mRNA_H-elongata_contig53540.12710.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig53540.12710.1
Unique NamemRNA_H-elongata_contig53540.12710.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig53540.12710.1 vs. uniprot
Match: A0A6H5JAP0_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JAP0_9PHAE)

HSP 1 Score: 377 bits (968), Expect = 2.910e-128
Identity = 185/295 (62.71%), Postives = 227/295 (76.95%), Query Frame = 1
Query:    1 LEGTLMFLHVWKCGGTSLRKLMCRWAAGENLPCATVASCRSLSLEDKKICLVNHKVIFPEVQGEFIANQRVIAGHFHWG-------------------FQAYAAEPHLLITTLRNPLEVYVSGEQYLNRAATATLEGATVHVTSAMRKSL-TRSHPPGFLHRFVGRSVITTQDVRQATVEGAANMKTFFLVGVVEQYVGFISVLRALIDPEDNHAGMWDEHIEK-RLNVSPVESVNVLAQVDPVLVEKFNSTLSYQWLVYGHAVRLYKERCREVLPEYLHIKHCSVPSPPDAYVA 822
            ++GTLMFLHVWKCGGT+LR+LMC WA  E LPCATVA C  LSL+++K+CL+N+K+IFPE QGEFIA Q+V+AGHF WG                   FQ YAAEPH L+TTLRNPLE++VSGEQYLNRA TATL  A   V  AMRKSL T + PPG+LHR VGRSV+T  ++R+ATVEGA N+KTF+LVGVVEQY GF++VLRAL+DP+  H  +W   +E+ +LN SPV+S NVLA +DP LV++FNSTLSYQWL+YGHAVRL++ RC+EVLPEY H + CSV  PP  Y +
Sbjct:   59 MDGTLMFLHVWKCGGTTLRRLMCDWANSEGLPCATVAGCGHLSLKERKVCLLNYKLIFPEQQGEFIARQKVLAGHFRWGESRVTSACHTVTRTLFASGFQVYAAEPHWLVTTLRNPLELFVSGEQYLNRATTATLSKAVQVVERAMRKSLETPTQPPGYLHRLVGRSVVTNAEIREATVEGARNLKTFWLVGVVEQYGGFVAVLRALLDPDGLHDDLWRPQLEEHKLNASPVQSSNVLASLDPQLVKQFNSTLSYQWLMYGHAVRLFRARCQEVLPEYQHWEFCSVQQPPVEYTS 353          
BLAST of mRNA_H-elongata_contig53540.12710.1 vs. uniprot
Match: A0A6H5JGJ5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGJ5_9PHAE)

HSP 1 Score: 226 bits (576), Expect = 2.890e-69
Identity = 122/292 (41.78%), Postives = 174/292 (59.59%), Query Frame = 1
Query:    4 EGTLMFLHVWKCGGTSLRKLMCRWAAGENLPCATVASCRSLSLEDKKICLVNHKVIFPEVQGEFIANQRVIAGHFHWGFQAYAAEPHLLITTLRNPLEVYVSGEQYLNRAATATLEGATVHVTSAMRKSLTR-------------------SHPPGFLHRFVG--RSVITTQDVRQATVEGAANMKTFFLVGVVEQYVGFISVLRALIDPEDNHAGMWDEHIEKRLNVSPVESVNVLAQVDPVLVEKFNSTLSYQWLVYGHAVRLYKERCREVLPEYLHIKHCSVPSPPDAY 816
            E T+MFLHV+KC G++LR+++  WA  E+   A V  C   S E ++ICL + K++   VQ E ++ Q+V+AGHF WGFQ +   P+L++T LRNPLEVYVS +QY ++  T TLE A   V+ AMRK+L +                       GF+ R VG  +  +  + +  A  +   N++TF+LVG+VEQY GF+ VL  L+DPE  H  +W  +  ++ N SP+ S +VLA +DP LV +FN +L+ QW VY  AV L+  RCREVLP   H + C+V  P   Y
Sbjct:   38 ESTVMFLHVFKCAGSTLRRMLVAWAEAEDELGAIVHRCNYTS-EAREICLAHFKLVDEPVQLELLSRQKVLAGHFLWGFQRHLRRPYLMVTALRNPLEVYVSAQQYTHKRKTKTLEKAQAFVSKAMRKTLRQYGDGPALGEEEMPFGGKSPQQIGGFVFRLVGINKKQLYGEKLEVAVTKAIENLETFWLVGLVEQYAGFVEVLELLLDPERKHVDVWQTYSTRQFNTSPLRSRDVLAALDPQLVREFNGSLALQWRVYEKAVALWDLRCREVLPVAKHEELCTVALPFSEY 328          
BLAST of mRNA_H-elongata_contig53540.12710.1 vs. uniprot
Match: D7G7G7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7G7_ECTSI)

HSP 1 Score: 207 bits (528), Expect = 4.790e-60
Identity = 110/292 (37.67%), Postives = 163/292 (55.82%), Query Frame = 1
Query:   10 TLMFLHVWKCGGTSLRKLMCRWAAGENLPCATVASCRSLSLEDKKICLVNHKVIFPEVQGEFIANQRVIAGHFHWGFQAYAAEPHLLITTLRNPLEVYVSGEQYLNRAATATLEGATVHVTSAMRKSLTR---------------SHPPGFLHRFVG--------RSVITTQDVRQATVEGAANMKTFFLVGVVEQYVGFISVLRALIDPEDNHAGMWDEHIEKRLNVSPVESVNVLAQVDPVLVEKFNSTLSYQWLVYGHAVRLYKERCREVLPEYLHIKHCSVPSPPDAY 816
            TL+F+H+WKC G+SLR L+  WA  +      V  C  +  +  KICL +H +I    Q  FI   +V+AGHF WGFQ +  +P+++ TTLRNPLE++VSG+QYLNR A+     A   V   + +++ +               +   GF++R V           ++  + +     E   N+ TF+LVGV+EQY GF++VL+A++DP  +   MW  +   + N SP  +  VLA +DP LV++FN TLS+QW VY +AV LYK RC ++L     +  C VP  P  Y
Sbjct:   55 TLLFMHLWKCAGSSLRHLLRDWAEAKEQDIGIVVRCTDVVSKTGKICLKHHSLINERFQAPFIRLHQVVAGHFTWGFQNHVRQPYVMFTTLRNPLELFVSGQQYLNRKASRHFAHAVSLVEDTILRAIKQHQLRGDVMVPEGMGNTKSVGFIYRLVDPVQANSTQEGLVGGKTLSAGAQEAKDNLDTFWLVGVIEQYQGFMAVLQAMMDPNKSERDMWKRYAVGKYNTSPQGAGKVLAAIDPALVQEFNETLSHQWEVYSYAVDLYKHRCHQML-HTRDLDMCEVPVAPSQY 345          
BLAST of mRNA_H-elongata_contig53540.12710.1 vs. uniprot
Match: A0A6H5JGQ3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGQ3_9PHAE)

HSP 1 Score: 204 bits (518), Expect = 3.940e-59
Identity = 120/305 (39.34%), Postives = 172/305 (56.39%), Query Frame = 1
Query:    4 EGTLMFLHVWKCGGTSLRKLMCRWAAGENLPCATVASCRSLSLEDKKICLVNHKVIFPEVQGEFIANQRVIAGHFHWGFQAYAAEPHLLITTLRNPLEVYVSGEQYLNRAATATLEGATV-----HVTSAMRKSL------------------------TRSHPP---GFLHRFVGRS---VITTQDVRQATVEGAANMKTFFLVGVVEQYVGFISVLRALIDPEDNHAGMWDEHIEKRLNVSPVESVNVLAQVDPVLVEKFNSTLSYQWLVYGHAVRLYKERCREVLPEYLHIKHCSVPSPPDA 813
            + T+MFLHV+KC G++LR++   WA  E    A V SC  +  E   ICL  H++I   VQ + +  Q+++AGHF WGFQ    +P L++T+LRNPLE +VSG Q+L+   T TLE A+       V+ AM  +L                         R  P    GF+ R VG+     +    + +A  E   N++ F++VGVVEQY G  +VL+ L+DP+  H  +WD++  +  N SPV+S  VLA +DP LV +FN +L+ QW VY  AV L+  RCREVLP  +H   C+V +PPD+
Sbjct:  151 DSTVMFLHVFKCAGSTLRQMFVDWAKAEGASGAIVTSCDEVQKEGV-ICLAKHELIKESVQMKMLLKQKILAGHFIWGFQRLVEKPFLMVTSLRNPLEAFVSGRQFLHPDMTETLEQASAAHAQAFVSYAMLNALGIDGPGHVAMLGERASLGHALLRGRRQSPDQLGGFIFRLVGQENAKKLHGLALSRAADEAMKNLEAFWVVGVVEQYAGLQAVLKRLLDPDLKHPALWDKYSYRHSNRSPVDSRYVLAAIDPSLVRQFNDSLALQWKVYEKAVELWGTRCREVLPITVHDAMCTV-APPDS 453          
BLAST of mRNA_H-elongata_contig53540.12710.1 vs. uniprot
Match: A0A6H5KCZ6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCZ6_9PHAE)

HSP 1 Score: 198 bits (504), Expect = 7.740e-58
Identity = 110/280 (39.29%), Postives = 172/280 (61.43%), Query Frame = 1
Query:    4 EGTLMFLHVWKCGGTSLRKLMCRWAAGENLPCATVASCRSLSLEDK-KICLVNHKVIFPEVQGEF-IANQRVIAGHFHWGFQAYAAEPHLLITTLRNPLEVYVSGEQYLNRAATATLEGATVHVTSAMRKSLTRSHPP--GFLHRFVGRSVITTQDVR--------QATVEGAAN-MKTFFLVGVVEQYVGFISVLRALIDPEDNHAGMWDEHIEKRLNVSPVESVNVLAQVDPVLVEKFNST-LSYQWLVYGHAVRLYKERCREVLPEYLHIKHCSVPS 801
              T++FLHV+KC GT+LR+++  WA  E L  A V  CRS +  +  +ICL +   +   ++ ++ +A  +++AGHF W F+ Y   P+L++TTLRNPLE++VS +Q++++A T TL+ +   V  +M+  L  + P    F+ RF+      + D +         A V+ A + + TF++VGVVEQY GFI VL+  +DP+++H  +W   +    N SPV S +VL+ +DP LV +FN+T L+ QW VY  A++L+  RCRE+LP   H   CSVPS
Sbjct:  101 NSTILFLHVFKCAGTTLREVLTTWAKLEGLNGAIVEYCRSKTFTNVGRICLNSQNDLMDPIREKWLVAGSKLLAGHFLWDFRHYVTPPYLMVTTLRNPLELFVSSQQFMHKAETKTLDDSVAFVGQSMKSRLGWADPTDLAFIRRFLDSETANSYDPQVLYSDEEMSAMVQTAVDHLNTFYVVGVVEQYQGFIEVLKRTLDPDESHPKLWAAAVGVLDNGSPVHSGDVLSGIDPDLVREFNATALARQWQVYDVALKLWDSRCREILPPEDHEALCSVPS 380          
BLAST of mRNA_H-elongata_contig53540.12710.1 vs. uniprot
Match: D8LHE4_ECTSI (Similar to heparin sulfate O-sulfotransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHE4_ECTSI)

HSP 1 Score: 182 bits (463), Expect = 5.210e-53
Identity = 103/268 (38.43%), Postives = 161/268 (60.07%), Query Frame = 1
Query:   37 CGGTSLRKLMCRWAAGENLPCATVASCRSLSLEDK-KICLVNHKVIFPEVQGEF-IANQRVIAGHFHWGFQAYAAEPHLLITTLRNPLEVYVSGEQYLNRAATATLEGATVHVTSAMRKSLTRSHPP--GFLHRFVGRSVITTQDVR--------QATVEGAAN-MKTFFLVGVVEQYVGFISVLRALIDPEDNHAGMWDEHIEKRLNVSPVESVNVLAQVDPVLVEKFNST-LSYQWLVYGHAVRLYKERCREVLPEYLHIKHCSVP 798
            C GT+LR+++  WA  E    A V  CRS +  +  +ICL +   +   ++ ++ +A  +++AGHF W F+ Y   P+L++TTLRNPLE++VS +Q++++A T TL+ +   V  +MR  L  + P    F+ RF+      + D +         A V+ A + + TF++VGVVEQY GFI VL+  +DP+++H  +W   +  + N SPV S +VL+ +DP LV +FN+T L  QW VY  A++L+  RCRE+LP   H   CSVP
Sbjct:    2 CAGTTLREVLTTWAKLEGWNGAIVEYCRSKTFTNAGRICLNSQNDLMNPIREKWLVAGSKLLAGHFLWDFRHYVTPPYLMVTTLRNPLELFVSSQQFMHKAETKTLDDSVAFVGQSMRSRLKWADPTDLAFIRRFLDSKTANSYDPQVMYSDEEMSAMVQTAVDHLNTFYVVGVVEQYQGFIEVLKRTLDPDESHPKLWAAAVGVKDNGSPVHSGDVLSGIDPDLVREFNATTLGRQWQVYDVALKLWDRRCREILPAEEHEALCSVP 269          
BLAST of mRNA_H-elongata_contig53540.12710.1 vs. uniprot
Match: A0A6H5KPF0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPF0_9PHAE)

HSP 1 Score: 178 bits (451), Expect = 5.740e-50
Identity = 111/288 (38.54%), Postives = 153/288 (53.12%), Query Frame = 1
Query:   10 TLMFLHVWKCGGTSLRKLMCRWAAGENLPCATVASCRSLSLEDK------KICLVNHKVIFPEVQGE---FIANQRVIAGHFHWGFQAYAAEPHLLITTLRNPLEVYVSGEQYLNRAATATLEGATVHVTSAMRK--SLTRSHPPGFLHRFVG---------RSVITTQDVRQATVEGAANMKTFFLVGVVEQYVGFISVLRALIDPEDNHAGMWDEHIEKRLNVSPVESVNVLAQVDPVLVEKFNST-LSYQWLVYGHAVRLYKERCREVLPEYLHIKHCSVPSPPD 810
            T +FLHV+KC GTSLR++   +A       A +A C     E +       +  V H+   P+ +      ++  +V+AGHF W F+  AA P+L++TTLRNPLE++VS  Q+ +R  T TL GAT  VTS MR    L      GF+  F+          R V T  +      E   ++ TF +VGVVEQY GFI VL+  +DP   +  +W      + N SPV S +VL  +DP LV  +N T L  QW VY  A++L+  RCREVLP   H ++C VP   D
Sbjct:   91 TTLFLHVFKCAGTSLREVFMAFAKTNGWTGAVIAGCSKTQKEFQFHDPPGSVICVRHEDHRPKDENIGRWLVSGTKVLAGHFFWDFRLMAAPPYLMVTTLRNPLELFVSALQFKHRDETRTLAGATRFVTSQMRTILGLEGLGQLGFIRVFLNDTGAVGYNPRGVYTHNETWAMATESVEHLNTFLVVGVVEQYEGFIEVLKHTLDPGLENPSVWTTGANVQNNKSPVPSRDVLRNMDPYLVRLYNETRLDLQWKVYEVALQLWDSRCREVLPPSDHERYCDVPRHAD 378          
BLAST of mRNA_H-elongata_contig53540.12710.1 vs. uniprot
Match: D8LIP4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIP4_ECTSI)

HSP 1 Score: 173 bits (438), Expect = 2.120e-48
Identity = 100/234 (42.74%), Postives = 138/234 (58.97%), Query Frame = 1
Query:  133 EDKKICLVNHKVIFPEVQGEF-IANQRVIAGHFHWGFQAYAAEPHLLITTLRNPLEVYVSGEQYLNRAATATLEGATVHVTSAMRKSLTRSHPP--GFLHRFVGRS--------VITTQDVRQATVEGAA-NMKTFFLVGVVEQYVGFISVLRALIDPEDNHAGMWDEHIEKRLNVSPVESVNVLAQVDPVLVEKFNSTLSYQWLVYGHAVRLYKERCREVLPEYLHIKHCSVP 798
            E   ICL +   +       + +A  RV+AGHF W  + Y   PHLLIT LR+PLE++VS +Q+ +R  TA+LE A   V S MR  L    P   GF+ RF+G          ++ T++   A    AA ++  F++VGVVEQY GF++VL+  +DPE  H  +W+   E   N SPV S +VL ++DP LV +FN+TLS+QW VY  A++L+  RCREVLP   H   CSVP
Sbjct:  107 ESHVICLNDQNALRDSASQRWEVAGTRVLAGHFLWDLRQYVTPPHLLITMLRDPLELFVSAKQFKHREETASLEAAADFVASNMRGRLGWEDPSDIGFVRRFLGTDAANSYDPQLVYTKEQSSAMASTAAEHLSNFWVVGVVEQYAGFVNVLQHTLDPELEHPRLWEAASEVNNNGSPVHSRDVLDRIDPDLVREFNATLSFQWQVYDVALQLWDSRCREVLPLQDHSSLCSVP 340          
BLAST of mRNA_H-elongata_contig53540.12710.1 vs. uniprot
Match: D7FJ87_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ87_ECTSI)

HSP 1 Score: 157 bits (397), Expect = 3.840e-43
Identity = 90/217 (41.47%), Postives = 123/217 (56.68%), Query Frame = 1
Query:  196 IANQRVIAGHFHWGFQAYAAEPHLLITTLRNPLEVYVSGEQYLNRAATATLEGATVHVTSAMRK--SLTRSHPPGFLHRFVG---------RSVITTQDVRQATVEGAANMKTFFLVGVVEQYVGFISVLRALIDPEDNHAGMWDEHIEKRLNVSPVESVNVLAQVDPVLVEKFNST-LSYQWLVYGHAVRLYKERCREVLPEYLHIKHCSVPSPPD 810
            ++  +V+AGHF W F+  AA P+L++TTLRNPLE++VS  Q+ +R  T TL GAT  VTS MR    L      GF+  F+          R V T  +      E   ++ TF +VGVVEQY GF+ VL+  +DP   +  +W    + + N SPV S +VL  +DP LV  +N T L  QW VY  A++L+  RCREVLP   H ++C VP   D
Sbjct:   53 VSGTKVLAGHFFWDFRLMAAPPYLMVTTLRNPLELFVSALQFKHRDETRTLAGATRFVTSQMRTILGLEGLGQLGFIRVFLNDTGAVGYNPRGVYTHNETWAMAAESVEHLNTFLVVGVVEQYEGFVEVLKHTLDPGLENPSVWTTGAKVQNNKSPVSSRDVLRNIDPYLVRLYNETRLDLQWKVYEVALQLWDSRCREVLPRSDHERYCDVPRHAD 269          
BLAST of mRNA_H-elongata_contig53540.12710.1 vs. uniprot
Match: A0A6H5KGA9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGA9_9PHAE)

HSP 1 Score: 157 bits (396), Expect = 1.530e-40
Identity = 96/269 (35.69%), Postives = 136/269 (50.56%), Query Frame = 1
Query:   10 TLMFLHVWKCGGTSLRKLMCRWAAGENLPCATVASCRSLSLEDKKICLVNHKVIFPEVQGEFIANQRVIAGHFHWGFQAYAAEPHLLITTLRNPLEVYVSGEQYLNRAATATLEGATVHVTSAMRKSLTRSHPPGFLHRFVGRSVITTQDVRQATVEGAANMKTFFLVGVVEQYVGFISVLRALIDPEDNHAGMWDEHIEKRLNVSPVESVNVLAQVDPVLVEKFNSTLSYQWLVYGHAVRLYKERCREVLPEYLHIKHCSVPSPPDAY 816
            TL+F+H+WKC G+SLR L+  WA  +      V  C  +  +  KICL  H +I    Q  FI   +V+AGHF WG              L  P E   S + Y +              T+A  + ++ + P G     VG   ++         E   N+ TF+LVGV+EQY GF++VL+A++DP  +   MW  +   + N SP  +  VLA +DP LV++FN TLS+QW VY +AV LYK RCR++L     +  C VP  P  Y
Sbjct:  173 TLLFMHLWKCAGSSLRHLLRDWAEAKGQYIGIVVRCTDVVSKTGKICLKRHSLINERFQAPFIRLHQVVAGHFTWG--------------LHRPKEC--SEKWYSDME------------TTAFDQVVSTAEPEGG----VGGKTLSA-----GAQEAMDNLDTFWLVGVIEQYQGFMAVLQAMMDPNKSERDMWKRYAVGKYNTSPQGAGKVLAAIDPALVQEFNETLSHQWEVYSYAVDLYKHRCRQML-HTRDLDMCEVPVAPSQY 403          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig53540.12710.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
A0A6H5JAP0_9PHAE2.910e-12862.71Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5JGJ5_9PHAE2.890e-6941.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G7G7_ECTSI4.790e-6037.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JGQ3_9PHAE3.940e-5939.34Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KCZ6_9PHAE7.740e-5839.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LHE4_ECTSI5.210e-5338.43Similar to heparin sulfate O-sulfotransferase n=1 ... [more]
A0A6H5KPF0_9PHAE5.740e-5038.54Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LIP4_ECTSI2.120e-4842.74Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FJ87_ECTSI3.840e-4341.47Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KGA9_9PHAE1.530e-4035.69Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig53540contigH-elongata_contig53540:1830..3732 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score174.9
Seed ortholog evalue5.3e-41
Seed eggNOG ortholog2880.D8LIP4
Preferred nameTMEM256
EggNOG free text desc.Protein of unknown function (DUF423)
EggNOG OGsCOG2363@1,KOG3472@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorymitochondrion
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-11_000120.1
Exons3
Model size837
Cds size822
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig53540.12710.1prot_H-elongata_contig53540.12710.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig53540 1845..3732 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930873.5909078-UTR-H-elongata_contig53540:1829..18441622930873.5909078-UTR-H-elongata_contig53540:1829..1844Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig53540 1830..1844 +
1691679606.5569768-UTR-H-elongata_contig53540:1829..18441691679606.5569768-UTR-H-elongata_contig53540:1829..1844Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig53540 1830..1844 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930873.6037123-CDS-H-elongata_contig53540:1844..19641622930873.6037123-CDS-H-elongata_contig53540:1844..1964Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53540 1845..1964 +
1691679606.5745518-CDS-H-elongata_contig53540:1844..19641691679606.5745518-CDS-H-elongata_contig53540:1844..1964Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53540 1845..1964 +
1622930873.6202054-CDS-H-elongata_contig53540:2496..25961622930873.6202054-CDS-H-elongata_contig53540:2496..2596Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53540 2497..2596 +
1691679606.5874176-CDS-H-elongata_contig53540:2496..25961691679606.5874176-CDS-H-elongata_contig53540:2496..2596Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53540 2497..2596 +
1622930873.6317296-CDS-H-elongata_contig53540:3130..37321622930873.6317296-CDS-H-elongata_contig53540:3130..3732Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53540 3131..3732 +
1691679606.5995655-CDS-H-elongata_contig53540:3130..37321691679606.5995655-CDS-H-elongata_contig53540:3130..3732Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53540 3131..3732 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig53540.12710.1

>prot_H-elongata_contig53540.12710.1 ID=prot_H-elongata_contig53540.12710.1|Name=mRNA_H-elongata_contig53540.12710.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=274bp
MFLHVWKCGGTSLRKLMCRWAAGENLPCATVASCRSLSLEDKKICLVNHK
VIFPEVQGEFIANQRVIAGHFHWGFQAYAAEPHLLITTLRNPLEVYVSGE
QYLNRAATATLEGATVHVTSAMRKSLTRSHPPGFLHRFVGRSVITTQDVR
QATVEGAANMKTFFLVGVVEQYVGFISVLRALIDPEDNHAGMWDEHIEKR
LNVSPVESVNVLAQVDPVLVEKFNSTLSYQWLVYGHAVRLYKERCREVLP
EYLHIKHCSVPSPPDAYVASVHI*
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mRNA from alignment at H-elongata_contig53540:1830..3732+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig53540.12710.1 ID=mRNA_H-elongata_contig53540.12710.1|Name=mRNA_H-elongata_contig53540.12710.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1903bp|location=Sequence derived from alignment at H-elongata_contig53540:1830..3732+ (Himanthalia elongata Himel1 dioecious)
CTGGAAGGAACGCTAATGTTCCTGCACGTGTGGAAGTGTGGCGGAACTTC CCTGCGAAAGCTTATGTGTCGCTGGGCGGCCGGGGAGAACTTGCCATGCG CCACGGTGGCGTCTTGTAGAAGTCTCTCACTCGAGGTATTATAGCGAAAT ATTGTACCGGTAGCTACATACCACGTACCAGTAGCTATCTTTCTGTACGA GCACCGTATACAAGATTCTATGTATACTCCGTTTCTCGATAACGAAGCCC CCAACCTAGAACGAGTCGAAATTAATATGGAATGTGGAGTAGTTGATTGC CTTACGTTCGTTGTCAGCGGAGGAGACGATCCGGAAGTATTCCATGTTTC CACATCCTTGGATCTAGTCTGTTTTTTTCAACCATAGGACCAATTGCCGT TGAACGTAACTTTTTTTTGTGATGTTTCCATGTAACGACACAATTCTATA CCTTACCAAGTTTGCATATCTTTTTAACTTGAGCAAACTACTTGGCGTCG CGGTCAAGTGTTTAAATGTCTTTATATCTGGCTACCCTGACGATGGGCTT CTGGTGGCACAATTCGGAGAGATAGTGTGGTAATTATGTGTGCTGCATAA GCATAAGCTGGAGGGGCATCGCAAGTATGATATTGTCCTTTGATGCGTCC CTTACGTTCTTTCACAGGACAAGAAGATTTGTTTAGTGAACCACAAGGTG ATCTTCCCGGAAGTTCAGGGAGAGTTCATCGCCAATCAGAGAGTGATCGC CGGGCACTTCCATTGGGGTGAGTCTCCCTGCCACTAAACATCGTGGGACA GAGCGCCTTGGCGAACTTGTACCTACTTGAATGCACGAACGTTTCTCAGG GGGCCTGTGAATTGTCTATTGATAGCTCTAGTGACCTACAATAGTGTTAC CTAGTAACCTATTCCTACCTTGGGGACTGTACAGACAAAGTTAATCCTGA CGTATTTTCTCCGAATCGTCAGACGAAGGAAGCGACCGTGGTAGGTATTG ATATATATAATGTTATTGATATAGATAATGTTTTGCTCTTTAATTTATCT CGACAACCTGGACGAAATGTCTTGCCGTTGTTCAGGGAGAAATATAATAT ATATGCCCACGTTTTTGCTTCTTATCTGGCCCAATATGACACCCACAACC AAGTGTACCGCAGCATAAAATCTGTAAATTTCTATTGCATCACATGCATG TGGCGTGTTAAGATCATGTGAGAATGCGAGCATGCACGTATTGCGTGTCC CTGTGAGGTGCTCTGACCCCACCACCCCCTTTCTATGATATACTGTATCA GGTTTCCAAGCTTATGCGGCGGAACCGCATCTGCTCATCACGACACTTCG AAATCCCCTGGAGGTCTACGTCTCCGGCGAGCAGTACCTCAATCGCGCAG CCACGGCAACCCTCGAGGGTGCGACGGTGCACGTCACGAGCGCCATGCGC AAGTCGCTTACGCGCAGCCACCCACCGGGGTTCTTGCATCGATTTGTCGG ACGCAGCGTGATCACGACCCAGGACGTGCGTCAGGCAACAGTGGAAGGCG CAGCAAACATGAAAACCTTCTTCTTGGTTGGCGTGGTCGAGCAGTACGTC GGCTTTATTTCCGTGTTGCGCGCCCTCATCGATCCCGAAGATAATCACGC GGGGATGTGGGACGAACACATCGAGAAACGGTTGAATGTATCGCCGGTGG AATCGGTAAATGTTCTGGCACAAGTCGACCCAGTGTTGGTGGAGAAGTTT AATTCCACCTTGAGCTACCAGTGGTTAGTGTACGGCCACGCCGTTCGCCT GTACAAAGAGAGGTGCCGAGAGGTTTTACCGGAATATTTACATATCAAGC ACTGCAGCGTGCCAAGCCCTCCCGACGCTTACGTAGCGTCAGTGCATATA TAA
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Coding sequence (CDS) from alignment at H-elongata_contig53540:1830..3732+

>mRNA_H-elongata_contig53540.12710.1 ID=mRNA_H-elongata_contig53540.12710.1|Name=mRNA_H-elongata_contig53540.12710.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1644bp|location=Sequence derived from alignment at H-elongata_contig53540:1830..3732+ (Himanthalia elongata Himel1 dioecious)
ATGTTCCTGCACGTGTGGAAGTGTGGCGGAACTTCCCTGCGAAAGCTTAT
GTGTCGCTGGGCGGCCGGGGAGAACTTGCCATGCGCCACGGTGGCGTCTT
GTAGAAGTCTCTCACTCGAGATGTTCCTGCACGTGTGGAAGTGTGGCGGA
ACTTCCCTGCGAAAGCTTATGTGTCGCTGGGCGGCCGGGGAGAACTTGCC
ATGCGCCACGGTGGCGTCTTGTAGAAGTCTCTCACTCGAGGACAAGAAGA
TTTGTTTAGTGAACCACAAGGTGATCTTCCCGGAAGTTCAGGGAGAGTTC
ATCGCCAATCAGAGAGTGATCGCCGGGCACTTCCATTGGGGACAAGAAGA
TTTGTTTAGTGAACCACAAGGTGATCTTCCCGGAAGTTCAGGGAGAGTTC
ATCGCCAATCAGAGAGTGATCGCCGGGCACTTCCATTGGGGTTTCCAAGC
TTATGCGGCGGAACCGCATCTGCTCATCACGACACTTCGAAATCCCCTGG
AGGTCTACGTCTCCGGCGAGCAGTACCTCAATCGCGCAGCCACGGCAACC
CTCGAGGGTGCGACGGTGCACGTCACGAGCGCCATGCGCAAGTCGCTTAC
GCGCAGCCACCCACCGGGGTTCTTGCATCGATTTGTCGGACGCAGCGTGA
TCACGACCCAGGACGTGCGTCAGGCAACAGTGGAAGGCGCAGCAAACATG
AAAACCTTCTTCTTGGTTGGCGTGGTCGAGCAGTACGTCGGCTTTATTTC
CGTGTTGCGCGCCCTCATCGATCCCGAAGATAATCACGCGGGGATGTGGG
ACGAACACATCGAGAAACGGTTGAATGTATCGCCGGTGGAATCGGTAAAT
GTTCTGGCACAAGTCGACCCAGTGTTGGTGGAGAAGTTTAATTCCACCTT
GAGCTACCAGTGGTTAGTGTACGGCCACGCCGTTCGCCTGTACAAAGAGA
GGTGCCGAGAGGTTTTACCGGAATATTTACATATCAAGCACTGCAGCGTG
CCAAGCCCTCCCGACGCTTACGTAGCGTCAGTGCATATATAAGTTTCCAA
GCTTATGCGGCGGAACCGCATCTGCTCATCACGACACTTCGAAATCCCCT
GGAGGTCTACGTCTCCGGCGAGCAGTACCTCAATCGCGCAGCCACGGCAA
CCCTCGAGGGTGCGACGGTGCACGTCACGAGCGCCATGCGCAAGTCGCTT
ACGCGCAGCCACCCACCGGGGTTCTTGCATCGATTTGTCGGACGCAGCGT
GATCACGACCCAGGACGTGCGTCAGGCAACAGTGGAAGGCGCAGCAAACA
TGAAAACCTTCTTCTTGGTTGGCGTGGTCGAGCAGTACGTCGGCTTTATT
TCCGTGTTGCGCGCCCTCATCGATCCCGAAGATAATCACGCGGGGATGTG
GGACGAACACATCGAGAAACGGTTGAATGTATCGCCGGTGGAATCGGTAA
ATGTTCTGGCACAAGTCGACCCAGTGTTGGTGGAGAAGTTTAATTCCACC
TTGAGCTACCAGTGGTTAGTGTACGGCCACGCCGTTCGCCTGTACAAAGA
GAGGTGCCGAGAGGTTTTACCGGAATATTTACATATCAAGCACTGCAGCG
TGCCAAGCCCTCCCGACGCTTACGTAGCGTCAGTGCATATATAA
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