + ++ A++VDL+TFA+HWGNF LRQF G +P D +E +++K Y+E G+ A+ A A+AT + E L P ++ + Y AVG +E W TTLRLFD L++P +W + F G + + + L+ A T+ ++ +++RLD+LLYEHA++V +Q +G+
Sbjct: 164 VAATVQSPASPGQCWVFMHLQKCGGSTVKDLLE---DRWGSRFFIYDSMRWKFGDEFSAKFGAKLALGDKWNVMTGGYTEALRLSEPVGAGCRFFTLFRHPIARMVSAYFYCRSVSGDVACASEVMQAKDVDLLTFAKHWGNFALRQFALGFVPSD----DVQE---------YQLKMYLERPQKEDGGVLGQREAMTAHQDAAATPDAPLYE------LLQPAMDLVRDGYVAVGILEQWNTTLRLFDHTLDMPVMNWEEQFAESGKHHVDIVNKQLEIETLQQAWTDSELKKYMRLDLLLYEHAVDVFHQQARSHGL 460
BLAST of mRNA_H-elongata_contig53968.12760.1 vs. uniprot
Match: A0A6H5JQM0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQM0_9PHAE) HSP 1 Score: 168 bits (426), Expect = 5.830e-41 Identity = 101/298 (33.89%), Postives = 149/298 (50.00%), Query Frame = 1
Query: 190 CWIFNHLNKAGGSTVKYMLSP-WIEEHNISLGLYDSTQWSSGPEFAQQFLQDKYMITWGAYTDGLRPHGGQNCKWFTIFRHPIERLVSAYFYCRKGAVDGVCGTHIVNAQEVDLVTFARHWGNFGLRQFMYGDIPVSAVAYDSREKDSRYFPA-WWKMKHYIEGLAINSSAVAATAAASATENLMSIEYPALKTFLAPVLERLSTRYAAVGTIEDWPTTLRLFDAALNLPSFDWAKPFHRIG----TKNSNNAFLGEAEDALRSARTNPDIYEFIRLDMLLYEHALEVHAKQVEDYGI 1065
CWIF H++K+G S + + + W ++ + +D+ QW G FA + + + G + LR H ++CKW TIFRHPI RL+SAY +C + D VC + LV FA WGNF +RQF + SAV + ++ +R + W+ +K Y+ I V L++ L PV LST+YAAVG ++ TT+ LF AL++ DW+ + +G K + + E+E R A NP I +RLDM LYEHA+ V QV +GI
Sbjct: 273 CWIFMHMDKSGASGARRVATERWRKDELV----FDTVQWRRGDGFAADVMASHWKLLHGGCVESLRNHKERSCKWLTIFRHPIARLLSAYHHCLEAPKDPVCPP----TESTGLVVFAELWGNFAMRQFALESVSPSAVKEWAAQRQARTGTSMWYLVKEYLARGGIAEDEV-------------------LESMLEPVKGLLSTQYAAVGIAQELETTMVLFSKALSMEGLDWSSSWATLGINEEVKQDSEYDIAESEP-FRQALENPRIVSALRLDMSLYEHAMHVFKDQVAQFGI 542
BLAST of mRNA_H-elongata_contig53968.12760.1 vs. uniprot
Match: A0A6H5L061_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L061_9PHAE) HSP 1 Score: 155 bits (392), Expect = 2.280e-39 Identity = 85/219 (38.81%), Postives = 124/219 (56.62%), Query Frame = 1
Query: 421 FRHPIERLVSAYFYCRKGAVDGVCGTHIVNAQEVDLVTFARHWGNFGLRQFMYGDIPVSAVAYDSREK--DSR--YFPAWWKMKHYIEGLAINSSAVAATAAASATENLMSIEYPALKTFLAPVLERLSTRYAAVGTIEDWPTTLRLFDAALNLPSFDWAKPFHRIGTKNSNNAFLGEAEDALRSARTNPDIYEFIRLDMLLYEHALEVHAKQVEDYGI 1065
++ PI RLVSAYFYC++ D +C + ++ A DL TFA+HWGN+GLRQF + V +E+ D R FP W+++K Y E A A+ +L A+ L PV + LS Y+AVG +E W T++ LF+ AL +PSF+W +G KN + E ALR+A +P + + + LD+ LY+HA+ VH KQVE++GI
Sbjct: 18 YKCPIPRLVSAYFYCKQNGWDELCASMVLKAGNTDLHTFAKHWGNYGLRQFSLAFVGAEDVFAAEQERGIDGRPVMFPGWYRVKEYFENQFDVEQERALMQETGASNDL------AMSYLLQPVEDLLSRNYSAVGILEKWETSMTLFNKALKVPSFNWQTASRNLGRKNVDKRLHDEEAHALRAAWDDPVLAKTLWLDIFLYDHAVAVHNKQVEEHGI 230
BLAST of mRNA_H-elongata_contig53968.12760.1 vs. uniprot
Match: D8LU75_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU75_ECTSI) HSP 1 Score: 151 bits (382), Expect = 1.360e-37 Identity = 96/292 (32.88%), Postives = 143/292 (48.97%), Query Frame = 1
Query: 208 LNKAGGSTVKYMLSP-WIEEHNISLGLYDSTQWSSGPEFAQQFLQDKYMITWGAYTDGLRPHGGQNCKWFTIFRHPIERLVSAYFYCRKGAVDGVCGTHIVNAQEVDLVTFARHWGNFGLRQFMYGDIPVSAVAYDSREKDSRYFPA-WWKMKHYIEGLAINSSAVAATAAASATENLMSIEYPALKTFLAPVLERLSTRYAAVGTIEDWPTTLRLFDAALNLPSFDWAKPFHRIGT----KNSNNAFLGEAEDALRSARTNPDIYEFIRLDMLLYEHALEVHAKQVEDYGI 1065
++K+G S + + + W ++ + +D+ QW G FA + ++ + G + LR H G++CKW TIFRHPI RL+SAY +C D VC + L FA WGNF +RQF + SAV + ++ +R + W+ +K Y+ I V L + L PV LST+YAAVG ++ TT+ LF AL++ DW+ + +G K + + E+E R A NP I +RLDM LYEHA+ V QV +GI
Sbjct: 1 MDKSGASGARRVATEQWRKDELV----FDTVQWRRGDGFAADVMASRWKLLHGGCVESLRNHKGRSCKWITIFRHPIARLLSAYDHCLGAPKDPVCPP----TESTGLAAFAELWGNFAMRQFALAAVSPSAVKEWAAQRQARTGTSMWYLVKEYLARGGIAEDEV-------------------LGSKLEPVKGLLSTQYAAVGIAQELKTTMVLFSKALSMEGLDWSSSWATLGINEEDKQDSEYDITESEP-FRQALENPRIVSALRLDMSLYEHAVHVFKDQVAQFGI 264 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig53968.12760.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 23
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig53968.12760.1 >prot_H-elongata_contig53968.12760.1 ID=prot_H-elongata_contig53968.12760.1|Name=mRNA_H-elongata_contig53968.12760.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=348bp MGWWPRRLRTGFVMVLLIICKNKGATMWGVEAEGGTDIPEVSLTEVSPPPback to top mRNA from alignment at H-elongata_contig53968:837..3617+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig53968.12760.1 ID=mRNA_H-elongata_contig53968.12760.1|Name=mRNA_H-elongata_contig53968.12760.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2781bp|location=Sequence derived from alignment at H-elongata_contig53968:837..3617+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig53968:837..3617+ >mRNA_H-elongata_contig53968.12760.1 ID=mRNA_H-elongata_contig53968.12760.1|Name=mRNA_H-elongata_contig53968.12760.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2088bp|location=Sequence derived from alignment at H-elongata_contig53968:837..3617+ (Himanthalia elongata Himel1 dioecious)back to top |