mRNA_H-elongata_contig53767.12736.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig53767.12736.1
Unique NamemRNA_H-elongata_contig53767.12736.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig53767.12736.1 vs. uniprot
Match: E1Z887_CHLVA (Uncharacterized protein n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1Z887_CHLVA)

HSP 1 Score: 141 bits (355), Expect = 7.300e-37
Identity = 63/102 (61.76%), Postives = 85/102 (83.33%), Query Frame = 1
Query:    1 FGAVPVSPRNMYRLLRRGDNVLLFPGGVKEAYHKKGEAYKVIWPEKAEFVRLAAEFGATIVPFSAIGIADSLEMVLDGDELLRLPIVGDSLRRQSEGLPTAR 306
            FGAVPVS  NM+RLL+ G++VLLFPGGV+EAY ++GE Y++ WPEK+EF+R+AA FGATIVPF+A+G+ DSL ++ D  +L  +P+VGD LRR++ GLP AR
Sbjct:  620 FGAVPVSAFNMHRLLQAGESVLLFPGGVREAYKRRGEEYRLFWPEKSEFIRMAARFGATIVPFAAVGVDDSLNILADSQQLEAMPVVGDMLRRRAGGLPQAR 721          
BLAST of mRNA_H-elongata_contig53767.12736.1 vs. uniprot
Match: A0A7S1HX58_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1HX58_9EUGL)

HSP 1 Score: 136 bits (343), Expect = 4.720e-36
Identity = 64/102 (62.75%), Postives = 81/102 (79.41%), Query Frame = 1
Query:    1 FGAVPVSPRNMYRLLRRGDNVLLFPGGVKEAYHKKGEAYKVIWPEKAEFVRLAAEFGATIVPFSAIGIADSLEMVLDGDELLRLPIVGDSLRRQSEGLPTAR 306
            FGAV VS RN+Y LL   +  LLFPGGV+EAY  KGE Y++IWP K EFVRLA+ FGATI+P SAIG  D LEM+LD ++LL LP++G+ +RR++EG+PTAR
Sbjct:  216 FGAVGVSGRNLYDLLNGDEVALLFPGGVREAYKGKGEEYQLIWPTKPEFVRLASRFGATIIPLSAIGADDGLEMLLDSNDLLNLPVIGEQVRRRAEGIPTAR 317          
BLAST of mRNA_H-elongata_contig53767.12736.1 vs. uniprot
Match: A0A7S0RX44_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Chlamydomonas leiostraca TaxID=1034604 RepID=A0A7S0RX44_9CHLO)

HSP 1 Score: 129 bits (324), Expect = 1.120e-35
Identity = 57/102 (55.88%), Postives = 80/102 (78.43%), Query Frame = 1
Query:    1 FGAVPVSPRNMYRLLRRGDNVLLFPGGVKEAYHKKGEAYKVIWPEKAEFVRLAAEFGATIVPFSAIGIADSLEMVLDGDELLRLPIVGDSLRRQSEGLPTAR 306
            FGAVPV   NM++LL  G+ VLL+PGG +EA+ +K E YK++WPE+AEFVR+AA FGATI+PF+A+G  D +  VLDG +L  LPI+G+S+R+++  +P AR
Sbjct:   15 FGAVPVGGFNMHKLLAGGEVVLLYPGGAREAFKRKDEKYKLLWPERAEFVRMAARFGATIIPFAAVGAEDGVNQVLDGRDLAALPIIGESIRKRASAVPQAR 116          
BLAST of mRNA_H-elongata_contig53767.12736.1 vs. uniprot
Match: A0A2P6V1X8_9CHLO (Acyltransferase chloroplastic n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6V1X8_9CHLO)

HSP 1 Score: 137 bits (344), Expect = 2.250e-35
Identity = 62/102 (60.78%), Postives = 83/102 (81.37%), Query Frame = 1
Query:    1 FGAVPVSPRNMYRLLRRGDNVLLFPGGVKEAYHKKGEAYKVIWPEKAEFVRLAAEFGATIVPFSAIGIADSLEMVLDGDELLRLPIVGDSLRRQSEGLPTAR 306
            FGAVPVS  NM+RLL  G+ VLLFPGGV+EAY ++GE Y++ WPEK+EF+R+AA FGATIVPF+A+G+ DSL ++ D  +L  LP+VGD+LRR++  +P AR
Sbjct:  609 FGAVPVSGFNMHRLLASGEAVLLFPGGVREAYKRRGEDYQLFWPEKSEFIRMAARFGATIVPFAAVGVDDSLNIIADSTQLEALPVVGDALRRRAGSMPQAR 710          
BLAST of mRNA_H-elongata_contig53767.12736.1 vs. uniprot
Match: A0A7S1HX56_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1HX56_9EUGL)

HSP 1 Score: 136 bits (343), Expect = 3.190e-35
Identity = 64/102 (62.75%), Postives = 81/102 (79.41%), Query Frame = 1
Query:    1 FGAVPVSPRNMYRLLRRGDNVLLFPGGVKEAYHKKGEAYKVIWPEKAEFVRLAAEFGATIVPFSAIGIADSLEMVLDGDELLRLPIVGDSLRRQSEGLPTAR 306
            FGAV VS RN+Y LL   +  LLFPGGV+EAY  KGE Y++IWP K EFVRLA+ FGATI+P SAIG  D LEM+LD ++LL LP++G+ +RR++EG+PTAR
Sbjct:  629 FGAVGVSGRNLYDLLNGDEVALLFPGGVREAYKGKGEEYQLIWPTKPEFVRLASRFGATIIPLSAIGADDGLEMLLDSNDLLNLPVIGEQVRRRAEGIPTAR 730          
BLAST of mRNA_H-elongata_contig53767.12736.1 vs. uniprot
Match: A0A2P6TRL1_CHLSO (Acyltransferase chloroplastic n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TRL1_CHLSO)

HSP 1 Score: 136 bits (342), Expect = 3.660e-35
Identity = 59/102 (57.84%), Postives = 84/102 (82.35%), Query Frame = 1
Query:    1 FGAVPVSPRNMYRLLRRGDNVLLFPGGVKEAYHKKGEAYKVIWPEKAEFVRLAAEFGATIVPFSAIGIADSLEMVLDGDELLRLPIVGDSLRRQSEGLPTAR 306
            FGAVPVS +NM+RLL+  + VLLFPGGV+EAY ++GE Y++ WPEK+EF+R+AA FGATIVPF+A+G+ DSL ++ D  +L  +P++GD ++R++ GLP AR
Sbjct:  519 FGAVPVSAKNMHRLLQNKEAVLLFPGGVREAYKRRGEEYQLFWPEKSEFIRMAARFGATIVPFAAVGVDDSLNIIADSQQLEAMPVLGDMVKRRAGGLPQAR 620          
BLAST of mRNA_H-elongata_contig53767.12736.1 vs. uniprot
Match: A0A3M7KUL9_AUXPR (Hydrolase_4 domain-containing protein n=4 Tax=Auxenochlorella protothecoides TaxID=3075 RepID=A0A3M7KUL9_AUXPR)

HSP 1 Score: 135 bits (339), Expect = 6.820e-35
Identity = 62/102 (60.78%), Postives = 82/102 (80.39%), Query Frame = 1
Query:    1 FGAVPVSPRNMYRLLRRGDNVLLFPGGVKEAYHKKGEAYKVIWPEKAEFVRLAAEFGATIVPFSAIGIADSLEMVLDGDELLRLPIVGDSLRRQSEGLPTAR 306
            FGAV VSPRNM+RLL  G+ +LLFPGG++EAY  +GE Y++ WP+++EFVR+AA FGATIVPF+A+GI DSL ++LD  ++  LP VGD+LRR+   LP AR
Sbjct:  432 FGAVRVSPRNMFRLLSNGEAILLFPGGMREAYKGRGEEYRLFWPDRSEFVRMAARFGATIVPFAAVGIDDSLNILLDPSQVQALPFVGDALRRRQALLPQAR 533          
BLAST of mRNA_H-elongata_contig53767.12736.1 vs. uniprot
Match: A0A0K6S9U4_9ALVE (AB hydrolase-1 domain-containing protein n=2 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0K6S9U4_9ALVE)

HSP 1 Score: 134 bits (337), Expect = 2.090e-34
Identity = 61/102 (59.80%), Postives = 79/102 (77.45%), Query Frame = 1
Query:    1 FGAVPVSPRNMYRLLRRGDNVLLFPGGVKEAYHKKGEAYKVIWPEKAEFVRLAAEFGATIVPFSAIGIADSLEMVLDGDELLRLPIVGDSLRRQSEGLPTAR 306
            FGAVPV+PRN  RL++RGD  +LFPGGV+E YH+KGE   V+WP+  EFVRLAA + ATI+PFSAIG +DS  ++LD +ELL++PI+GD LR  +  LP  R
Sbjct:  778 FGAVPVTPRNFVRLMQRGDWAMLFPGGVREVYHRKGEKDAVVWPQSPEFVRLAARYNATIIPFSAIGSSDSFSLLLDTEELLKVPILGDRLRENAMKLPKVR 879          
BLAST of mRNA_H-elongata_contig53767.12736.1 vs. uniprot
Match: A0A7S2QSI7_9EUKA (Hypothetical protein n=1 Tax=Norrisiella sphaerica TaxID=552664 RepID=A0A7S2QSI7_9EUKA)

HSP 1 Score: 129 bits (324), Expect = 1.170e-32
Identity = 57/102 (55.88%), Postives = 80/102 (78.43%), Query Frame = 1
Query:    1 FGAVPVSPRNMYRLLRRGDNVLLFPGGVKEAYHKKGEAYKVIWPEKAEFVRLAAEFGATIVPFSAIGIADSLEMVLDGDELLRLPIVGDSLRRQSEGLPTAR 306
            FGAVPVS RN+  L+R     LLFPGGV+E YH+KGE YKV WP++ EF+R AA+  AT+VPFSAIG+ADS++MV D  ++L+ P++GD+++++ + LP AR
Sbjct:  670 FGAVPVSGRNLDALMRERMPALLFPGGVREVYHRKGEDYKVFWPQRGEFIRAAAKHNATVVPFSAIGVADSVQMVADAQDILKTPVLGDNVKQRMQYLPRAR 771          
BLAST of mRNA_H-elongata_contig53767.12736.1 vs. uniprot
Match: A0A1Y1HUH4_KLENI (Esterase/lipase/thioesterase family protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HUH4_KLENI)

HSP 1 Score: 127 bits (320), Expect = 3.670e-32
Identity = 55/102 (53.92%), Postives = 80/102 (78.43%), Query Frame = 1
Query:    1 FGAVPVSPRNMYRLLRRGDNVLLFPGGVKEAYHKKGEAYKVIWPEKAEFVRLAAEFGATIVPFSAIGIADSLEMVLDGDELLRLPIVGDSLRRQSEGLPTAR 306
            FGAV  +  N+Y+LL+  D  LL+PGGV+EAYH K EAY++ WP++ EFVR+A +FGATIVP + +G ADS++++L  DE+L+LPI+GD +R+Q+E +P  R
Sbjct:  517 FGAVNATGPNLYKLLQNRDAALLYPGGVREAYHGKNEAYQLFWPDQPEFVRMAIKFGATIVPIAGVGSADSIDLLLGPDEILKLPIIGDRVRKQAESIPNVR 618          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig53767.12736.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
E1Z887_CHLVA7.300e-3761.76Uncharacterized protein n=1 Tax=Chlorella variabil... [more]
A0A7S1HX58_9EUGL4.720e-3662.75Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]
A0A7S0RX44_9CHLO1.120e-3555.88Hypothetical protein (Fragment) n=1 Tax=Chlamydomo... [more]
A0A2P6V1X8_9CHLO2.250e-3560.78Acyltransferase chloroplastic n=1 Tax=Micractinium... [more]
A0A7S1HX56_9EUGL3.190e-3562.75Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]
A0A2P6TRL1_CHLSO3.660e-3557.84Acyltransferase chloroplastic n=1 Tax=Chlorella so... [more]
A0A3M7KUL9_AUXPR6.820e-3560.78Hydrolase_4 domain-containing protein n=4 Tax=Auxe... [more]
A0A0K6S9U4_9ALVE2.090e-3459.80AB hydrolase-1 domain-containing protein n=2 Tax=C... [more]
A0A7S2QSI7_9EUKA1.170e-3255.88Hypothetical protein n=1 Tax=Norrisiella sphaerica... [more]
A0A1Y1HUH4_KLENI3.670e-3253.92Esterase/lipase/thioesterase family protein n=1 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig53767contigH-elongata_contig53767:565..2383 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score125.6
Seed ortholog evalue1.2e-26
Seed eggNOG ortholog554065.XP_005850404.1
EggNOG free text desc.Diacylglycerol acyltransferase
EggNOG OGs2QQUD@2759,34H3H@3041,37RY3@33090,COG0204@1
COG Functional cat.I
Best tax levelChlorophyta
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons3
Model size306
Cds size276
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig53767.12736.1prot_H-elongata_contig53767.12736.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig53767 565..2353 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930876.6125624-CDS-H-elongata_contig53767:564..6581622930876.6125624-CDS-H-elongata_contig53767:564..658Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53767 565..658 -
1691679607.736654-CDS-H-elongata_contig53767:564..6581691679607.736654-CDS-H-elongata_contig53767:564..658Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53767 565..658 -
1622930876.6274436-CDS-H-elongata_contig53767:1323..14311622930876.6274436-CDS-H-elongata_contig53767:1323..1431Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53767 1324..1431 -
1691679607.7499979-CDS-H-elongata_contig53767:1323..14311691679607.7499979-CDS-H-elongata_contig53767:1323..1431Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53767 1324..1431 -
1622930876.6428404-CDS-H-elongata_contig53767:2279..23531622930876.6428404-CDS-H-elongata_contig53767:2279..2353Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53767 2280..2353 -
1691679607.7593954-CDS-H-elongata_contig53767:2279..23531691679607.7593954-CDS-H-elongata_contig53767:2279..2353Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53767 2280..2353 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930876.6584077-UTR-H-elongata_contig53767:2353..23831622930876.6584077-UTR-H-elongata_contig53767:2353..2383Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig53767 2354..2383 -
1691679607.7679274-UTR-H-elongata_contig53767:2353..23831691679607.7679274-UTR-H-elongata_contig53767:2353..2383Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig53767 2354..2383 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig53767.12736.1

>prot_H-elongata_contig53767.12736.1 ID=prot_H-elongata_contig53767.12736.1|Name=mRNA_H-elongata_contig53767.12736.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=92bp
MYRLLRRGDNVLLFPGGVKEAYHKKGEAYKVIWPEKAEFVRLAAEFGATI
VPFSAIGIADSLEMVLDGDELLRLPIVGDSLRRQSEGLPTAR
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mRNA from alignment at H-elongata_contig53767:565..2383-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig53767.12736.1 ID=mRNA_H-elongata_contig53767.12736.1|Name=mRNA_H-elongata_contig53767.12736.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1819bp|location=Sequence derived from alignment at H-elongata_contig53767:565..2383- (Himanthalia elongata Himel1 dioecious)
TTCGGAGCCGTTCCGGTATCCCCTCGCAACATGTACCGCCTGCTCAGGCG CGGGGACAACGTGCTCCTTTTCCCTGGAGGCGTTAAAGAGGCGTACCATA AAAAGTGAGCTTTGGATATAGAAACCGTTTAGTAATCGAAGCCTCTCCAC CCTCGGAGGGAAATATTTTTATATATATATATATATATATATATATATTA AAAATGCCGCATACATTGCTACACATTTTCCTCTGGCTCGGTAATTATGT ATGTCGACGCCACACGCCACATGTCATTAATAGCTATGGCAGGTTTCATT TTGTGGAGAAAGGTGTAGTCTAAGGTCAGAACGGGGTGGAAGTTACGGCA GGGATACTGTACTGTACTATACTGTACTGTAGTAGTTTAGTGATTTTGTA CTATACTGTATACTGTACCTGAAGGGCAAAGGAGGGGCGTTCTCGGAGAA CTTTACGGTCGTGTACGTGGGCACTGGATGGCCTTGATGGTCTAGATGGT CGAAATGGCATGTAATGGTGGTGGCGGTAAATGTATTGTGTTTCACTCCC GAGGTAATATTATTATCTTTTCTCTATTCAAAGTACTAATATTATCTTTC TCTGTTCCAAGTTATATTTCCTCTGTTCAAGGTAATATCTCCTCCTGAAC CAACATGCTAAAGAGGGCTATTGTGAAACATGCTAAAGAGGGCTAGCGGC ATGCGGTTGGGTTAGGGTTAGGATTGGGACGTTGGTTAAGGTATTGCTCA GCCGCCTATGCAGCGGGTCGGGTTATGGCGGCATCGTACGGTATGTCTTA CGGGTACAAGGTCATGATGTGGTGTCAAGGTCATAATGTGGTGTCAAGGT CATAATGTGGTGTCAAGGTCATGATGTGGTGTCAAGGTCATGATGTGGTG TCAAGGTCATGTTGTGGTGTCAAGGTCATGATGTTGTGTCATCTTGCTTC AGGGGTGAGGCGTACAAGGTCATCTGGCCAGAAAAGGCGGAGTTCGTCCG CCTCGCTGCCGAATTTGGCGCCACCATCGTCCCTTTCTCCGCCATCGGCA TCGCAGACAGGTAAGCCACAATACGGCAATCGGACCTCGAGCTGCACAAC AGCCATCGCCGCTAACCCTTGCACGATTGGAGGAAACTACACAACATTAT CTAGTATATTATACTATACATTATACTATACATTATATTACATCATTTAT TATAGTGCCTACTGGCTATTAATAGTTTATATTGTATTTTGTCTAGTGTA TAGTTTATAGTATCCAGTGTCTGGTGTATATTTTATAGTGTCTAGTGTAT ATTTTTTTGTGTAAAGTGTATATTTTTTGTGTCCAGTGTATATTGTCTAG TTTATATCGTCCAATGTATGTATATTGTCCAGTGTATATTCTCTAGTATC TAGTGTACTTTGTCTAGTTTATATTGTAAAGTGTCTAGTGGCTAATTCTG AAAACGCCATAACCATGAAAACGCCCTAACCCATTTATCCCTATGCCCGA AAAAAAAAACTAACCCCAAATTTTCGTATTAATTATTAATAGAACTGGGT GATAATTTTTACAATACTTCTACGGCATTCCCTCCCCTTCCCTTCCCTAA CCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTTCCC TTCTCTTCCCTAACCCTAACCCTAACCCTAACCCTAACCATTCCCTTCCC TTCTCTTCCCTAATCCTAACCCCAGCTTGGAGATGGTTCTCGATGGTGAT GAGCTGCTTCGTCTCCCTATTGTGGGCGACTCTCTGAGGAGGCAAAGCGA GGGGCTGCCGACCGCTAGA
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Coding sequence (CDS) from alignment at H-elongata_contig53767:565..2383-

>mRNA_H-elongata_contig53767.12736.1 ID=mRNA_H-elongata_contig53767.12736.1|Name=mRNA_H-elongata_contig53767.12736.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=552bp|location=Sequence derived from alignment at H-elongata_contig53767:565..2383- (Himanthalia elongata Himel1 dioecious)
ATGTACCGCCTGCTCAGGCGCGGGGACAACGTGCTCCTTTTCCCTGGAGG
CGTTAAAGAGGCGTACCATAAAAAATGTACCGCCTGCTCAGGCGCGGGGA
CAACGTGCTCCTTTTCCCTGGAGGCGTTAAAGAGGCGTACCATAAAAAGG
GTGAGGCGTACAAGGTCATCTGGCCAGAAAAGGCGGAGTTCGTCCGCCTC
GCTGCCGAATTTGGCGCCACCATCGTCCCTTTCTCCGCCATCGGCATCGC
AGACAGGGGTGAGGCGTACAAGGTCATCTGGCCAGAAAAGGCGGAGTTCG
TCCGCCTCGCTGCCGAATTTGGCGCCACCATCGTCCCTTTCTCCGCCATC
GGCATCGCAGACAGCTTGGAGATGGTTCTCGATGGTGATGAGCTGCTTCG
TCTCCCTATTGTGGGCGACTCTCTGAGGAGGCAAAGCGAGGGGCTGCCGA
CCGCTAGACTTGGAGATGGTTCTCGATGGTGATGAGCTGCTTCGTCTCCC
TATTGTGGGCGACTCTCTGAGGAGGCAAAGCGAGGGGCTGCCGACCGCTA
GA
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