mRNA_H-elongata_contig53968.12760.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig53968.12760.1
Unique NamemRNA_H-elongata_contig53968.12760.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig53968.12760.1 vs. uniprot
Match: D7FS84_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FS84_ECTSI)

HSP 1 Score: 269 bits (687), Expect = 2.370e-80
Identity = 139/314 (44.27%), Postives = 190/314 (60.51%), Query Frame = 1
Query:  208 LNKAGGSTVKYMLSPWIEEHNISLGLYDSTQWSSGPEFAQQFLQDKYMITWGAYTDGLRPHGG---QNCKWFTIFRHPIERLVSAYFYCRKGAVDGVCGTHIV--NAQEVDLVTFARHWGNFGLRQFMYG-----DIPVSAVAYDSREKDSRYF-----PAWWKMKHYIE-----------GLAINSSAVAATAAASATENLMSIEYPALKTFLAPVLERLSTRYAAVGTIEDWPTTLRLFDAALNLPSFDWAKPFHRIGTKNSNNAFLGEAEDALRSARTNPDIYEFIRLDMLLYEHALEVHAKQVEDYGIGD 1071
            +NKAGGSTVKYML+PW +  N+++GLYDS QW  G +FAQ FL D+  + WGAYT+GLRP GG   + CKWFTIFRHPI RLVSAYFYC+K   DG+C T  +  NA + DL  FA HWG+FGLRQF        ++  + V YD+    + Y      P W+++K Y++               + S  AA+ AA+ +              L PV E L+  YAAVG +E W T+L LF+ AL +P FDW + F  IG KNS+  F  E  + L  + T+P +  ++ LD+LLY++A+ VH +QV+ YG+G+
Sbjct:    1 MNKAGGSTVKYMLAPWTKAQNVTVGLYDSPQWLEGKDFAQDFLGDENSLMWGAYTEGLRPFGGLGLRECKWFTIFRHPIPRLVSAYFYCKKKPQDGLCATVALDANADDTDLYAFAEHWGDFGLRQFALAFVLPEELLANKVKYDATGICTPYHGKRSCPGWYELKLYLQQQLDEQEQGEGSRGWDGSGAAASGAATISH------------LLQPVQELLTNEYAAVGVLEQWETSLLLFNEALGMPGFDWPETFGSIGKKNSDGTFHNEEAEMLLRSWTDPRLRRYLSLDLLLYDYAVSVHNQQVDKYGLGE 302          
BLAST of mRNA_H-elongata_contig53968.12760.1 vs. uniprot
Match: A0A6H5JY77_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JY77_9PHAE)

HSP 1 Score: 267 bits (682), Expect = 4.220e-79
Identity = 133/317 (41.96%), Postives = 190/317 (59.94%), Query Frame = 1
Query:  148 PEVSLTEVSPPPR-DCWIFNHLNKAGGSTVKYMLSPWIEEHNISLGLYDSTQWSSGPEFAQQFLQDKYMITWGAYTDGLRPHGGQNCKWFTIFRHPIERLVSAYFYCRKGAVDGVCGTHIVNAQEVDLVTFARHWGNFGLRQFMYGDIP---------VSAVAYDSREKDSRYFPAWWKMKHYIEGLAINSSAVAATAAASATENLMSIEYPALKTFLAPVLERLSTRYAAVGTIEDWPTTLRLFDAALNLPSFDWAKPFHRIGTKNSNNA-FLGEAEDALRSARTNPDIYEFIRLDMLLYEHALEVHAKQVEDYGI 1065
            P     E+ P  + DCW+F+H+NK+GG TV+ M+ P++ E  +S  L+D  +WSSG  +A+ F+++  + T+G YT+GLR +  ++CKWFT+FRHP+ R+VSAYFYC++   D +C   +++A +VDL+TFA HWGN+GLRQF    I          VS     +R       PAW++ KHY+  L         T   S            L  FL+   E LSTRYAAVG IE+W  ++ LF+  LNL  FDW K F + G KNS  + F   ++ AL++A  +P++ +FI LD+LLY+HAL VH  QV D GI
Sbjct:   37 PVQGAQELKPTSKCDCWVFSHMNKSGGMTVRKMIMPFLTEKGVSTALFDDIEWSSGRSYAETFVKENAVFTYGGYTEGLRMYDDRDCKWFTVFRHPVSRVVSAYFYCQRAHHDQLCAAVVLDASKVDLLTFAEHWGNYGLRQFALASIKAEDVFHNEVVSEFCQQARGHGDVCIPAWYRQKHYLH-LPHQDDFCGPTQPESG-----------LAQFLSSAQETLSTRYAAVGIIEEWDNSMELFNRVLNLRRFDWVKEFQKSGKKNSGGSQFETASKSALKAAWHSPELKKFIWLDILLYDHALSVHRSQVADLGI 341          
BLAST of mRNA_H-elongata_contig53968.12760.1 vs. uniprot
Match: A0A6H5JQY7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQY7_9PHAE)

HSP 1 Score: 211 bits (538), Expect = 1.240e-58
Identity = 122/327 (37.31%), Postives = 178/327 (54.43%), Query Frame = 1
Query:  103 GATMWGVEAEGGTDIPEVSLTEVSPPPRDCWIFNHLNKAGGSTVKYMLSPWIEEHNISLGLYDSTQWSSGPEFAQQFLQDKYMITWGAYTDGLRPHGGQ-NCKWFTIFRHPIERLVSAYFYCRKGAVDGVCGTHIVNAQEVDLVTFARHWGNFGLRQFMYG-----DIPVSAVAYDSREKDSRYFPAWWKMKHYIEGLAINSSAVAATAAASATENLMSIEYPALKTFLAPVLERLSTRYAAVGTIEDWPTTLRLFDAALNLPSFDWAKPFHRIGTKNSNNAFLGEAEDALRSARTNPDIYEFIRLDMLLYEHALEVHAKQVEDYGI 1065
            GA +    A  G+D PE+SL   SPP   CW++  +NKAGG++++ M+  +    N ++G +  TQ+++G    QQ L  +  + WGAYT+GLRP+     CKWFT+ RHPI RLVSA+ YC     D +C T I   ++ D+  FA HWGN G+ QF        DI V+ V            P W+K K Y EG    S   + +A  S  +   ++  P +   L PV E L ++YAAVG +E W T++ LFD AL LP F+W         +N +++      D L ++ T+P + + + LD+LLYEHA  VH  Q+  YG+
Sbjct:   13 GALLELAAANVGSDSPELSL---SPPA--CWVYTDMNKAGGTSIRRMIKDYAAATNTTVGEFTHTQYNAGDRGVQQILDRRPSLIWGAYTEGLRPYATVLGCKWFTMVRHPIARLVSAFNYCGIVPSDQLCATRIHKPEDGDIYDFAEHWGNHGVVQFALAFEDLNDILVTEVK----------SPPWYKAKLYFEGRLGPSGKTSTSANISTKDVCQNVWMPEI---LQPVEELLRSKYAAVGILEQWETSMMLFDHALQLPGFNWTSTSASSTPRNVHDSKA--KNDLLVASMTDPVLKQILWLDILLYEHACSVHKAQLSRYGL 319          
BLAST of mRNA_H-elongata_contig53968.12760.1 vs. uniprot
Match: D7G715_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G715_ECTSI)

HSP 1 Score: 211 bits (536), Expect = 2.050e-57
Identity = 120/332 (36.14%), Postives = 170/332 (51.20%), Query Frame = 1
Query:  142 DIPEVSLTEVSPPPRDCWIFNHLNKAGGSTVKYML-SPWIEEHNISLGLYDSTQWSSGPEFAQQFLQDK-----YMITWGAYTDGLR------PHGGQN-CKWFTIFRHPIERLVSAYFYCRKGAVDGVCGTHIVNAQEVDLVTFARHWGNFGLRQFMYGDI-----------PVSAVAYDSREKDSRYFPAWWKMKHYIEGLAINSSAVAATAAASATENLMSIEYPALKTFLAPVLERLSTRYAAVGTIEDWPTTLRLFDAALNLPSFDWAKPFHRIGTKNSNNAFLGEAEDALRSARTNPDIYEFIRLDMLLYEHALEVHAKQVEDYGI 1065
            D P +++ +       CWIFNHL KAGG+TVK +L   W  E       YDS QW  G  +A+           +    G Y + LR      P   +  C+WFT+FRHP+ RLVSAY+YCR+   D +C +  V+++ VDLVTFARHWGNF LRQF  G +           P    A     +     P W+ +K ++     + S VA   +   T     +EY        PV++ L   YA VG +EDW  TL LFD+AL++P   W + F R G  N +  F GE +D L+ A ++P+I + + LD+ LY  A+++  +Q   YGI
Sbjct:   72 DAPALNIEDSPRSENRCWIFNHLQKAGGTTVKRLLFDSWGSESTT----YDSYQWKKGQGYAESVAASLASPAGWSAAAGGYLEALRRTPAFQPDDERTPCRWFTVFRHPVSRLVSAYYYCREDPSDQLCASEFVSSRNVDLVTFARHWGNFALRQFALGFVSHDKVKDFLVSPNGGGAMGLTAEQVELMPGWYMLKLFLN----DRSGVADDTSPEGTR----LEY-----MFRPVVDLLRDNYAVVGILEDWNATLSLFDSALDMPGMTWREEFERSGKLNVDTRFKGEKQDVLQQALSDPEIVKHLSLDLRLYGQAVDIFNQQRHSYGI 386          
BLAST of mRNA_H-elongata_contig53968.12760.1 vs. uniprot
Match: A0A6H5JNJ0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNJ0_9PHAE)

HSP 1 Score: 208 bits (529), Expect = 2.480e-57
Identity = 112/310 (36.13%), Postives = 171/310 (55.16%), Query Frame = 1
Query:  136 GTDIPEVSLTEVSPPPRDCWIFNHLNKAGGSTVKYMLSPWIEEHNISLGLYDSTQWSSGPEFAQQFLQDKYMITWGAYTDGLRPHGGQNCKWFTIFRHPIERLVSAYFYCRKGAVDGVCGTHIVNAQEVDLVTFARHWGNFGLRQFMYGDIPVSAVAYDSREKDSRYFPAWWKMKHYIEGLAINSSAVAATAAASATENLMSIEYPALKTFLAPVLERLSTRYAAVGTIEDWPTTLRLFDAALNLPSFDWAKPFHRIGTKNSNNAFLGEAEDALRSARTNPDIYEFIRLDMLLYEHALEVHAKQVEDYGI 1065
            G  +PE+SL+  +     CW+F H NKAGG+TVK  L  + E  N ++ L  S  ++ G +  Q  L DK ++  G Y +GLR    Q CKWFT+ RHPI RL+SA++YC  G  D +C  +I   ++ D+  FA+HWGN+ L QF  G +    +   + E D+   PAW+K K Y EG       ++     +  +   S+  P +   L PV E L + YAAVG +E W  ++ LFD AL +P F+W      +  + S N  + E +  L +A T+P + +++ LD+LLYE+A  +H +Q+  Y +
Sbjct:   24 GHTLPELSLSTPT-----CWVFTHNNKAGGTTVKTHLRNYAESRNETVALCHSDWYARGDKGIQDLLNDKPVLIAGGYAEGLRTSAFQGCKWFTMMRHPIARLISAFYYCSGGNRDQLCAANIHKPEDGDIYDFAKHWGNYALLQFALGVVDQHEIF--AEEVDA---PAWFKAKLYFEGRLGYPGNMSTATNRTTHDEWQSVWIPDI---LQPVEELLRSNYAAVGILEHWQRSMMLFDHALEIPGFNWTVASASLSPRKSQNKIV-EKKAMLAAAMTDPVLRQYVWLDLLLYEYACSLHEEQLRRYDL 319          
BLAST of mRNA_H-elongata_contig53968.12760.1 vs. uniprot
Match: D7FWQ3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWQ3_ECTSI)

HSP 1 Score: 211 bits (536), Expect = 9.920e-57
Identity = 117/317 (36.91%), Postives = 170/317 (53.63%), Query Frame = 1
Query:  181 PRDCWIFNHLNKAGGSTVKYMLSPWIEEHNISLGLYDSTQWSSGPEFAQQF-----LQDKYMITWGAYTDGLRPHG--GQNCKWFTIFRHPIERLVSAYFYCRKGAVDGVCGTHIVNAQEVDLVTFARHWGNFGLRQFMYGDIPVSAV--------AYDSREKDSRYFPAWWKMKHYIE-------GLAINSSAVAATAAASATENLMSIEYPALKTFLAPVLERLSTRYAAVGTIEDWPTTLRLFDAALNLPSFDWAKPFHRIGTKNSNNAFLGEAEDALRSARTNPDIYEFIRLDMLLYEHALEVHAKQVEDYGI 1065
            P  CW+F HL K GGSTVKYML      +     +YDS QW  G + +  F       + + +  G YT+ LR        C++FT+FRHPI R+VSAYFYCR    D  C + +V+A++VDL+TFA+HWGNF +RQF  G +P   V        A    + D +    W+++K Y+E       G+   S A+     A+AT     +E P L   L P ++ + + Y AVG +E W TTL LFD AL +P   W   F   G +  +        + L+ A T+ ++ +++RLD+LLYEHA++V  +Q   YG+
Sbjct:  153 PDQCWVFMHLQKCGGSTVKYMLR---RSYGSRYSIYDSNQWKLGDDISANFGVKLARGETWNVMAGGYTEALRRSEPVDAGCRFFTLFRHPIARMVSAYFYCRSTLGDAACASEVVDAKDVDLLTFAKHWGNFAVRQFALGFVPSDGVQEYIRTPEAQALHDFDLKKIAGWYQLKMYLERPEKGDWGVPGQSEAMTVEHDAAAT-----LEAP-LYDLLQPAMDLIRSGYVAVGILEQWNTTLHLFDHALEIPGMYWGAQFAEGGKQRVDYKNKRLESETLKQAWTDSELKKYMRLDLLLYEHAVDVFHEQARGYGL 460          
BLAST of mRNA_H-elongata_contig53968.12760.1 vs. uniprot
Match: D7G716_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G716_ECTSI)

HSP 1 Score: 204 bits (518), Expect = 3.280e-54
Identity = 119/319 (37.30%), Postives = 176/319 (55.17%), Query Frame = 1
Query:  154 VSLTEVSPP-PRDCWIFNHLNKAGGSTVKYMLSPWIEEHNISLGLYDSTQWSSGPEFAQQF-----LQDKYMITWGAYTDGLRPHG--GQNCKWFTIFRHPIERLVSAYFYCRKGAVDGVCGTHIVNAQEVDLVTFARHWGNFGLRQFMYGDIPVSAVAYDSREKDSRYFPAWWKMKHYIE-------GLAINSSAVAATAAASATENLMSIEYPALKTFLAPVLERLSTRYAAVGTIEDWPTTLRLFDAALNLPSFDWAKPFHRIGTKNSNNAFLGEAEDALRSARTNPDIYEFIRLDMLLYEHALEVHAKQVEDYGI 1065
            V+ T  SP  P  CW+F HL K GGSTVK +L    +       +YDS +W  G EF+ +F     L DK+ +  G YT+ LR     G  C++FT+FRHPI R+VSAYFYCR  + D  C + ++ A++VDL+TFA+HWGNF LRQF  G +P      D +E         +++K Y+E       G+     A+ A   A+AT +    E       L P ++ +   Y AVG +E W TTLRLFD  L++P  +W + F   G  + +        + L+ A T+ ++ +++RLD+LLYEHA++V  +Q   +G+
Sbjct:  164 VAATVQSPASPGQCWVFMHLQKCGGSTVKDLLE---DRWGSRFFIYDSMRWKFGDEFSAKFGAKLALGDKWNVMTGGYTEALRLSEPVGAGCRFFTLFRHPIARMVSAYFYCRSVSGDVACASEVMQAKDVDLLTFAKHWGNFALRQFALGFVPSD----DVQE---------YQLKMYLERPQKEDGGVLGQREAMTAHQDAAATPDAPLYE------LLQPAMDLVRDGYVAVGILEQWNTTLRLFDHTLDMPVMNWEEQFAESGKHHVDIVNKQLEIETLQQAWTDSELKKYMRLDLLLYEHAVDVFHQQARSHGL 460          
BLAST of mRNA_H-elongata_contig53968.12760.1 vs. uniprot
Match: A0A6H5JQM0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQM0_9PHAE)

HSP 1 Score: 168 bits (426), Expect = 5.830e-41
Identity = 101/298 (33.89%), Postives = 149/298 (50.00%), Query Frame = 1
Query:  190 CWIFNHLNKAGGSTVKYMLSP-WIEEHNISLGLYDSTQWSSGPEFAQQFLQDKYMITWGAYTDGLRPHGGQNCKWFTIFRHPIERLVSAYFYCRKGAVDGVCGTHIVNAQEVDLVTFARHWGNFGLRQFMYGDIPVSAVAYDSREKDSRYFPA-WWKMKHYIEGLAINSSAVAATAAASATENLMSIEYPALKTFLAPVLERLSTRYAAVGTIEDWPTTLRLFDAALNLPSFDWAKPFHRIG----TKNSNNAFLGEAEDALRSARTNPDIYEFIRLDMLLYEHALEVHAKQVEDYGI 1065
            CWIF H++K+G S  + + +  W ++  +    +D+ QW  G  FA   +   + +  G   + LR H  ++CKW TIFRHPI RL+SAY +C +   D VC       +   LV FA  WGNF +RQF    +  SAV   + ++ +R   + W+ +K Y+    I    V                   L++ L PV   LST+YAAVG  ++  TT+ LF  AL++   DW+  +  +G     K  +   + E+E   R A  NP I   +RLDM LYEHA+ V   QV  +GI
Sbjct:  273 CWIFMHMDKSGASGARRVATERWRKDELV----FDTVQWRRGDGFAADVMASHWKLLHGGCVESLRNHKERSCKWLTIFRHPIARLLSAYHHCLEAPKDPVCPP----TESTGLVVFAELWGNFAMRQFALESVSPSAVKEWAAQRQARTGTSMWYLVKEYLARGGIAEDEV-------------------LESMLEPVKGLLSTQYAAVGIAQELETTMVLFSKALSMEGLDWSSSWATLGINEEVKQDSEYDIAESEP-FRQALENPRIVSALRLDMSLYEHAMHVFKDQVAQFGI 542          
BLAST of mRNA_H-elongata_contig53968.12760.1 vs. uniprot
Match: A0A6H5L061_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L061_9PHAE)

HSP 1 Score: 155 bits (392), Expect = 2.280e-39
Identity = 85/219 (38.81%), Postives = 124/219 (56.62%), Query Frame = 1
Query:  421 FRHPIERLVSAYFYCRKGAVDGVCGTHIVNAQEVDLVTFARHWGNFGLRQFMYGDIPVSAVAYDSREK--DSR--YFPAWWKMKHYIEGLAINSSAVAATAAASATENLMSIEYPALKTFLAPVLERLSTRYAAVGTIEDWPTTLRLFDAALNLPSFDWAKPFHRIGTKNSNNAFLGEAEDALRSARTNPDIYEFIRLDMLLYEHALEVHAKQVEDYGI 1065
            ++ PI RLVSAYFYC++   D +C + ++ A   DL TFA+HWGN+GLRQF    +    V    +E+  D R   FP W+++K Y E         A      A+ +L      A+   L PV + LS  Y+AVG +E W T++ LF+ AL +PSF+W      +G KN +     E   ALR+A  +P + + + LD+ LY+HA+ VH KQVE++GI
Sbjct:   18 YKCPIPRLVSAYFYCKQNGWDELCASMVLKAGNTDLHTFAKHWGNYGLRQFSLAFVGAEDVFAAEQERGIDGRPVMFPGWYRVKEYFENQFDVEQERALMQETGASNDL------AMSYLLQPVEDLLSRNYSAVGILEKWETSMTLFNKALKVPSFNWQTASRNLGRKNVDKRLHDEEAHALRAAWDDPVLAKTLWLDIFLYDHAVAVHNKQVEEHGI 230          
BLAST of mRNA_H-elongata_contig53968.12760.1 vs. uniprot
Match: D8LU75_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU75_ECTSI)

HSP 1 Score: 151 bits (382), Expect = 1.360e-37
Identity = 96/292 (32.88%), Postives = 143/292 (48.97%), Query Frame = 1
Query:  208 LNKAGGSTVKYMLSP-WIEEHNISLGLYDSTQWSSGPEFAQQFLQDKYMITWGAYTDGLRPHGGQNCKWFTIFRHPIERLVSAYFYCRKGAVDGVCGTHIVNAQEVDLVTFARHWGNFGLRQFMYGDIPVSAVAYDSREKDSRYFPA-WWKMKHYIEGLAINSSAVAATAAASATENLMSIEYPALKTFLAPVLERLSTRYAAVGTIEDWPTTLRLFDAALNLPSFDWAKPFHRIGT----KNSNNAFLGEAEDALRSARTNPDIYEFIRLDMLLYEHALEVHAKQVEDYGI 1065
            ++K+G S  + + +  W ++  +    +D+ QW  G  FA   +  ++ +  G   + LR H G++CKW TIFRHPI RL+SAY +C     D VC       +   L  FA  WGNF +RQF    +  SAV   + ++ +R   + W+ +K Y+    I    V                   L + L PV   LST+YAAVG  ++  TT+ LF  AL++   DW+  +  +G     K  +   + E+E   R A  NP I   +RLDM LYEHA+ V   QV  +GI
Sbjct:    1 MDKSGASGARRVATEQWRKDELV----FDTVQWRRGDGFAADVMASRWKLLHGGCVESLRNHKGRSCKWITIFRHPIARLLSAYDHCLGAPKDPVCPP----TESTGLAAFAELWGNFAMRQFALAAVSPSAVKEWAAQRQARTGTSMWYLVKEYLARGGIAEDEV-------------------LGSKLEPVKGLLSTQYAAVGIAQELKTTMVLFSKALSMEGLDWSSSWATLGINEEDKQDSEYDITESEP-FRQALENPRIVSALRLDMSLYEHAVHVFKDQVAQFGI 264          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig53968.12760.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 23
Match NameE-valueIdentityDescription
D7FS84_ECTSI2.370e-8044.27Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5JY77_9PHAE4.220e-7941.96Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JQY7_9PHAE1.240e-5837.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G715_ECTSI2.050e-5736.14Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JNJ0_9PHAE2.480e-5736.13Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FWQ3_ECTSI9.920e-5736.91Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G716_ECTSI3.280e-5437.30Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5JQM0_9PHAE5.830e-4133.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L061_9PHAE2.280e-3938.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LU75_ECTSI1.360e-3732.88Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig53968contigH-elongata_contig53968:837..3617 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score213.8
Seed ortholog evalue1.3e-52
Seed eggNOG ortholog2880.D7FWQ3
EggNOG free text desc.Sulfotransferase family
EggNOG OGs2CYGC@1,2S47N@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal peptide
Exons2
Model size2331
Cds size1044
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig53968.12760.1prot_H-elongata_contig53968.12760.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig53968 870..2363 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930878.8861985-UTR-H-elongata_contig53968:836..8691622930878.8861985-UTR-H-elongata_contig53968:836..869Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig53968 837..869 +
1691679608.657635-UTR-H-elongata_contig53968:836..8691691679608.657635-UTR-H-elongata_contig53968:836..869Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig53968 837..869 +
1622930878.9443095-UTR-H-elongata_contig53968:2363..36171622930878.9443095-UTR-H-elongata_contig53968:2363..3617Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig53968 2364..3617 +
1691679608.6930823-UTR-H-elongata_contig53968:2363..36171691679608.6930823-UTR-H-elongata_contig53968:2363..3617Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig53968 2364..3617 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930878.906011-CDS-H-elongata_contig53968:869..12641622930878.906011-CDS-H-elongata_contig53968:869..1264Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53968 870..1264 +
1691679608.670034-CDS-H-elongata_contig53968:869..12641691679608.670034-CDS-H-elongata_contig53968:869..1264Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53968 870..1264 +
1622930878.923374-CDS-H-elongata_contig53968:1714..23631622930878.923374-CDS-H-elongata_contig53968:1714..2363Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53968 1715..2363 +
1691679608.6800153-CDS-H-elongata_contig53968:1714..23631691679608.6800153-CDS-H-elongata_contig53968:1714..2363Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53968 1715..2363 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig53968.12760.1

>prot_H-elongata_contig53968.12760.1 ID=prot_H-elongata_contig53968.12760.1|Name=mRNA_H-elongata_contig53968.12760.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=348bp
MGWWPRRLRTGFVMVLLIICKNKGATMWGVEAEGGTDIPEVSLTEVSPPP
RDCWIFNHLNKAGGSTVKYMLSPWIEEHNISLGLYDSTQWSSGPEFAQQF
LQDKYMITWGAYTDGLRPHGGQNCKWFTIFRHPIERLVSAYFYCRKGAVD
GVCGTHIVNAQEVDLVTFARHWGNFGLRQFMYGDIPVSAVAYDSREKDSR
YFPAWWKMKHYIEGLAINSSAVAATAAASATENLMSIEYPALKTFLAPVL
ERLSTRYAAVGTIEDWPTTLRLFDAALNLPSFDWAKPFHRIGTKNSNNAF
LGEAEDALRSARTNPDIYEFIRLDMLLYEHALEVHAKQVEDYGIGDE*
back to top

mRNA from alignment at H-elongata_contig53968:837..3617+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig53968.12760.1 ID=mRNA_H-elongata_contig53968.12760.1|Name=mRNA_H-elongata_contig53968.12760.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2781bp|location=Sequence derived from alignment at H-elongata_contig53968:837..3617+ (Himanthalia elongata Himel1 dioecious)
GTTCAAAAAGAGCCTGCTTTTTCATCGTTAAAAATGGGGTGGTGGCCGAG GCGCCTTCGGACGGGGTTCGTGATGGTACTACTAATCATCTGCAAGAACA AAGGAGCGACTATGTGGGGTGTAGAAGCGGAGGGGGGCACGGACATCCCC GAAGTTTCGTTGACAGAGGTGTCACCGCCGCCCCGGGACTGTTGGATATT CAACCATTTGAATAAGGCGGGCGGCTCGACGGTGAAGTACATGTTGTCCC CGTGGATCGAGGAGCACAACATCAGTTTGGGACTGTATGATTCCACCCAA TGGAGTTCCGGACCGGAATTCGCGCAGCAGTTTCTCCAGGATAAGTACAT GATCACATGGGGGGCGTACACGGATGGACTTCGGCCACATGGAGGTCAAA ACTGCAAATGGTTCACGATTTTTCGACAGTGAGTGCATATTTTTACTCTT CTTGCAGCATATTTAGCTTCAAAAATCATCTAACTTGCTCGTGTACAGGG TTTCCGTTTTGTTTTTCCCTTCGACCCATTGTCGTGGCACACCATTCGCA TTTGCATTCGCAGCTTCCCTGTTGAGTTTTTCACAATTTCGATTGTAAGC CCCCCTCCCATGTTTTCCCCAACCGCCTCCGTGTCTGATTAAGTTATTCT CCAGGTTCAAGTAAGGCTACGTAGTACTGTTGAGTTTTTTGTCGTCTGCG CACGACACGCATGTCAGTCTTCGTGACGTCTTCCGGCGATGACAATCCAT CAGCTCTGTATAGGCAAGGACAGTTGTTTGTTTCAAAATGAGCTTTCTCC GGCATAACTCTTACCATAGTTTTGTTTCTGATTTTGCCCTTTTTTTTGCT GTTAACGTCGTTCTGGTGGAACTTTCAGCCCAATCGAACGCCTTGTTAGC GCATACTTCTACTGCAGGAAGGGCGCGGTGGACGGGGTGTGTGGGACCCA TATTGTGAATGCGCAGGAGGTAGACCTAGTTACGTTCGCCAGGCACTGGG GAAACTTTGGCTTGCGGCAGTTCATGTACGGGGATATTCCAGTGTCGGCC GTGGCCTACGACTCGCGGGAAAAAGATAGCAGGTACTTCCCAGCTTGGTG GAAAATGAAGCACTACATTGAAGGCCTGGCGATCAACAGCTCCGCGGTCG CCGCTACCGCAGCCGCGAGTGCCACAGAAAACCTTATGTCGATAGAATAC CCGGCCCTAAAAACGTTCCTCGCGCCGGTATTAGAGCGACTCAGCACTCG ATACGCCGCCGTCGGTACAATTGAGGATTGGCCGACCACGCTTCGCCTTT TCGACGCCGCGCTAAATCTGCCGAGCTTTGATTGGGCGAAGCCTTTTCAC CGTATAGGCACGAAGAACTCCAACAACGCGTTCCTTGGGGAGGCGGAGGA TGCACTGCGATCCGCGAGGACCAATCCGGACATTTATGAGTTCATCCGGC TTGATATGTTGTTGTACGAGCACGCGCTTGAAGTCCATGCCAAGCAAGTC GAGGACTACGGCATTGGTGACGAATAAAGTGACTATCGGCGAGCAACTCC CGCGAGTGTGAGGGAATTGGCGATTGGGGGACTGATGGTGATGGCACTAT CCATGTTACATACTAAGCAGAATAAAGGTTATCGACGGGGAGGTAATATG TCGTTGGTACCTTTTATCCGTTCGCGATCGTCGTGTAGCTATCGATCAAC GACATCGTTTTTTTGTACATTTACAGTATCATATAGGGGGTCGTTCGATG TTAATATAATAGCGCCACGACATGCTCCGTTAGGACTGTCCATGTAACGC TACGATCGCAGCCTTAGTTAGGACTGTCCATGTGACGTTTGCACTATTTA TGTTTGGCCAGGTAAGAGGCACCAGCGTATTAGGCTACCGACTACCGATC AGTCGTACACCCGCATCAAATTTGATCGGGGGTTTGGAAGATGTATGCTT ATTTTCCTCCTTTTCTGGTTCATTGTTTTTTCTAAGAGCTTAGATATTCG TTGCTTTAATTTTGTCTTTTCCTCCCAGTTCCTCTTTCCAGCATACCTTA AAATTGATTAATAATCGCAAACGCGAATACTAGTGGATATGTTTCGAGCC CAATCGTTTAATGTGTAGAACCCACGCAGCCTACAATCGTGGTTTCAGTA TTGGTCCTTATTTCAGCAGTCAGTTCACGGAACAAATCAATGTCATGGAT GCAACTTATTACGCATCTATTTGCTGGTTGTGTGTATTATGTGTTTGCGT TCAGCGCGATCTAGAGCACGTATTGCGTATTTATAGTCTCCCGGGGCAAT TCGATGGCAAACGTGTGGCCCAGCATTTGTGGTTGTAAAATAGTAGTATA GTTGTCCCACCGAAATCCCTGTTTTGAGGCATGATTTCCTTTGGGAGCGT GGGGTGGGGGGATAGGTCGGCGTATATTGGAACTTCACTAATCTATAGAT AAAATTTGCTTGCTTCCTACCCGACTTGGGTCAGATTTGAGGGAGACGGC CGCGATATATTTGCGTCATGATGGCGCTAATCGGGTTGTATCACCCCAGA ATGTCAAATTTGCCGTTGTATGCGGAGTGATACGCGCGAATGAAGGATAC AGTTTTGCGAAAAAGCCTTCTTAAGAGAAGAGTATTTCTTTCGGAGGTGA AGAAAAGAATGCGTGGATGTTCGGAGGGTTGGAATGAGTTGAAGGGTTTT AAAAATAAAAATAATGTGTACAGTAATATTGCATCACTACTCTATTCCAG ATTCAAAGAAGAGATTCGCTTATCCAACATA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig53968:837..3617+

>mRNA_H-elongata_contig53968.12760.1 ID=mRNA_H-elongata_contig53968.12760.1|Name=mRNA_H-elongata_contig53968.12760.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2088bp|location=Sequence derived from alignment at H-elongata_contig53968:837..3617+ (Himanthalia elongata Himel1 dioecious)
ATGGGGTGGTGGCCGAGGCGCCTTCGGACGGGGTTCGTGATGGTACTACT
AATCATCTGCAAGAACAAAGGAGCGACTATGTGGGGTGTAGAAGCGGAGG
GGGGCACGGACATCCCCGAAGTTTCGTTGACAGAGGTGTCACCGCCGCCC
CGGGACTGTTGGATATTCAACCATTTGAATAAGGCGGGCGGCTCGACGGT
GAAGTACATGTTGTCCCCGTGGATCGAGGAGCACAACATCAGTTTGGGAC
TGTATGATTCCACCCAATGGAGTTCCGGACCGGAATTCGCGCAGCAGTTT
CTCCAGGATAAGTACATGATCACATGGGGGGCGTACACGGATGGACTTCG
GCCACATGGAGGTCAAAACTGCAAATGGTTCACGATTTTTCGACAATGGG
GTGGTGGCCGAGGCGCCTTCGGACGGGGTTCGTGATGGTACTACTAATCA
TCTGCAAGAACAAAGGAGCGACTATGTGGGGTGTAGAAGCGGAGGGGGGC
ACGGACATCCCCGAAGTTTCGTTGACAGAGGTGTCACCGCCGCCCCGGGA
CTGTTGGATATTCAACCATTTGAATAAGGCGGGCGGCTCGACGGTGAAGT
ACATGTTGTCCCCGTGGATCGAGGAGCACAACATCAGTTTGGGACTGTAT
GATTCCACCCAATGGAGTTCCGGACCGGAATTCGCGCAGCAGTTTCTCCA
GGATAAGTACATGATCACATGGGGGGCGTACACGGATGGACTTCGGCCAC
ATGGAGGTCAAAACTGCAAATGGTTCACGATTTTTCGACACCCAATCGAA
CGCCTTGTTAGCGCATACTTCTACTGCAGGAAGGGCGCGGTGGACGGGGT
GTGTGGGACCCATATTGTGAATGCGCAGGAGGTAGACCTAGTTACGTTCG
CCAGGCACTGGGGAAACTTTGGCTTGCGGCAGTTCATGTACGGGGATATT
CCAGTGTCGGCCGTGGCCTACGACTCGCGGGAAAAAGATAGCAGGTACTT
CCCAGCTTGGTGGAAAATGAAGCACTACATTGAAGGCCTGGCGATCAACA
GCTCCGCGGTCGCCGCTACCGCAGCCGCGAGTGCCACAGAAAACCTTATG
TCGATAGAATACCCGGCCCTAAAAACGTTCCTCGCGCCGGTATTAGAGCG
ACTCAGCACTCGATACGCCGCCGTCGGTACAATTGAGGATTGGCCGACCA
CGCTTCGCCTTTTCGACGCCGCGCTAAATCTGCCGAGCTTTGATTGGGCG
AAGCCTTTTCACCGTATAGGCACGAAGAACTCCAACAACGCGTTCCTTGG
GGAGGCGGAGGATGCACTGCGATCCGCGAGGACCAATCCGGACATTTATG
AGTTCATCCGGCTTGATATGTTGTTGTACGAGCACGCGCTTGAAGTCCAT
GCCAAGCAAGTCGAGGACTACGGCATTGGTGACGAATAACCCAATCGAAC
GCCTTGTTAGCGCATACTTCTACTGCAGGAAGGGCGCGGTGGACGGGGTG
TGTGGGACCCATATTGTGAATGCGCAGGAGGTAGACCTAGTTACGTTCGC
CAGGCACTGGGGAAACTTTGGCTTGCGGCAGTTCATGTACGGGGATATTC
CAGTGTCGGCCGTGGCCTACGACTCGCGGGAAAAAGATAGCAGGTACTTC
CCAGCTTGGTGGAAAATGAAGCACTACATTGAAGGCCTGGCGATCAACAG
CTCCGCGGTCGCCGCTACCGCAGCCGCGAGTGCCACAGAAAACCTTATGT
CGATAGAATACCCGGCCCTAAAAACGTTCCTCGCGCCGGTATTAGAGCGA
CTCAGCACTCGATACGCCGCCGTCGGTACAATTGAGGATTGGCCGACCAC
GCTTCGCCTTTTCGACGCCGCGCTAAATCTGCCGAGCTTTGATTGGGCGA
AGCCTTTTCACCGTATAGGCACGAAGAACTCCAACAACGCGTTCCTTGGG
GAGGCGGAGGATGCACTGCGATCCGCGAGGACCAATCCGGACATTTATGA
GTTCATCCGGCTTGATATGTTGTTGTACGAGCACGCGCTTGAAGTCCATG
CCAAGCAAGTCGAGGACTACGGCATTGGTGACGAATAA
back to top