mRNA_H-elongata_contig53540.12710.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig53540.12710.1 vs. uniprot
Match: A0A6H5JAP0_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JAP0_9PHAE) HSP 1 Score: 377 bits (968), Expect = 2.910e-128 Identity = 185/295 (62.71%), Postives = 227/295 (76.95%), Query Frame = 1
Query: 1 LEGTLMFLHVWKCGGTSLRKLMCRWAAGENLPCATVASCRSLSLEDKKICLVNHKVIFPEVQGEFIANQRVIAGHFHWG-------------------FQAYAAEPHLLITTLRNPLEVYVSGEQYLNRAATATLEGATVHVTSAMRKSL-TRSHPPGFLHRFVGRSVITTQDVRQATVEGAANMKTFFLVGVVEQYVGFISVLRALIDPEDNHAGMWDEHIEK-RLNVSPVESVNVLAQVDPVLVEKFNSTLSYQWLVYGHAVRLYKERCREVLPEYLHIKHCSVPSPPDAYVA 822
++GTLMFLHVWKCGGT+LR+LMC WA E LPCATVA C LSL+++K+CL+N+K+IFPE QGEFIA Q+V+AGHF WG FQ YAAEPH L+TTLRNPLE++VSGEQYLNRA TATL A V AMRKSL T + PPG+LHR VGRSV+T ++R+ATVEGA N+KTF+LVGVVEQY GF++VLRAL+DP+ H +W +E+ +LN SPV+S NVLA +DP LV++FNSTLSYQWL+YGHAVRL++ RC+EVLPEY H + CSV PP Y +
Sbjct: 59 MDGTLMFLHVWKCGGTTLRRLMCDWANSEGLPCATVAGCGHLSLKERKVCLLNYKLIFPEQQGEFIARQKVLAGHFRWGESRVTSACHTVTRTLFASGFQVYAAEPHWLVTTLRNPLELFVSGEQYLNRATTATLSKAVQVVERAMRKSLETPTQPPGYLHRLVGRSVVTNAEIREATVEGARNLKTFWLVGVVEQYGGFVAVLRALLDPDGLHDDLWRPQLEEHKLNASPVQSSNVLASLDPQLVKQFNSTLSYQWLMYGHAVRLFRARCQEVLPEYQHWEFCSVQQPPVEYTS 353
BLAST of mRNA_H-elongata_contig53540.12710.1 vs. uniprot
Match: A0A6H5JGJ5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGJ5_9PHAE) HSP 1 Score: 226 bits (576), Expect = 2.890e-69 Identity = 122/292 (41.78%), Postives = 174/292 (59.59%), Query Frame = 1
Query: 4 EGTLMFLHVWKCGGTSLRKLMCRWAAGENLPCATVASCRSLSLEDKKICLVNHKVIFPEVQGEFIANQRVIAGHFHWGFQAYAAEPHLLITTLRNPLEVYVSGEQYLNRAATATLEGATVHVTSAMRKSLTR-------------------SHPPGFLHRFVG--RSVITTQDVRQATVEGAANMKTFFLVGVVEQYVGFISVLRALIDPEDNHAGMWDEHIEKRLNVSPVESVNVLAQVDPVLVEKFNSTLSYQWLVYGHAVRLYKERCREVLPEYLHIKHCSVPSPPDAY 816
E T+MFLHV+KC G++LR+++ WA E+ A V C S E ++ICL + K++ VQ E ++ Q+V+AGHF WGFQ + P+L++T LRNPLEVYVS +QY ++ T TLE A V+ AMRK+L + GF+ R VG + + + + A + N++TF+LVG+VEQY GF+ VL L+DPE H +W + ++ N SP+ S +VLA +DP LV +FN +L+ QW VY AV L+ RCREVLP H + C+V P Y
Sbjct: 38 ESTVMFLHVFKCAGSTLRRMLVAWAEAEDELGAIVHRCNYTS-EAREICLAHFKLVDEPVQLELLSRQKVLAGHFLWGFQRHLRRPYLMVTALRNPLEVYVSAQQYTHKRKTKTLEKAQAFVSKAMRKTLRQYGDGPALGEEEMPFGGKSPQQIGGFVFRLVGINKKQLYGEKLEVAVTKAIENLETFWLVGLVEQYAGFVEVLELLLDPERKHVDVWQTYSTRQFNTSPLRSRDVLAALDPQLVREFNGSLALQWRVYEKAVALWDLRCREVLPVAKHEELCTVALPFSEY 328
BLAST of mRNA_H-elongata_contig53540.12710.1 vs. uniprot
Match: D7G7G7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7G7_ECTSI) HSP 1 Score: 207 bits (528), Expect = 4.790e-60 Identity = 110/292 (37.67%), Postives = 163/292 (55.82%), Query Frame = 1
Query: 10 TLMFLHVWKCGGTSLRKLMCRWAAGENLPCATVASCRSLSLEDKKICLVNHKVIFPEVQGEFIANQRVIAGHFHWGFQAYAAEPHLLITTLRNPLEVYVSGEQYLNRAATATLEGATVHVTSAMRKSLTR---------------SHPPGFLHRFVG--------RSVITTQDVRQATVEGAANMKTFFLVGVVEQYVGFISVLRALIDPEDNHAGMWDEHIEKRLNVSPVESVNVLAQVDPVLVEKFNSTLSYQWLVYGHAVRLYKERCREVLPEYLHIKHCSVPSPPDAY 816
TL+F+H+WKC G+SLR L+ WA + V C + + KICL +H +I Q FI +V+AGHF WGFQ + +P+++ TTLRNPLE++VSG+QYLNR A+ A V + +++ + + GF++R V ++ + + E N+ TF+LVGV+EQY GF++VL+A++DP + MW + + N SP + VLA +DP LV++FN TLS+QW VY +AV LYK RC ++L + C VP P Y
Sbjct: 55 TLLFMHLWKCAGSSLRHLLRDWAEAKEQDIGIVVRCTDVVSKTGKICLKHHSLINERFQAPFIRLHQVVAGHFTWGFQNHVRQPYVMFTTLRNPLELFVSGQQYLNRKASRHFAHAVSLVEDTILRAIKQHQLRGDVMVPEGMGNTKSVGFIYRLVDPVQANSTQEGLVGGKTLSAGAQEAKDNLDTFWLVGVIEQYQGFMAVLQAMMDPNKSERDMWKRYAVGKYNTSPQGAGKVLAAIDPALVQEFNETLSHQWEVYSYAVDLYKHRCHQML-HTRDLDMCEVPVAPSQY 345
BLAST of mRNA_H-elongata_contig53540.12710.1 vs. uniprot
Match: A0A6H5JGQ3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGQ3_9PHAE) HSP 1 Score: 204 bits (518), Expect = 3.940e-59 Identity = 120/305 (39.34%), Postives = 172/305 (56.39%), Query Frame = 1
Query: 4 EGTLMFLHVWKCGGTSLRKLMCRWAAGENLPCATVASCRSLSLEDKKICLVNHKVIFPEVQGEFIANQRVIAGHFHWGFQAYAAEPHLLITTLRNPLEVYVSGEQYLNRAATATLEGATV-----HVTSAMRKSL------------------------TRSHPP---GFLHRFVGRS---VITTQDVRQATVEGAANMKTFFLVGVVEQYVGFISVLRALIDPEDNHAGMWDEHIEKRLNVSPVESVNVLAQVDPVLVEKFNSTLSYQWLVYGHAVRLYKERCREVLPEYLHIKHCSVPSPPDA 813
+ T+MFLHV+KC G++LR++ WA E A V SC + E ICL H++I VQ + + Q+++AGHF WGFQ +P L++T+LRNPLE +VSG Q+L+ T TLE A+ V+ AM +L R P GF+ R VG+ + + +A E N++ F++VGVVEQY G +VL+ L+DP+ H +WD++ + N SPV+S VLA +DP LV +FN +L+ QW VY AV L+ RCREVLP +H C+V +PPD+
Sbjct: 151 DSTVMFLHVFKCAGSTLRQMFVDWAKAEGASGAIVTSCDEVQKEGV-ICLAKHELIKESVQMKMLLKQKILAGHFIWGFQRLVEKPFLMVTSLRNPLEAFVSGRQFLHPDMTETLEQASAAHAQAFVSYAMLNALGIDGPGHVAMLGERASLGHALLRGRRQSPDQLGGFIFRLVGQENAKKLHGLALSRAADEAMKNLEAFWVVGVVEQYAGLQAVLKRLLDPDLKHPALWDKYSYRHSNRSPVDSRYVLAAIDPSLVRQFNDSLALQWKVYEKAVELWGTRCREVLPITVHDAMCTV-APPDS 453
BLAST of mRNA_H-elongata_contig53540.12710.1 vs. uniprot
Match: A0A6H5KCZ6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCZ6_9PHAE) HSP 1 Score: 198 bits (504), Expect = 7.740e-58 Identity = 110/280 (39.29%), Postives = 172/280 (61.43%), Query Frame = 1
Query: 4 EGTLMFLHVWKCGGTSLRKLMCRWAAGENLPCATVASCRSLSLEDK-KICLVNHKVIFPEVQGEF-IANQRVIAGHFHWGFQAYAAEPHLLITTLRNPLEVYVSGEQYLNRAATATLEGATVHVTSAMRKSLTRSHPP--GFLHRFVGRSVITTQDVR--------QATVEGAAN-MKTFFLVGVVEQYVGFISVLRALIDPEDNHAGMWDEHIEKRLNVSPVESVNVLAQVDPVLVEKFNST-LSYQWLVYGHAVRLYKERCREVLPEYLHIKHCSVPS 801
T++FLHV+KC GT+LR+++ WA E L A V CRS + + +ICL + + ++ ++ +A +++AGHF W F+ Y P+L++TTLRNPLE++VS +Q++++A T TL+ + V +M+ L + P F+ RF+ + D + A V+ A + + TF++VGVVEQY GFI VL+ +DP+++H +W + N SPV S +VL+ +DP LV +FN+T L+ QW VY A++L+ RCRE+LP H CSVPS
Sbjct: 101 NSTILFLHVFKCAGTTLREVLTTWAKLEGLNGAIVEYCRSKTFTNVGRICLNSQNDLMDPIREKWLVAGSKLLAGHFLWDFRHYVTPPYLMVTTLRNPLELFVSSQQFMHKAETKTLDDSVAFVGQSMKSRLGWADPTDLAFIRRFLDSETANSYDPQVLYSDEEMSAMVQTAVDHLNTFYVVGVVEQYQGFIEVLKRTLDPDESHPKLWAAAVGVLDNGSPVHSGDVLSGIDPDLVREFNATALARQWQVYDVALKLWDSRCREILPPEDHEALCSVPS 380
BLAST of mRNA_H-elongata_contig53540.12710.1 vs. uniprot
Match: D8LHE4_ECTSI (Similar to heparin sulfate O-sulfotransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHE4_ECTSI) HSP 1 Score: 182 bits (463), Expect = 5.210e-53 Identity = 103/268 (38.43%), Postives = 161/268 (60.07%), Query Frame = 1
Query: 37 CGGTSLRKLMCRWAAGENLPCATVASCRSLSLEDK-KICLVNHKVIFPEVQGEF-IANQRVIAGHFHWGFQAYAAEPHLLITTLRNPLEVYVSGEQYLNRAATATLEGATVHVTSAMRKSLTRSHPP--GFLHRFVGRSVITTQDVR--------QATVEGAAN-MKTFFLVGVVEQYVGFISVLRALIDPEDNHAGMWDEHIEKRLNVSPVESVNVLAQVDPVLVEKFNST-LSYQWLVYGHAVRLYKERCREVLPEYLHIKHCSVP 798
C GT+LR+++ WA E A V CRS + + +ICL + + ++ ++ +A +++AGHF W F+ Y P+L++TTLRNPLE++VS +Q++++A T TL+ + V +MR L + P F+ RF+ + D + A V+ A + + TF++VGVVEQY GFI VL+ +DP+++H +W + + N SPV S +VL+ +DP LV +FN+T L QW VY A++L+ RCRE+LP H CSVP
Sbjct: 2 CAGTTLREVLTTWAKLEGWNGAIVEYCRSKTFTNAGRICLNSQNDLMNPIREKWLVAGSKLLAGHFLWDFRHYVTPPYLMVTTLRNPLELFVSSQQFMHKAETKTLDDSVAFVGQSMRSRLKWADPTDLAFIRRFLDSKTANSYDPQVMYSDEEMSAMVQTAVDHLNTFYVVGVVEQYQGFIEVLKRTLDPDESHPKLWAAAVGVKDNGSPVHSGDVLSGIDPDLVREFNATTLGRQWQVYDVALKLWDRRCREILPAEEHEALCSVP 269
BLAST of mRNA_H-elongata_contig53540.12710.1 vs. uniprot
Match: A0A6H5KPF0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPF0_9PHAE) HSP 1 Score: 178 bits (451), Expect = 5.740e-50 Identity = 111/288 (38.54%), Postives = 153/288 (53.12%), Query Frame = 1
Query: 10 TLMFLHVWKCGGTSLRKLMCRWAAGENLPCATVASCRSLSLEDK------KICLVNHKVIFPEVQGE---FIANQRVIAGHFHWGFQAYAAEPHLLITTLRNPLEVYVSGEQYLNRAATATLEGATVHVTSAMRK--SLTRSHPPGFLHRFVG---------RSVITTQDVRQATVEGAANMKTFFLVGVVEQYVGFISVLRALIDPEDNHAGMWDEHIEKRLNVSPVESVNVLAQVDPVLVEKFNST-LSYQWLVYGHAVRLYKERCREVLPEYLHIKHCSVPSPPD 810
T +FLHV+KC GTSLR++ +A A +A C E + + V H+ P+ + ++ +V+AGHF W F+ AA P+L++TTLRNPLE++VS Q+ +R T TL GAT VTS MR L GF+ F+ R V T + E ++ TF +VGVVEQY GFI VL+ +DP + +W + N SPV S +VL +DP LV +N T L QW VY A++L+ RCREVLP H ++C VP D
Sbjct: 91 TTLFLHVFKCAGTSLREVFMAFAKTNGWTGAVIAGCSKTQKEFQFHDPPGSVICVRHEDHRPKDENIGRWLVSGTKVLAGHFFWDFRLMAAPPYLMVTTLRNPLELFVSALQFKHRDETRTLAGATRFVTSQMRTILGLEGLGQLGFIRVFLNDTGAVGYNPRGVYTHNETWAMATESVEHLNTFLVVGVVEQYEGFIEVLKHTLDPGLENPSVWTTGANVQNNKSPVPSRDVLRNMDPYLVRLYNETRLDLQWKVYEVALQLWDSRCREVLPPSDHERYCDVPRHAD 378
BLAST of mRNA_H-elongata_contig53540.12710.1 vs. uniprot
Match: D8LIP4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIP4_ECTSI) HSP 1 Score: 173 bits (438), Expect = 2.120e-48 Identity = 100/234 (42.74%), Postives = 138/234 (58.97%), Query Frame = 1
Query: 133 EDKKICLVNHKVIFPEVQGEF-IANQRVIAGHFHWGFQAYAAEPHLLITTLRNPLEVYVSGEQYLNRAATATLEGATVHVTSAMRKSLTRSHPP--GFLHRFVGRS--------VITTQDVRQATVEGAA-NMKTFFLVGVVEQYVGFISVLRALIDPEDNHAGMWDEHIEKRLNVSPVESVNVLAQVDPVLVEKFNSTLSYQWLVYGHAVRLYKERCREVLPEYLHIKHCSVP 798
E ICL + + + +A RV+AGHF W + Y PHLLIT LR+PLE++VS +Q+ +R TA+LE A V S MR L P GF+ RF+G ++ T++ A AA ++ F++VGVVEQY GF++VL+ +DPE H +W+ E N SPV S +VL ++DP LV +FN+TLS+QW VY A++L+ RCREVLP H CSVP
Sbjct: 107 ESHVICLNDQNALRDSASQRWEVAGTRVLAGHFLWDLRQYVTPPHLLITMLRDPLELFVSAKQFKHREETASLEAAADFVASNMRGRLGWEDPSDIGFVRRFLGTDAANSYDPQLVYTKEQSSAMASTAAEHLSNFWVVGVVEQYAGFVNVLQHTLDPELEHPRLWEAASEVNNNGSPVHSRDVLDRIDPDLVREFNATLSFQWQVYDVALQLWDSRCREVLPLQDHSSLCSVP 340
BLAST of mRNA_H-elongata_contig53540.12710.1 vs. uniprot
Match: D7FJ87_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ87_ECTSI) HSP 1 Score: 157 bits (397), Expect = 3.840e-43 Identity = 90/217 (41.47%), Postives = 123/217 (56.68%), Query Frame = 1
Query: 196 IANQRVIAGHFHWGFQAYAAEPHLLITTLRNPLEVYVSGEQYLNRAATATLEGATVHVTSAMRK--SLTRSHPPGFLHRFVG---------RSVITTQDVRQATVEGAANMKTFFLVGVVEQYVGFISVLRALIDPEDNHAGMWDEHIEKRLNVSPVESVNVLAQVDPVLVEKFNST-LSYQWLVYGHAVRLYKERCREVLPEYLHIKHCSVPSPPD 810
++ +V+AGHF W F+ AA P+L++TTLRNPLE++VS Q+ +R T TL GAT VTS MR L GF+ F+ R V T + E ++ TF +VGVVEQY GF+ VL+ +DP + +W + + N SPV S +VL +DP LV +N T L QW VY A++L+ RCREVLP H ++C VP D
Sbjct: 53 VSGTKVLAGHFFWDFRLMAAPPYLMVTTLRNPLELFVSALQFKHRDETRTLAGATRFVTSQMRTILGLEGLGQLGFIRVFLNDTGAVGYNPRGVYTHNETWAMAAESVEHLNTFLVVGVVEQYEGFVEVLKHTLDPGLENPSVWTTGAKVQNNKSPVSSRDVLRNIDPYLVRLYNETRLDLQWKVYEVALQLWDSRCREVLPRSDHERYCDVPRHAD 269
BLAST of mRNA_H-elongata_contig53540.12710.1 vs. uniprot
Match: A0A6H5KGA9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGA9_9PHAE) HSP 1 Score: 157 bits (396), Expect = 1.530e-40 Identity = 96/269 (35.69%), Postives = 136/269 (50.56%), Query Frame = 1
Query: 10 TLMFLHVWKCGGTSLRKLMCRWAAGENLPCATVASCRSLSLEDKKICLVNHKVIFPEVQGEFIANQRVIAGHFHWGFQAYAAEPHLLITTLRNPLEVYVSGEQYLNRAATATLEGATVHVTSAMRKSLTRSHPPGFLHRFVGRSVITTQDVRQATVEGAANMKTFFLVGVVEQYVGFISVLRALIDPEDNHAGMWDEHIEKRLNVSPVESVNVLAQVDPVLVEKFNSTLSYQWLVYGHAVRLYKERCREVLPEYLHIKHCSVPSPPDAY 816
TL+F+H+WKC G+SLR L+ WA + V C + + KICL H +I Q FI +V+AGHF WG L P E S + Y + T+A + ++ + P G VG ++ E N+ TF+LVGV+EQY GF++VL+A++DP + MW + + N SP + VLA +DP LV++FN TLS+QW VY +AV LYK RCR++L + C VP P Y
Sbjct: 173 TLLFMHLWKCAGSSLRHLLRDWAEAKGQYIGIVVRCTDVVSKTGKICLKRHSLINERFQAPFIRLHQVVAGHFTWG--------------LHRPKEC--SEKWYSDME------------TTAFDQVVSTAEPEGG----VGGKTLSA-----GAQEAMDNLDTFWLVGVIEQYQGFMAVLQAMMDPNKSERDMWKRYAVGKYNTSPQGAGKVLAAIDPALVQEFNETLSHQWEVYSYAVDLYKHRCRQML-HTRDLDMCEVPVAPSQY 403 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig53540.12710.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 12
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig53540.12710.1 >prot_H-elongata_contig53540.12710.1 ID=prot_H-elongata_contig53540.12710.1|Name=mRNA_H-elongata_contig53540.12710.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=274bp MFLHVWKCGGTSLRKLMCRWAAGENLPCATVASCRSLSLEDKKICLVNHKback to top mRNA from alignment at H-elongata_contig53540:1830..3732+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig53540.12710.1 ID=mRNA_H-elongata_contig53540.12710.1|Name=mRNA_H-elongata_contig53540.12710.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1903bp|location=Sequence derived from alignment at H-elongata_contig53540:1830..3732+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig53540:1830..3732+ >mRNA_H-elongata_contig53540.12710.1 ID=mRNA_H-elongata_contig53540.12710.1|Name=mRNA_H-elongata_contig53540.12710.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1644bp|location=Sequence derived from alignment at H-elongata_contig53540:1830..3732+ (Himanthalia elongata Himel1 dioecious)back to top |