mRNA_H-elongata_contig53442.12687.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig53442.12687.1
Unique NamemRNA_H-elongata_contig53442.12687.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig53442.12687.1 vs. uniprot
Match: D7G1I0_ECTSI (RNA helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1I0_ECTSI)

HSP 1 Score: 337 bits (863), Expect = 2.570e-109
Identity = 173/181 (95.58%), Postives = 174/181 (96.13%), Query Frame = 1 
Query:    4 EGDLDVYPLYSSLPPQAQQKIFREAPGPKFPGGPPGRKAVVSTNVAETSLTIDGIVYVVDPGFSKQKARNVYNPRIRVESLLVSPISRASAQQRSGRAGRTRPGKCFRLYTEQSFKEELLEQTYPEILRSKMSNTVLTLLKLGVEDLVHFDFMDPPAPETLMRALELLNYLGALDDEGSLT 546
            EG+L VYPLYSSLPP AQQKIFREAPGPKFPGGP GRK VVSTNVAETSLTIDGIVYVVDPGFSKQK   VYNPRIRVESLLVSPISRASAQQRSGRAGRTRPGKCFRLYTEQSFKEELLEQTYPEILRSKMSNTVLTLLKLGVEDLVHFDFMDPPAPETLMRALELLNYLGALDDEGSLT
Sbjct:  295 EGELAVYPLYSSLPPAAQQKIFREAPGPKFPGGPVGRKVVVSTNVAETSLTIDGIVYVVDPGFSKQK---VYNPRIRVESLLVSPISRASAQQRSGRAGRTRPGKCFRLYTEQSFKEELLEQTYPEILRSKMSNTVLTLLKLGVEDLVHFDFMDPPAPETLMRALELLNYLGALDDEGSLT 472
[Close]
BLAST of mRNA_H-elongata_contig53442.12687.1 vs. uniprot
Match: A0A836CBU4_9STRA (RNA helicase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBU4_9STRA)

HSP 1 Score: 322 bits (826), Expect = 9.010e-104
Identity = 163/180 (90.56%), Postives = 171/180 (95.00%), Query Frame = 1 
Query:    7 GDLDVYPLYSSLPPQAQQKIFREAPGPKFPGGPPGRKAVVSTNVAETSLTIDGIVYVVDPGFSKQKARNVYNPRIRVESLLVSPISRASAQQRSGRAGRTRPGKCFRLYTEQSFKEELLEQTYPEILRSKMSNTVLTLLKLGVEDLVHFDFMDPPAPETLMRALELLNYLGALDDEGSLT 546
            G++ VYPLYSSL PQAQQKIFR+APGPK+PGGPPGRK VVSTN+AETSLTIDGIVYVVDPGFSKQK   VYNPRIRVESLLVSPISRASA+QRSGRAGRTRPGKCFRLYTE+SF+EELLEQTYPEILRSKMS  VLTLLKLGVEDLVHFDFMDPPAPETLMRALELLNYLGALDDEG LT
Sbjct:  298 GEVMVYPLYSSLAPQAQQKIFRDAPGPKYPGGPPGRKVVVSTNIAETSLTIDGIVYVVDPGFSKQK---VYNPRIRVESLLVSPISRASAKQRSGRAGRTRPGKCFRLYTERSFQEELLEQTYPEILRSKMSTVVLTLLKLGVEDLVHFDFMDPPAPETLMRALELLNYLGALDDEGCLT 474
[Close]
BLAST of mRNA_H-elongata_contig53442.12687.1 vs. uniprot
Match: A0A7S2UZ15_9STRA (RNA helicase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UZ15_9STRA)

HSP 1 Score: 313 bits (803), Expect = 2.840e-100
Identity = 156/181 (86.19%), Postives = 169/181 (93.37%), Query Frame = 1 
Query:    4 EGDLDVYPLYSSLPPQAQQKIFREAPGPKFPGGPPGRKAVVSTNVAETSLTIDGIVYVVDPGFSKQKARNVYNPRIRVESLLVSPISRASAQQRSGRAGRTRPGKCFRLYTEQSFKEELLEQTYPEILRSKMSNTVLTLLKLGVEDLVHFDFMDPPAPETLMRALELLNYLGALDDEGSLT 546
            EG++ V+PLYSSLPP+ QQ IF+ APGP+FPGGPPGRK VVSTN+AETSLTIDG+VYVVDPGFSKQK   VYNPRIRVESLLVSPIS+ASA QRSGRAGRTRPGKCFRLYTE+SF +EL EQTYPEILRSKMSN VLTLLKLGVEDLVHFDFMDPPAPETLMRALELLNYLGALDD+G+LT
Sbjct:  308 EGEMVVFPLYSSLPPKQQQLIFQSAPGPRFPGGPPGRKVVVSTNIAETSLTIDGVVYVVDPGFSKQK---VYNPRIRVESLLVSPISKASANQRSGRAGRTRPGKCFRLYTEKSFHQELQEQTYPEILRSKMSNVVLTLLKLGVEDLVHFDFMDPPAPETLMRALELLNYLGALDDDGNLT 485
[Close]
BLAST of mRNA_H-elongata_contig53442.12687.1 vs. uniprot
Match: A0A7S2YLB6_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2YLB6_9STRA)

HSP 1 Score: 303 bits (776), Expect = 3.460e-98
Identity = 153/178 (85.96%), Postives = 164/178 (92.13%), Query Frame = 1 
Query:   13 LDVYPLYSSLPPQAQQKIFREAPGPKFPGGPPGRKAVVSTNVAETSLTIDGIVYVVDPGFSKQKARNVYNPRIRVESLLVSPISRASAQQRSGRAGRTRPGKCFRLYTEQSFKEELLEQTYPEILRSKMSNTVLTLLKLGVEDLVHFDFMDPPAPETLMRALELLNYLGALDDEGSLT 546
            L VYPLYSSLPPQAQ++IF  APGP+ PGGPPGRK V+STNVAETSLTIDGIVYVVDPGFSKQK   VYNPRIRVESLLVSPISRASA+QRSGRAGRTRPGKCFRLYTE+SF E+L E TYPEILRSKMS+ VLTL KLG++DLVHFDF+DPPAPETLMRALELLNYLGALDDEG LT
Sbjct:  127 LVVYPLYSSLPPQAQRRIFDAAPGPRVPGGPPGRKVVISTNVAETSLTIDGIVYVVDPGFSKQK---VYNPRIRVESLLVSPISRASARQRSGRAGRTRPGKCFRLYTEKSFHEDLQEATYPEILRSKMSSVVLTLKKLGIDDLVHFDFLDPPAPETLMRALELLNYLGALDDEGELT 301
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BLAST of mRNA_H-elongata_contig53442.12687.1 vs. uniprot
Match: A0A7S2HR77_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2HR77_9STRA)

HSP 1 Score: 304 bits (778), Expect = 4.220e-97
Identity = 153/180 (85.00%), Postives = 163/180 (90.56%), Query Frame = 1 
Query:    7 GDLDVYPLYSSLPPQAQQKIFREAPGPKFPGGPPGRKAVVSTNVAETSLTIDGIVYVVDPGFSKQKARNVYNPRIRVESLLVSPISRASAQQRSGRAGRTRPGKCFRLYTEQSFKEELLEQTYPEILRSKMSNTVLTLLKLGVEDLVHFDFMDPPAPETLMRALELLNYLGALDDEGSLT 546
            G L+VYPLYSSLPP  Q +IF  AP P  PGGPPGRK VVSTN+AETSLTIDGIVYVVDPGFSKQK   VYNPRIRVESLLVSPIS+ASAQQRSGRAGRTRPGKCFRLYTE+SF++EL EQTYPEILRSKMSN VLTL KLG++DLVHFDFMDPPAPETLMRALELLNYLGALDD+G LT
Sbjct:  253 GPLEVYPLYSSLPPAKQSEIFNPAPSPVTPGGPPGRKVVVSTNIAETSLTIDGIVYVVDPGFSKQK---VYNPRIRVESLLVSPISQASAQQRSGRAGRTRPGKCFRLYTEKSFEQELQEQTYPEILRSKMSNVVLTLKKLGIDDLVHFDFMDPPAPETLMRALELLNYLGALDDDGELT 429
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BLAST of mRNA_H-elongata_contig53442.12687.1 vs. uniprot
Match: A0A4D9DBT4_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DBT4_9STRA)

HSP 1 Score: 303 bits (776), Expect = 1.380e-96
Identity = 152/180 (84.44%), Postives = 164/180 (91.11%), Query Frame = 1 
Query:    7 GDLDVYPLYSSLPPQAQQKIFREAPGPKFPGGPPGRKAVVSTNVAETSLTIDGIVYVVDPGFSKQKARNVYNPRIRVESLLVSPISRASAQQRSGRAGRTRPGKCFRLYTEQSFKEELLEQTYPEILRSKMSNTVLTLLKLGVEDLVHFDFMDPPAPETLMRALELLNYLGALDDEGSLT 546
            G+L VYPLYSSLPP  QQKIF EAPGP+ PG PPGRK VVSTN+AETSLTIDGIVYVVDPGFSKQK   +YNPR+RVESLLVSPISRASAQQRSGRAGRTRPGKCFRLYTE+SF+++L EQTYPEILRS+MSN VLTLLKLGVEDLVHFDFMDPPAPETL RALE LNYLGA+ DEG +T
Sbjct:  310 GELAVYPLYSSLPPTQQQKIFSEAPGPQAPGAPPGRKVVVSTNIAETSLTIDGIVYVVDPGFSKQK---IYNPRVRVESLLVSPISRASAQQRSGRAGRTRPGKCFRLYTEKSFQKDLQEQTYPEILRSQMSNVVLTLLKLGVEDLVHFDFMDPPAPETLARALEELNYLGAISDEGLIT 486
[Close]
BLAST of mRNA_H-elongata_contig53442.12687.1 vs. uniprot
Match: A0A7S2NYD2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2NYD2_9STRA)

HSP 1 Score: 290 bits (743), Expect = 2.120e-96
Identity = 147/180 (81.67%), Postives = 158/180 (87.78%), Query Frame = 1 
Query:    7 GDLDVYPLYSSLPPQAQQKIFREAPGPKFPGGPPGRKAVVSTNVAETSLTIDGIVYVVDPGFSKQKARNVYNPRIRVESLLVSPISRASAQQRSGRAGRTRPGKCFRLYTEQSFKEELLEQTYPEILRSKMSNTVLTLLKLGVEDLVHFDFMDPPAPETLMRALELLNYLGALDDEGSLT 546
             +L VYPLYSSLPP  Q+KIF  APGPK  GG PGRK VVSTN+AETSLTIDGIVYVVDPGFSKQK   VYNPRIRVESLLVSPISRASA+QR+GRAGRT+PGKCFRLYTE SF+ +L E TYPEILRS + N VLTL KLG++DLVHFDFMDPPAPETLMRALELLNYLGALDDEG LT
Sbjct:   47 AELVVYPLYSSLPPAQQKKIFNPAPGPKVVGGKPGRKVVVSTNIAETSLTIDGIVYVVDPGFSKQK---VYNPRIRVESLLVSPISRASAKQRAGRAGRTQPGKCFRLYTELSFRRDLQETTYPEILRSNLGNVVLTLKKLGIDDLVHFDFMDPPAPETLMRALELLNYLGALDDEGELT 223
[Close]
BLAST of mRNA_H-elongata_contig53442.12687.1 vs. uniprot
Match: A0A7S3DUD6_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S3DUD6_9STRA)

HSP 1 Score: 303 bits (776), Expect = 2.820e-96
Identity = 153/178 (85.96%), Postives = 164/178 (92.13%), Query Frame = 1 
Query:   13 LDVYPLYSSLPPQAQQKIFREAPGPKFPGGPPGRKAVVSTNVAETSLTIDGIVYVVDPGFSKQKARNVYNPRIRVESLLVSPISRASAQQRSGRAGRTRPGKCFRLYTEQSFKEELLEQTYPEILRSKMSNTVLTLLKLGVEDLVHFDFMDPPAPETLMRALELLNYLGALDDEGSLT 546
            L VYPLYSSLPPQAQ++IF  APGP+ PGGPPGRK V+STNVAETSLTIDGIVYVVDPGFSKQK   VYNPRIRVESLLVSPISRASA+QRSGRAGRTRPGKCFRLYTE+SF E+L E TYPEILRSKMS+ VLTL KLG++DLVHFDF+DPPAPETLMRALELLNYLGALDDEG LT
Sbjct:  303 LVVYPLYSSLPPQAQRRIFDAAPGPRVPGGPPGRKVVISTNVAETSLTIDGIVYVVDPGFSKQK---VYNPRIRVESLLVSPISRASARQRSGRAGRTRPGKCFRLYTEKSFHEDLQEATYPEILRSKMSSVVLTLKKLGIDDLVHFDFLDPPAPETLMRALELLNYLGALDDEGELT 477
[Close]
BLAST of mRNA_H-elongata_contig53442.12687.1 vs. uniprot
Match: A0A7S3ZQN2_9STRA (RNA helicase n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZQN2_9STRA)

HSP 1 Score: 302 bits (773), Expect = 7.520e-96
Identity = 152/182 (83.52%), Postives = 166/182 (91.21%), Query Frame = 1 
Query:    1 QEGDLDVYPLYSSLPPQAQQKIFREAPGPKFPGGPPGRKAVVSTNVAETSLTIDGIVYVVDPGFSKQKARNVYNPRIRVESLLVSPISRASAQQRSGRAGRTRPGKCFRLYTEQSFKEELLEQTYPEILRSKMSNTVLTLLKLGVEDLVHFDFMDPPAPETLMRALELLNYLGALDDEGSLT 546
            + G+L VYPLYSSLPP+ Q++IF +APGP+  GG PGRK VVSTN+AETSLTIDGIVYVVDPGFSKQK   VYNPRIRVESLLVSPISRASA+QR+GRAGRTRPGKCFRLYTE SFK EL EQTYPEILRSKMSN VLTL KLG++DLVHFDFMDPPAPETLMRALELLNYLGALDD+G+LT
Sbjct:  300 ERGELVVYPLYSSLPPRQQKRIFDKAPGPRVAGGMPGRKVVVSTNIAETSLTIDGIVYVVDPGFSKQK---VYNPRIRVESLLVSPISRASAKQRAGRAGRTRPGKCFRLYTEASFKSELQEQTYPEILRSKMSNVVLTLKKLGIDDLVHFDFMDPPAPETLMRALELLNYLGALDDDGALT 478
[Close]
BLAST of mRNA_H-elongata_contig53442.12687.1 vs. uniprot
Match: A0A7S2SQY7_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SQY7_9STRA)

HSP 1 Score: 301 bits (772), Expect = 1.290e-95
Identity = 152/180 (84.44%), Postives = 161/180 (89.44%), Query Frame = 1 
Query:    7 GDLDVYPLYSSLPPQAQQKIFREAPGPKFPGGPPGRKAVVSTNVAETSLTIDGIVYVVDPGFSKQKARNVYNPRIRVESLLVSPISRASAQQRSGRAGRTRPGKCFRLYTEQSFKEELLEQTYPEILRSKMSNTVLTLLKLGVEDLVHFDFMDPPAPETLMRALELLNYLGALDDEGSLT 546
            G + VYPLYSSLPP  Q +IF  AP P+ PGGPPGRK VVSTN+AETSLTIDGIVYVVDPGFSKQK   VYNPRIRVESLLVSPISRASAQQRSGRAGRTRPGKCFRLYTE+SF +EL EQTYPEILRSKMS  VLTL KLG++DLVHFDFMDPPAPETLMRALELLNYLGALDDEG +T
Sbjct:  313 GPISVYPLYSSLPPAKQNEIFNPAPEPRTPGGPPGRKIVVSTNIAETSLTIDGIVYVVDPGFSKQK---VYNPRIRVESLLVSPISRASAQQRSGRAGRTRPGKCFRLYTEKSFHQELQEQTYPEILRSKMSTVVLTLKKLGIDDLVHFDFMDPPAPETLMRALELLNYLGALDDEGDMT 489
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig53442.12687.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G1I0_ECTSI2.570e-10995.58RNA helicase n=1 Tax=Ectocarpus siliculosus TaxID=... [more]
A0A836CBU4_9STRA9.010e-10490.56RNA helicase n=1 Tax=Tribonema minus TaxID=303371 ... [more]
A0A7S2UZ15_9STRA2.840e-10086.19RNA helicase n=1 Tax=Fibrocapsa japonica TaxID=946... [more]
A0A7S2YLB6_9STRA3.460e-9885.96Hypothetical protein n=1 Tax=Amphiprora paludosa T... [more]
A0A7S2HR77_9STRA4.220e-9785.00Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A4D9DBT4_9STRA1.380e-9684.44Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
A0A7S2NYD2_9STRA2.120e-9681.67Hypothetical protein (Fragment) n=1 Tax=Leptocylin... [more]
A0A7S3DUD6_9STRA2.820e-9685.96Hypothetical protein n=1 Tax=Amphiprora paludosa T... [more]
A0A7S3ZQN2_9STRA7.520e-9683.52RNA helicase n=1 Tax=Pelagomonas calceolata TaxID=... [more]
A0A7S2SQY7_9STRA1.290e-9584.44Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig53442contigH-elongata_contig53442:222..2659 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score337.0
Seed ortholog evalue5.6e-90
Seed eggNOG ortholog2880.D7G1I0
Preferred nameDHX15
KEGG koko:K04615,ko:K12820,ko:K14305
KEGG TC1.l.1,9.A.14.15.1
KEGG Pathwayko03013,ko03040,ko04024,ko04080,ko04727,ko04742,ko04915,ko05032,map03013,map03040,map04024,map04080,map04727,map04742,map04915,map05032
KEGG ModuleM00427
GOsGO:0000166,GO:0000375,GO:0000377,GO:0000390,GO:0000398,GO:0000460,GO:0000462,GO:0000463,GO:0000466,GO:0000470,GO:0001932,GO:0001934,GO:0003674,GO:0003676,GO:0003723,GO:0003724,GO:0003725,GO:0003729,GO:0003824,GO:0004004,GO:0004386,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005684,GO:0005689,GO:0005730,GO:0005737,GO:0005739,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008026,GO:0008144,GO:0008150,GO:0008152,GO:0008186,GO:0008380,GO:0009507,GO:0009526,GO:0009536,GO:0009893,GO:0009941,GO:0009966,GO:0009967,GO:0009987,GO:0010467,GO:0010562,GO:0010604,GO:0010646,GO:0010647,GO:0016020,GO:0016043,GO:0016070,GO:0016071,GO:0016072,GO:0016462,GO:0016604,GO:0016607,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0019220,GO:0019222,GO:0022411,GO:0022613,GO:0023051,GO:0023056,GO:0030490,GO:0030554,GO:0030684,GO:0030686,GO:0031323,GO:0031325,GO:0031399,GO:0031401,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032268,GO:0032270,GO:0032553,GO:0032555,GO:0032559,GO:0032872,GO:0032874,GO:0032984,GO:0032988,GO:0032991,GO:0034470,GO:0034641,GO:0034660,GO:0035639,GO:0036094,GO:0042254,GO:0042273,GO:0042274,GO:0042325,GO:0042327,GO:0042623,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043408,GO:0043410,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0045937,GO:0046483,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051174,GO:0051246,GO:0051247,GO:0060255,GO:0065007,GO:0070013,GO:0070035,GO:0070302,GO:0070304,GO:0071014,GO:0071704,GO:0071826,GO:0071840,GO:0080090,GO:0080134,GO:0080135,GO:0090304,GO:0097159,GO:0097367,GO:0140098,GO:1900744,GO:1900745,GO:1901265,GO:1901360,GO:1901363,GO:1902531,GO:1902533,GO:1990904
EggNOG free text desc.helicase activity
EggNOG OGsCOG1643@1,KOG0925@2759
EC3.6.4.13
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03009,ko03019,ko03036,ko03041,ko04030
Hectar predicted targeting categoryother localisation
Exons3
Model size570
Cds size570
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig53442.12687.1prot_H-elongata_contig53442.12687.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig53442 222..2659 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930871.1618912-CDS-H-elongata_contig53442:221..3831622930871.1618912-CDS-H-elongata_contig53442:221..383Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53442 222..383 -
1691679605.7137425-CDS-H-elongata_contig53442:221..3831691679605.7137425-CDS-H-elongata_contig53442:221..383Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53442 222..383 -
1622930871.1898253-CDS-H-elongata_contig53442:1048..12431622930871.1898253-CDS-H-elongata_contig53442:1048..1243Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53442 1049..1243 -
1691679605.7285645-CDS-H-elongata_contig53442:1048..12431691679605.7285645-CDS-H-elongata_contig53442:1048..1243Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53442 1049..1243 -
1622930871.218253-CDS-H-elongata_contig53442:2446..26591622930871.218253-CDS-H-elongata_contig53442:2446..2659Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53442 2447..2659 -
1691679605.7384815-CDS-H-elongata_contig53442:2446..26591691679605.7384815-CDS-H-elongata_contig53442:2446..2659Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53442 2447..2659 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig53442.12687.1

>prot_H-elongata_contig53442.12687.1 ID=prot_H-elongata_contig53442.12687.1|Name=mRNA_H-elongata_contig53442.12687.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=190bp
QEGDLDVYPLYSSLPPQAQQKIFREAPGPKFPGGPPGRKAVVSTNVAETS
LTIDGIVYVVDPGFSKQKARNVYNPRIRVESLLVSPISRASAQQRSGRAG
RTRPGKCFRLYTEQSFKEELLEQTYPEILRSKMSNTVLTLLKLGVEDLVH
FDFMDPPAPETLMRALELLNYLGALDDEGSLTVRLLDPI*
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mRNA from alignment at H-elongata_contig53442:222..2659-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig53442.12687.1 ID=mRNA_H-elongata_contig53442.12687.1|Name=mRNA_H-elongata_contig53442.12687.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2438bp|location=Sequence derived from alignment at H-elongata_contig53442:222..2659- (Himanthalia elongata Himel1 dioecious)
CAGGAAGGGGACCTCGACGTATACCCCCTTTACTCGTCTCTGCCCCCCCA
AGCGCAGCAGAAGATCTTCCGCGAGGCCCCTGGGCCCAAGTTCCCTGGCG
GGCCTCCCGGGCGAAAGGCGGTGGTGTCGACGAACGTTGCCGAAACTTCG
CTCACGATCGATGGCATCGTCTACGTGGTGGACCCCGGGTTCTCCAAGCA
GAAGGCGAGAAATGTGACGGGGACAGGGGACGCACGCGGGGCACTAGTGT
GTGTGTGTGTGTGTGTGTTAGATTGAGAGAGAGAGCGAGGGTGGGGTAGT
TTTTATTTAAAGTTGTATCTGACATGATTTTAGTTATTTTGTTAGCTTGG
TTTCATTATTTGGTCATAAGTGCCTTGTAAGGTGTGGGATGTGTAAAGGA
GGGGGGACTTTGTTAGTTTCGTTTCGACGTTGAGATTAATTTACCGATTT
TACTATGCTTAGTGGGTACCATTTTTTTCCCCTCTCCCCTTCCACACACA
CCTTATTTCCCGCTCCGTCGTCTCGAGGCCTTATACAGCCAAGGGATGCA
AAATTTTGCACCTCTTTTCTGCCTCCCCTTCCCGCCGCCTAAAAATTATA
GTGCATAATAAACTAATGTATCAGGTTTTCAGGAGCAAGGGGTGTATTTT
TTGTGCGAAATATATTAAGTAGTGTGTGTTACAGTGTTAATGTAAGCTTC
TTGCGGGCGGCGCGGGGTCACTACCGCTGTGCCTGAAAGCAATCCATCAG
TCGCAGCAGCAGGATTGGAGGAGGTCGAAGCCGAGTGAAGCGGTATATAT
ATATATATTTTTTAACTCAACGTGATGGCCAAACAATTTCGTACGGAAAG
TTCCAATCGTAAAAAGCGGCCAACGTTTTGATCGGATTGGGCGACAGTGA
CAGTAACAGCTATAGCCCAGCTGGGTTTCGGCCAAATAGACTTGCCTTTT
TTCCGACGGCAGTACCTGGTAGCTCTCACGAACAGCGGCAATTTAGGTGC
TAAAGCAGGGAGGTATTGGCATAATAGGGCGAATTGAAGAGGATATGTCC
AGCGCCGCGTGACCATGTGTGATTGGCGGGCTCTCCAACAGCGCCCCGAT
AAATTTAGAACATGAACAGGCTGTCGATCAAAATGCGGTAAATAAAGCAT
GTAACCTGTGGGAGGGGGGGGGTTAATGGCAGAGGAATTAAGTTATGATG
TATTGCGCCGCGCGACAGCGGGTAAAAGTAAAGCCGCCAAATATAACAGT
TTGCCTCCTCTCCCTTTCGCCTTCCACAAACCCAGAAGACCTTCATGCTT
TTTATATGTAGATCGTTGCCTTGCGATGCCGCCGCTGCTGCTGCTTCCGT
TAACGTCTCTTATTTTTCGAACGCCTCTGTTCTCCTTCTCCTCTTTTGTC
TTCTTCTCGCGGAAAGGTGTACAATCCCCGCATCCGGGTGGAGTCGCTCC
TGGTGAGCCCGATCTCGAGGGCCAGTGCTCAGCAGAGGAGCGGTCGCGCG
GGTCGGACGAGGCCGGGCAAGTGCTTCCGGCTGTACACGGAGCAGTCTTT
CAAGGAGGAGCTGCTGGAGCAGACCTACCCGGAAATCTTGCGATCCAAGA
TGAGCAACACGGTGCGTTTTCTAAGCGTGGAGGATTACATAAAAGACAGC
GATGGGGGTGATGGGGAGAGGCCGTTCTCTCGTGGTAACACGCGGGCTGC
GTTTGGTTTCGAGAAGCACGATAATCCGGGTATAATTAGCCCCCCTGTCC
TATTAGTCAAACCGCGTCCTTTTCGCGTGCAGCTGAGACGAACTGGGGTG
AAAGGGATTGGGGGAGGGTTTATTTAAGGTACAGGATATATCTAACGAGC
GGAATGCGAAATAGACATTTAAGGTACAAAACACCTCCTACGTAACGTAT
TTTTTCTTCGCCCCCCCCCCTCCCCTCCCAACCTCGAGTGTATCGTAAAC
AACTCCGGACTTTTGGGAAGGAAGGAAGGCAGCCGATGCCTCGTAGCGCT
GTACGACGCTCCTCCTGACGTCGACCTGTGCCTTGACCACACGCTGGCGT
CTCGTTTCGATGAGGCCACCCGTTTCATTTTCCAAACCGGCGCAGATTAG
TCAGAGCCCACCATCTAACCGACACTCGTTAGGTTTCTATTCGGTACTAG
TCGTTCCGCATCGTAAACGGCTCATTTTGTCTGTAAGCATTCCCGCTCTC
CAACCGGCACCTGTTGCCCCGACCTCCCCCCCCACTCCCAACCTGCACTT
TTCGATTCGCGTCGTGGATACACAAGGTGCTTACGTTGCTGAAGCTCGGG
GTAGAAGATCTGGTTCACTTCGACTTCATGGATCCTCCGGCCCCGGAGAC
TCTGATGCGTGCGCTGGAGCTGCTGAATTACTTGGGAGCGCTTGATGACG
AGGGATCGCTCACGGTACGGCTCTTGGATCCAATCTGA
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Coding sequence (CDS) from alignment at H-elongata_contig53442:222..2659-

>mRNA_H-elongata_contig53442.12687.1 ID=mRNA_H-elongata_contig53442.12687.1|Name=mRNA_H-elongata_contig53442.12687.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1140bp|location=Sequence derived from alignment at H-elongata_contig53442:222..2659- (Himanthalia elongata Himel1 dioecious)
CAGGAAGGGGACCTCGACGTATACCCCCTTTACTCGTCTCTGCCCCCCCA
AGCGCAGCAGAAGATCTTCCGCGAGGCCCCTGGGCCCAAGTTCCCTGGCG
GGCCTCCCGGGCGAAAGGCGGTGGTGTCGACGAACGTTGCCGAAACTTCG
CTCACGATCGATGGCATCGTCTACGTGGTGGACCCCGGGTTCTCCAAGCA
GAAGGCGAGAAATCAGGAAGGGGACCTCGACGTATACCCCCTTTACTCGT
CTCTGCCCCCCCAAGCGCAGCAGAAGATCTTCCGCGAGGCCCCTGGGCCC
AAGTTCCCTGGCGGGCCTCCCGGGCGAAAGGCGGTGGTGTCGACGAACGT
TGCCGAAACTTCGCTCACGATCGATGGCATCGTCTACGTGGTGGACCCCG
GGTTCTCCAAGCAGAAGGCGAGAAATGTGTACAATCCCCGCATCCGGGTG
GAGTCGCTCCTGGTGAGCCCGATCTCGAGGGCCAGTGCTCAGCAGAGGAG
CGGTCGCGCGGGTCGGACGAGGCCGGGCAAGTGCTTCCGGCTGTACACGG
AGCAGTCTTTCAAGGAGGAGCTGCTGGAGCAGACCTACCCGGAAATCTTG
CGATCCAAGATGAGCAACACGGTGTACAATCCCCGCATCCGGGTGGAGTC
GCTCCTGGTGAGCCCGATCTCGAGGGCCAGTGCTCAGCAGAGGAGCGGTC
GCGCGGGTCGGACGAGGCCGGGCAAGTGCTTCCGGCTGTACACGGAGCAG
TCTTTCAAGGAGGAGCTGCTGGAGCAGACCTACCCGGAAATCTTGCGATC
CAAGATGAGCAACACGGTGCTTACGTTGCTGAAGCTCGGGGTAGAAGATC
TGGTTCACTTCGACTTCATGGATCCTCCGGCCCCGGAGACTCTGATGCGT
GCGCTGGAGCTGCTGAATTACTTGGGAGCGCTTGATGACGAGGGATCGCT
CACGGTACGGCTCTTGGATCCAATCTGAGTGCTTACGTTGCTGAAGCTCG
GGGTAGAAGATCTGGTTCACTTCGACTTCATGGATCCTCCGGCCCCGGAG
ACTCTGATGCGTGCGCTGGAGCTGCTGAATTACTTGGGAGCGCTTGATGA
CGAGGGATCGCTCACGGTACGGCTCTTGGATCCAATCTGA
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