mRNA_H-elongata_contig53539.12707.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig53539.12707.1
Unique NamemRNA_H-elongata_contig53539.12707.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig53539.12707.1 vs. uniprot
Match: D8LBM5_ECTSI (Similar to 20S proteasome alpha5 subunit n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LBM5_ECTSI)

HSP 1 Score: 320 bits (819), Expect = 1.870e-100
Identity = 166/227 (73.13%), Postives = 192/227 (84.58%), Query Frame = 2
Query:    2 QIEYATQAAEKGGLAIGVQTDQGLVLAAQGRRRSPLLKRSSVCKINDID-ACITCAMSGLLPDGRMLVDCARTWVQEHRFEFDEAPSVEAVASYLSRLTLKFHGYDKDGKPGGGSKEDDDG--LAMARPVGVALLMAGVDRGNRPVLYHLDPTGAYVQWRAKAIGEKGVAAEAMLEKYGPYEKMTVRRAMMVVLQVIKEVL-EDEFSEERMELVCVDLSEGAPERGD 670
            Q+EYA +AA+KGGL IGVQTD+GLVLAA GRRRSPLLK SSV KI D+D   + CAMSGLLPDGR+L+D ARTWVQEHRFEFDEAPSVEAVAS LSRL LKF+GYDKDGK G G +E++DG   AM+RPVGVALLMAGVDRG+RPVLYHLDP+GAYVQWRA+AIG+KG AAEA LE  GP+E M+VRRAM  VL V++EVL +DEFS +R+E+VCVD+  G    GD
Sbjct:   51 QVEYAVEAADKGGLTIGVQTDKGLVLAAHGRRRSPLLKASSVSKIADVDDGRMCCAMSGLLPDGRLLLDYARTWVQEHRFEFDEAPSVEAVASQLSRLALKFNGYDKDGKAGNGGREEEDGGGPAMSRPVGVALLMAGVDRGDRPVLYHLDPSGAYVQWRARAIGDKGAAAEAKLEGVGPFEGMSVRRAMAAVLGVLREVLGDDEFSTDRLEMVCVDMMGGGRGSGD 277          
BLAST of mRNA_H-elongata_contig53539.12707.1 vs. uniprot
Match: UPI0002658A20 (proteasome subunit alpha type-5 n=1 Tax=Galendromus occidentalis TaxID=34638 RepID=UPI0002658A20)

HSP 1 Score: 163 bits (413), Expect = 5.020e-43
Identity = 87/213 (40.85%), Postives = 134/213 (62.91%), Query Frame = 2
Query:    2 QIEYATQAAEKGGLAIGVQTDQGLVLAAQGRRRSPLLKRSSVCKINDIDACITCAMSGLLPDGRMLVDCARTWVQEHRFEFDEAPSVEAVASYLSRLTLKFHGYDKDGKPGGGSKEDDDGLAMARPVGVALLMAGVDRGNRPVLYHLDPTGAYVQWRAKAIGEKGVAAE-AMLEKYGPYEKMTVRRAMMVVLQVIKEVLEDEFSEERMELVCV 637
            Q+EYA +A + G  AIG+QT +G VLA + R  SPL++ +++ KI +ID  I CA+SGL+ D R ++D AR   Q H F +DE+  VE+ A  +S L +KF               DDDG AM+RP GVA+L AG+D    P L+H+DP+G YV++ AKAIG     A+ A+ EKY  ++ MT++ A+  +L ++K+V+E++   + +E+  +
Sbjct:   23 QVEYAIEAIKLGSTAIGIQTSEGCVLAVEKRVTSPLMESTTIEKIVEIDKFIGCAVSGLMADSRTMIDKARVEAQNHWFNYDESMRVESCAQAVSNLAIKF------------GDNDDDGTAMSRPFGVAILFAGIDEKKGPQLFHMDPSGTYVEFLAKAIGSGCEGAQQALQEKY--HKSMTLKEALKEILVILKQVMEEKLGVDNVEVATI 221          
BLAST of mRNA_H-elongata_contig53539.12707.1 vs. uniprot
Match: E9HGR7_DAPPU (Proteasome subunit alpha type n=8 Tax=Mandibulata TaxID=197563 RepID=E9HGR7_DAPPU)

HSP 1 Score: 162 bits (411), Expect = 9.720e-43
Identity = 92/213 (43.19%), Postives = 133/213 (62.44%), Query Frame = 2
Query:    2 QIEYATQAAEKGGLAIGVQTDQGLVLAAQGRRRSPLLKRSSVCKINDIDACITCAMSGLLPDGRMLVDCARTWVQEHRFEFDEAPSVEAVASYLSRLTLKFHGYDKDGKPGGGSKEDDDGLAMARPVGVALLMAGVDRGNRPVLYHLDPTGAYVQWRAKAIGEKGVAAEAMLEKYGPYEK-MTVRRAMMVVLQVIKEVLEDEFSEERMELVCV 637
            Q+EYA +A + G  AIG+QT +G+VLA + R  SPL++ +++ KI +ID  I CA+SGL+ D R +VD AR   Q H F +DE  SVE+VA  +S L ++F               DDDG AM+RP GVA+L AG+D    P L+H+DP+G YVQ+ AKAIG     A+  L++   Y K MT++ AM   L ++K+V+E++ S   +E+  V
Sbjct:   23 QVEYAIEAIKLGSTAIGIQTSEGVVLAVEKRITSPLMEPTTIEKIVEIDKHIGCAVSGLMADSRTMVDRARVEAQNHWFTYDEKMSVESVAQAVSNLAIQF------------GDSDDDGNAMSRPFGVAILFAGIDEKG-PQLFHMDPSGTYVQYDAKAIGSGSEGAQQSLQE--AYNKSMTLKSAMKAALTILKQVMEEKLSSTNVEVAAV 220          
BLAST of mRNA_H-elongata_contig53539.12707.1 vs. uniprot
Match: A0A1V9XHX5_9ACAR (Proteasome subunit alpha type n=2 Tax=Dermanyssoidea TaxID=41438 RepID=A0A1V9XHX5_9ACAR)

HSP 1 Score: 161 bits (408), Expect = 1.030e-41
Identity = 89/218 (40.83%), Postives = 136/218 (62.39%), Query Frame = 2
Query:    2 QIEYATQAAEKGGLAIGVQTDQGLVLAAQGRRRSPLLKRSSVCKINDIDACITCAMSGLLPDGRMLVDCARTWVQEHRFEFDEAPSVEAVASYLSRLTLKFHGYDKDGKPGGGSKEDDDGLAMARPVGVALLMAGVDRGNRPVLYHLDPTGAYVQWRAKAIGEKGVAAE-AMLEKYGPYEKMTVRRAMMVVLQVIKEVLEDEFSEERMELVCVDLSEG 652
            Q+EYA +A + G  AIG+QT +G VLA + R  SPL++ +++ KI +ID  I CA+SGL+ D R L+D AR   Q H F ++E   VE+ A  +S L +KF           G  ++DDG AM+RP GVA+L AG+D    P L+H+DP+G YV++ AKAIG     A+ A+ EKY  ++ +T++ A+   L ++K+V+E++ S   +E+  V   +G
Sbjct:   72 QVEYAIEAIKLGSTAIGIQTSEGCVLAVEKRVTSPLMEGTTIEKIVEIDNHIGCAVSGLMADSRTLIDRARVEAQNHWFLYNEKMHVESCAQAVSNLAIKF-----------GDSDNDDGAAMSRPFGVAILFAGIDSNRGPQLFHMDPSGTYVEFLAKAIGSGSEGAQQALQEKY--HKSLTLKEALKETLVILKQVMEEKLSSINVEVATVTKEKG 276          
BLAST of mRNA_H-elongata_contig53539.12707.1 vs. uniprot
Match: A0A1D1XX99_9ARAE (Proteasome subunit alpha type (Fragment) n=1 Tax=Anthurium amnicola TaxID=1678845 RepID=A0A1D1XX99_9ARAE)

HSP 1 Score: 159 bits (403), Expect = 1.560e-41
Identity = 98/223 (43.95%), Postives = 137/223 (61.43%), Query Frame = 2
Query:    2 QIEYATQAAEKGGLAIGVQTDQGLVLAAQGRRRSPLLKRSSVCKINDIDACITCAMSGLLPDGRMLVDCARTWVQEHRFEFDEAPSVEAVASYLSRLTLKFHGYDKDGKPGGGSKEDDDGLAMARPVGVALLMAGVDRGNRPVLYHLDPTGAYVQWRAKAIGEKGVAAEAMLEKYGPYEK-MTVRRAMMVVLQVIKEVLEDEFSEERMELVCVDLSEGAPERG 667
            Q+EYA +A + G  A+G+QT +G+VLAA+ R  SPLL  SS+ KI +ID  + CAMSGL  D R ++D AR   Q HRF +DEA  VE+V   +  L L+F          G S E ++ + M+RP GVALL+AGVD  N P L+H DP+G + Q+ AKAIG     A+  LE  G Y K +T+ +A  + L+V+K+V+E++ +   +EL  V      PERG
Sbjct:   28 QVEYAIEAIKLGSTAVGIQTSEGVVLAAEKRVTSPLLVSSSIEKIMEIDKHLGCAMSGLTADSRTMIDHARVAAQSHRFTYDEAIKVESVTQAVCDLALRF----------GESAEGEESI-MSRPFGVALLIAGVDE-NGPQLFHADPSGTFTQFDAKAIGSGSEGAQTELE--GEYHKSITLEKAETLSLRVLKQVMEEKLNNTNVELASV-----TPERG 231          
BLAST of mRNA_H-elongata_contig53539.12707.1 vs. uniprot
Match: A0A7J7JUL7_BUGNE (Proteasome subunit alpha type n=1 Tax=Bugula neritina TaxID=10212 RepID=A0A7J7JUL7_BUGNE)

HSP 1 Score: 158 bits (399), Expect = 4.910e-41
Identity = 89/217 (41.01%), Postives = 136/217 (62.67%), Query Frame = 2
Query:    2 QIEYATQAAEKGGLAIGVQTDQGLVLAAQGRRRSPLLKRSSVCKINDIDACITCAMSGLLPDGRMLVDCARTWVQEHRFEFDEAPSVEAVASYLSRLTLKFHGYDKDGKPGGGSKEDDDGLAMARPVGVALLMAGVDRGNRPVLYHLDPTGAYVQWRAKAIGEKGVAAEAMLEKYGPYEKMTVRRAMMVVLQVIKEVLEDEFSEERMELVCVDLSEG 652
            Q+EYA +A + G  AIG+QT +G+VLA + R  SPL++  S+ KI ++D+ + CAMSGL+ D R L+D AR   Q H F +DE  SVE+V   +S L L F   D D +PG          AM+RP GVALL AG+D  N P L+HLDP+G ++++ AKAIG     A+  L+    ++ M +  A+  V++++K+V+E++ + + +EL  V  ++G
Sbjct:   23 QVEYAIEAIKLGSTAIGLQTSEGVVLAVEKRVTSPLIEADSIEKIFEVDSHLGCAMSGLIADSRTLIDRARVEAQNHWFTYDEKMSVESVTQSVSNLALAFG--DDDAEPG----------AMSRPFGVALLFAGIDE-NGPQLFHLDPSGTFIRYDAKAIGSASEGAQQSLQDVF-HKSMNLETAIKEVMKILKQVMEEKLTSKNVELAIVTKADG 225          
BLAST of mRNA_H-elongata_contig53539.12707.1 vs. uniprot
Match: UPI0006B071AC (proteasome subunit alpha type-5-like n=2 Tax=Limulus polyphemus TaxID=6850 RepID=UPI0006B071AC)

HSP 1 Score: 157 bits (398), Expect = 6.810e-41
Identity = 88/218 (40.37%), Postives = 135/218 (61.93%), Query Frame = 2
Query:    2 QIEYATQAAEKGGLAIGVQTDQGLVLAAQGRRRSPLLKRSSVCKINDIDACITCAMSGLLPDGRMLVDCARTWVQEHRFEFDEAPSVEAVASYLSRLTLKFHGYDKDGKPGGGSKEDDDGLAMARPVGVALLMAGVDRGNRPVLYHLDPTGAYVQWRAKAIGEKGVAAE-AMLEKYGPYEKMTVRRAMMVVLQVIKEVLEDEFSEERMELVCVDLSEG 652
            Q+EYA +A + G  AIG+QT +G++LA + R  S L++ +++ KI +ID  I CA+SGL+ D R +VD AR   Q H F ++E   VE+VA  +S L ++F               DDDG+AM+RP GVA+L AG+D    P LYH+DP+G YVQ+ AKAIG     A+ A+ E+Y  ++ MT+  A    L+++K+V+E++ +   +E+  V   +G
Sbjct:   23 QVEYAIEAIKLGSTAIGIQTSEGVMLAVEKRVTSTLMESTTIEKIVEIDTHIGCAVSGLMADSRTMVDKARVEAQNHWFLYNEKMQVESVAQAVSNLAIRF------------GDSDDDGIAMSRPFGVAILFAGIDERG-PQLYHMDPSGTYVQYDAKAIGSGSEGAQQALQEEY--HKSMTLEEASKTALKILKQVMEEKLNSTNIEVAAVTPDKG 225          
BLAST of mRNA_H-elongata_contig53539.12707.1 vs. uniprot
Match: A0A1X6NLH8_PORUM (Proteasome subunit alpha type n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NLH8_PORUM)

HSP 1 Score: 157 bits (398), Expect = 7.630e-41
Identity = 94/217 (43.32%), Postives = 127/217 (58.53%), Query Frame = 2
Query:    2 QIEYATQAAEKGGLAIGVQTDQGLVLAAQGRRRSPLLKRSSVCKINDIDACITCAMSGLLPDGRMLVDCARTWVQEHRFEFDEAPSVEAVASYLSRLTLKFHGYDKDGKPGGGSKEDDDGLAMARPVGVALLMAGVDRGNRPVLYHLDPTGAYVQWRAKAIGEKGVAAEAMLEKYGPYEKMTVRRAMMVVLQVIKEVLEDEFSEERMELVCVDLSEG 652
            Q+EYA +A + G  A+G+ T +G++LA + R  SPLL  SS+ K+ +ID  I  AMSGL  D R L+D  R   QEHRF +DE  SVE+    L  L L+F    +DG+       DD   AMARP GVALL+AGVD    P LYH DP+G YV+W AKAIG     A+  L++      MT+  A  + L+ +K V+E++ S E +E+  V    G
Sbjct:   23 QVEYAIEAIKLGSTAVGICTTEGVILAVEKRLTSPLLTPSSIEKVLEIDTHIGAAMSGLTADARTLIDHGRIVTQEHRFTYDEPLSVESTTQSLCDLALRF---GEDGR-------DDGADAMARPFGVALLIAGVDDEGGPALYHTDPSGTYVKWMAKAIGAGSEGAQTALQEAWS-AGMTLAEAEGLALKTLKAVMEEKVSGENVEVAAVTAESG 228          
BLAST of mRNA_H-elongata_contig53539.12707.1 vs. uniprot
Match: A0A5J4Z0C5_PORPP (Proteasome subunit alpha type n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z0C5_PORPP)

HSP 1 Score: 157 bits (397), Expect = 1.180e-40
Identity = 97/240 (40.42%), Postives = 144/240 (60.00%), Query Frame = 2
Query:    2 QIEYATQAAEKGGLAIGVQTDQGLVLAAQGRRRSPLLKRSSVCKINDIDACITCAMSGLLPDGRMLVDCARTWVQEHRFEFDEAPSVEAVASYLSRLTLKFHGYDKDGKPGGGSKEDDDGLAMARPVGVALLMAGVDRGNRPVLYHLDPTGAYVQWRAKAIGEKGVAAEAMLEKYGPYEK-MTVRRAMMVVLQVIKEVLEDEFSEERMELVCVDLSEGAPERGDIDSLSMEDIRCNFQRL 718
            Q+EYA +A + G  AIG++T+QG+VLA + R  SPLL+  SV K+  ID+ I CAMSGL  D R L+D AR   Q HRF +DE   +++ A  +  L L+F    +DGK      E+D   AM+RP GVALL+AG+D G +P L H DP+G YV+W AKAIG     A+  L++   + K +T++ A ++ L+ +K+V+E     E++    V++     E G+    S E++    +RL
Sbjct:   29 QVEYAIEAIKLGSTAIGIKTEQGVVLAVEKRLTSPLLEPRSVEKLVVIDSQIGCAMSGLTADARTLIDHARVETQSHRFTYDEPMQIDSCAQAICDLALQF---GEDGK------EED---AMSRPFGVALLIAGIDVGGKPSLIHTDPSGTYVKWDAKAIGAGSEGAQTALQE--AFSKTLTLQEAEVLALRTLKQVME-----EKLNKTNVEIGAALVETGEFRVYSSEELEACIERL 249          
BLAST of mRNA_H-elongata_contig53539.12707.1 vs. uniprot
Match: A0A6P7VHU3_IXOSC (Proteasome subunit alpha type n=20 Tax=Ixodoidea TaxID=297308 RepID=A0A6P7VHU3_IXOSC)

HSP 1 Score: 157 bits (396), Expect = 1.310e-40
Identity = 91/218 (41.74%), Postives = 135/218 (61.93%), Query Frame = 2
Query:    2 QIEYATQAAEKGGLAIGVQTDQGLVLAAQGRRRSPLLKRSSVCKINDIDACITCAMSGLLPDGRMLVDCARTWVQEHRFEFDEAPSVEAVASYLSRLTLKFHGYDKDGKPGGGSKEDDDGLAMARPVGVALLMAGVDRGNRPVLYHLDPTGAYVQWRAKAIGEKGVAAE-AMLEKYGPYEKMTVRRAMMVVLQVIKEVLEDEFSEERMELVCVDLSEG 652
            Q+EYA +A + G  AIG+QT +G+VLA + R  SPL++ +++ KI +ID  I CA+SGL+ D R +VD AR   Q H F ++E   VE+VA  +S L ++F               DDDG AM+RP GVA+L AG+D    P LYH+DP+G YVQ+ AKAIG     A+ A+ EKY  ++ MT++ A    L ++K+V+E++ +   +E+  V   +G
Sbjct:   23 QVEYAIEAIKLGSTAIGIQTAEGVVLAVEKRVTSPLMEPTTIEKIVEIDNHIGCAVSGLMADSRTMVDRARVEAQNHWFLYNEKMQVESVAQAVSNLAIQF------------GDSDDDGNAMSRPFGVAILFAGIDPKG-PQLYHMDPSGTYVQYDAKAIGSGSEGAQQALQEKY--HKSMTLKEATQDALTILKQVMEEKLNSTNVEVANVTKEKG 225          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig53539.12707.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LBM5_ECTSI1.870e-10073.13Similar to 20S proteasome alpha5 subunit n=2 Tax=E... [more]
UPI0002658A205.020e-4340.85proteasome subunit alpha type-5 n=1 Tax=Galendromu... [more]
E9HGR7_DAPPU9.720e-4343.19Proteasome subunit alpha type n=8 Tax=Mandibulata ... [more]
A0A1V9XHX5_9ACAR1.030e-4140.83Proteasome subunit alpha type n=2 Tax=Dermanyssoid... [more]
A0A1D1XX99_9ARAE1.560e-4143.95Proteasome subunit alpha type (Fragment) n=1 Tax=A... [more]
A0A7J7JUL7_BUGNE4.910e-4141.01Proteasome subunit alpha type n=1 Tax=Bugula nerit... [more]
UPI0006B071AC6.810e-4140.37proteasome subunit alpha type-5-like n=2 Tax=Limul... [more]
A0A1X6NLH8_PORUM7.630e-4143.32Proteasome subunit alpha type n=1 Tax=Porphyra umb... [more]
A0A5J4Z0C5_PORPP1.180e-4040.42Proteasome subunit alpha type n=1 Tax=Porphyridium... [more]
A0A6P7VHU3_IXOSC1.310e-4041.74Proteasome subunit alpha type n=20 Tax=Ixodoidea T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig53539contigH-elongata_contig53539:488..3314 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score247.7
Seed ortholog evalue6e-63
Seed eggNOG ortholog2880.D8LBM5
Preferred namePSMA5
KEGG koko:K02729,ko:K12388
KEGG TC9.A.63.1.3
KEGG Pathwayko03050,ko04142,ko04722,ko04979,map03050,map04142,map04722,map04979
KEGG ModuleM00337,M00340
GOsGO:0000502,GO:0001775,GO:0002252,GO:0002263,GO:0002274,GO:0002275,GO:0002283,GO:0002366,GO:0002376,GO:0002443,GO:0002444,GO:0002446,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0005839,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0006810,GO:0006887,GO:0006955,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009987,GO:0010498,GO:0010499,GO:0012505,GO:0016020,GO:0016192,GO:0016579,GO:0019538,GO:0019773,GO:0019941,GO:0030141,GO:0030163,GO:0031410,GO:0031597,GO:0031974,GO:0031981,GO:0031982,GO:0031983,GO:0032940,GO:0032991,GO:0034515,GO:0034774,GO:0036211,GO:0036230,GO:0042119,GO:0042175,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043299,GO:0043312,GO:0043412,GO:0043632,GO:0043687,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044433,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0045055,GO:0045321,GO:0046903,GO:0050896,GO:0051179,GO:0051234,GO:0051603,GO:0060205,GO:0070013,GO:0070646,GO:0070647,GO:0071704,GO:0097708,GO:0099503,GO:0101002,GO:1901564,GO:1901565,GO:1901575,GO:1902494,GO:1904813,GO:1905368,GO:1905369
EggNOG free text desc.threonine-type endopeptidase activity
EggNOG OGsCOG0638@1,KOG0176@2759
EC3.4.25.1
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01002,ko02000,ko03051
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionNucleophile aminohydrolases, N-terminal
Ec32 orthologEc-27_003410.1
Exons3
Model size1714
Cds size768
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig53539.12707.1prot_H-elongata_contig53539.12707.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig53539 654..2534 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930873.1562827-UTR-H-elongata_contig53539:487..6531622930873.1562827-UTR-H-elongata_contig53539:487..653Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig53539 488..653 +
1691679606.4581265-UTR-H-elongata_contig53539:487..6531691679606.4581265-UTR-H-elongata_contig53539:487..653Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig53539 488..653 +
1622930873.4209917-UTR-H-elongata_contig53539:2534..33141622930873.4209917-UTR-H-elongata_contig53539:2534..3314Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig53539 2535..3314 +
1691679606.5024745-UTR-H-elongata_contig53539:2534..33141691679606.5024745-UTR-H-elongata_contig53539:2534..3314Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig53539 2535..3314 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930873.174142-CDS-H-elongata_contig53539:653..7001622930873.174142-CDS-H-elongata_contig53539:653..700Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53539 654..700 +
1691679606.4707227-CDS-H-elongata_contig53539:653..7001691679606.4707227-CDS-H-elongata_contig53539:653..700Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53539 654..700 +
1622930873.3874369-CDS-H-elongata_contig53539:1124..13631622930873.3874369-CDS-H-elongata_contig53539:1124..1363Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53539 1125..1363 +
1691679606.4804-CDS-H-elongata_contig53539:1124..13631691679606.4804-CDS-H-elongata_contig53539:1124..1363Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53539 1125..1363 +
1622930873.4046073-CDS-H-elongata_contig53539:2052..25341622930873.4046073-CDS-H-elongata_contig53539:2052..2534Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53539 2053..2534 +
1691679606.4895475-CDS-H-elongata_contig53539:2052..25341691679606.4895475-CDS-H-elongata_contig53539:2052..2534Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53539 2053..2534 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig53539.12707.1

>prot_H-elongata_contig53539.12707.1 ID=prot_H-elongata_contig53539.12707.1|Name=mRNA_H-elongata_contig53539.12707.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=256bp
MSGLLPDGRMLVDCARTWVQEHRFEFDEAPSVEAVASYLSRLTLKFHGYD
KDGKPGGGSKEDDDGLAMARPVGVALLMAGVDRGNRPVLYHLDPTGAYVQ
WRAKAIGEKGVAAEAMLEKYGPYEKMTVRRAMMVVLQVIKEVLEDEFSEE
RMELVCVDLSEGAPERGDIDSLSMEDIRCNFQRLEETQSVRALDNIVGAI
GVRDIRRAVGEVESQGGENDPIFIPARRWPSFRRVPRSELEALLHEGATS
DRTID*
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mRNA from alignment at H-elongata_contig53539:488..3314+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig53539.12707.1 ID=mRNA_H-elongata_contig53539.12707.1|Name=mRNA_H-elongata_contig53539.12707.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2827bp|location=Sequence derived from alignment at H-elongata_contig53539:488..3314+ (Himanthalia elongata Himel1 dioecious)
TCAGATCGAATACGCCACTCAAGCCGCAGAGAAGGGGGGTCTGGCGATCG GCGTGCAGACGGACCAGGGACTGGTGCTAGCCGCGCAGGGTCGACGACGC TCACCTTTGCTCAAGAGATCTTCGGTGTGCAAGATCAACGACATCGATGC TTGCATAACCTGCGCCATGTCCGGATTGCTCCCGGACGGCCGTATGTTGG TCGACTGCGCGCGGTGAGTCCGTAGGCAGGCAATCATAATGCTGACGGAA ATAATCAGGAGGTAAGCGGCAATTCAGTCTCGTCGGCGTGGAATTGGCCA TTCAAAGCGTGAGCGTACGATACACACGATGACACGTACGTACATGTAGG AGATCGAAACTGAATCGGTCACATGTTAGAATAAACTCGCTGTTGATTAT GCTGCTGCTGCTGCTGCTGCTGCTGCTGATAAATCGGTGGGGACGGTTAG GAATCGAACACGGCGCAAATTTGAGCCCCTACTTTTTGAAGTATGCTTGT TCGCCTGTCCTGACGCTGTGGCACGGTATAAATAACTCAATTATAATTCC ACCCGTTTCACCAAGACACGTATCGCGGCCCGGACAGTGTTCTTCCGCAC CACGTAACAACGAAACAACGCGTGAAATATTGATCAGCACGTGGGTCCAA GAGCACCGTTTCGAGTTCGACGAGGCTCCAAGCGTGGAGGCGGTGGCGTC GTACCTGAGTCGACTGACTCTCAAGTTTCACGGTTACGACAAGGACGGGA AGCCGGGCGGCGGCAGCAAGGAAGATGACGATGGTCTAGCGATGGCGAGG CCGGTAGGCGTCGCTTTGCTCATGGCGGGGGTCGACCGCGGTAACCGCCC GGTGCTTTATCACCTCGATCCAACAGGTGAAGACAAAAACCTTATACTGA AATACCACTAGACAACACAACACGACAAGACACGACACGACACAAGACGT TACACTGCATGGGGGAGGGTTGGTGACCGCTGCCGGCGTGTTGTGTTGAT TTGGCCCCCATCTACAGGAAGTCAGAACACCAAGAAGAAACGGAATCAAG CTTCCTTGTGGTACAAGAGAGTGAATCGATGTAATACCGTACGATAGAAG GTCGCAAAAACACCGAACAGCTCTTCCACGCGGAAAAACTTGCTGAAAGG GTGTACCGACAGACAAGCTTAGTAATAGTATTTCCTCCCTGTGACATCGA GCCACCGAGAGGGAGGAAAAGCAATGTTTCCACCATACAGGAGTGTTAGT TAATCCTTGATCAGAGTGTTTGTTCATCGTTGATCCTTAATCCTTGATCG TGGACACCAAATAAGAGTTTTGGGCGTCAATTCGTTTTATCATTTCGGGC CGGGTCGGGCCTTGGACTAACAGTCGCGAAGAATTGCTGCTTCTTGTATT TGTGTTTTAACCCTTTTGGAACTGGATTTCAAGTTTTATATTGAATTTAG TGTTTAAAAACCAGATCGAGGTTCTATAGGGTTAACCGTGCAATCAGATA TTCGGCCTATGCTGATCAACCCCCATGTGCTGCCTGTATCGATCAACCAA CGCGTTCGCTCTCAGGAGCGTACGTGCAGTGGCGAGCTAAGGCGATCGGA GAAAAGGGTGTCGCCGCAGAAGCCATGCTGGAAAAATACGGGCCGTACGA AAAAATGACCGTACGACGCGCTATGATGGTCGTGCTGCAAGTGATCAAAG AAGTGTTGGAGGATGAGTTTTCTGAGGAGAGGATGGAATTGGTCTGCGTG GATTTGAGTGAGGGTGCTCCAGAGCGCGGGGATATCGATTCCCTGTCAAT GGAGGACATACGGTGCAACTTTCAGCGTCTCGAGGAGACACAAAGTGTAA GAGCGTTAGATAATATCGTTGGCGCAATCGGCGTTCGAGATATAAGGAGG GCTGTAGGAGAGGTCGAGAGTCAGGGCGGGGAAAATGATCCCATATTCAT ACCCGCGAGGCGTTGGCCCTCGTTTCGAAGAGTTCCAAGAAGTGAATTGG AGGCGTTGCTTCATGAGGGTGCAACCAGCGACCGAACGATTGATTGAGCT AACTTACTTTCGGAAGAAAGTGACCAGATACTTGTACTGTTGGTGTGTTT TTATTTTTACTCAGGGGGCTGCTACTCATCATGTGAGCCTCGAAATCGCC GCGAAATGTTCTCCGGCTCCCTCGGAGACATTTTTGTCTGCCTTCGTTCT CTTTACTGCGCTGGGTGGGGTCGAAAACGTGCACATCCCGTATATCGTAC ATAGATTGCCCCTGTCTGGGATGATTAGTTTGGCTTTTGAGCATCACCTT GAGAGCAAGAAATAACTATAGCTTCTGTATAACAACATAGAGTACAAATA TTTTATTCGTGTTTTACCTTTCTCTATAAGTATGTATGTATGTATGTATG TATGGTCATGACATTTAGCAGAGTAAGATCAACCGGATTTGGTTGCCTTC AGCTCGTGGTCAGCTGGGCAGGGAAAACTATTTTTCCCTTGTCCCCGTTC GCGCCTGAGAATTTGGTCTCGCGAGACTGGTTCAGCAGTAATCCCGTCCC GCGTCAGCCTGTTCTCTCAACCTCTCAACCCAGGCTGAGTCTGGTACAAA AAAGTATCGTAAATACACTTGTTTGTACTGTTTCTTCCCCTTTTTCTGTC TCATGTCATCATATCTATACTGTAGCTTGTATTGCGGAGCTAGTTCTAGC GAAGATGAAAATTTGTAATATTTTCGAATTATGTTTTACGTTCGAAGGGT TCTAATGAAGTTCATACGTACTGTAGTATTTTTTTTTAATAACAAAACAG ACGGTAGGACCGTTTCACGCGGAGAGG
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Coding sequence (CDS) from alignment at H-elongata_contig53539:488..3314+

>mRNA_H-elongata_contig53539.12707.1 ID=mRNA_H-elongata_contig53539.12707.1|Name=mRNA_H-elongata_contig53539.12707.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1536bp|location=Sequence derived from alignment at H-elongata_contig53539:488..3314+ (Himanthalia elongata Himel1 dioecious)
ATGTCCGGATTGCTCCCGGACGGCCGTATGTTGGTCGACTGCGCGCGATG
TCCGGATTGCTCCCGGACGGCCGTATGTTGGTCGACTGCGCGCGCACGTG
GGTCCAAGAGCACCGTTTCGAGTTCGACGAGGCTCCAAGCGTGGAGGCGG
TGGCGTCGTACCTGAGTCGACTGACTCTCAAGTTTCACGGTTACGACAAG
GACGGGAAGCCGGGCGGCGGCAGCAAGGAAGATGACGATGGTCTAGCGAT
GGCGAGGCCGGTAGGCGTCGCTTTGCTCATGGCGGGGGTCGACCGCGGTA
ACCGCCCGGTGCTTTATCACCTCGATCCAACAGCACGTGGGTCCAAGAGC
ACCGTTTCGAGTTCGACGAGGCTCCAAGCGTGGAGGCGGTGGCGTCGTAC
CTGAGTCGACTGACTCTCAAGTTTCACGGTTACGACAAGGACGGGAAGCC
GGGCGGCGGCAGCAAGGAAGATGACGATGGTCTAGCGATGGCGAGGCCGG
TAGGCGTCGCTTTGCTCATGGCGGGGGTCGACCGCGGTAACCGCCCGGTG
CTTTATCACCTCGATCCAACAGGAGCGTACGTGCAGTGGCGAGCTAAGGC
GATCGGAGAAAAGGGTGTCGCCGCAGAAGCCATGCTGGAAAAATACGGGC
CGTACGAAAAAATGACCGTACGACGCGCTATGATGGTCGTGCTGCAAGTG
ATCAAAGAAGTGTTGGAGGATGAGTTTTCTGAGGAGAGGATGGAATTGGT
CTGCGTGGATTTGAGTGAGGGTGCTCCAGAGCGCGGGGATATCGATTCCC
TGTCAATGGAGGACATACGGTGCAACTTTCAGCGTCTCGAGGAGACACAA
AGTGTAAGAGCGTTAGATAATATCGTTGGCGCAATCGGCGTTCGAGATAT
AAGGAGGGCTGTAGGAGAGGTCGAGAGTCAGGGCGGGGAAAATGATCCCA
TATTCATACCCGCGAGGCGTTGGCCCTCGTTTCGAAGAGTTCCAAGAAGT
GAATTGGAGGCGTTGCTTCATGAGGGTGCAACCAGCGACCGAACGATTGA
TTGAGAGCGTACGTGCAGTGGCGAGCTAAGGCGATCGGAGAAAAGGGTGT
CGCCGCAGAAGCCATGCTGGAAAAATACGGGCCGTACGAAAAAATGACCG
TACGACGCGCTATGATGGTCGTGCTGCAAGTGATCAAAGAAGTGTTGGAG
GATGAGTTTTCTGAGGAGAGGATGGAATTGGTCTGCGTGGATTTGAGTGA
GGGTGCTCCAGAGCGCGGGGATATCGATTCCCTGTCAATGGAGGACATAC
GGTGCAACTTTCAGCGTCTCGAGGAGACACAAAGTGTAAGAGCGTTAGAT
AATATCGTTGGCGCAATCGGCGTTCGAGATATAAGGAGGGCTGTAGGAGA
GGTCGAGAGTCAGGGCGGGGAAAATGATCCCATATTCATACCCGCGAGGC
GTTGGCCCTCGTTTCGAAGAGTTCCAAGAAGTGAATTGGAGGCGTTGCTT
CATGAGGGTGCAACCAGCGACCGAACGATTGATTGA
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