prot_H-elongata_contig53442.12687.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-elongata_contig53442.12687.1
Unique Name	prot_H-elongata_contig53442.12687.1
Type	polypeptide
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length	190

Homology

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BLAST of mRNA_H-elongata_contig53442.12687.1 vs. uniprot
Match: D7G1I0_ECTSI (RNA helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1I0_ECTSI)

HSP 1 Score: 337 bits (863), Expect = 2.570e-109
Identity = 173/181 (95.58%), Postives = 174/181 (96.13%), Query Frame = 0

Query:    2 EGDLDVYPLYSSLPPQAQQKIFREAPGPKFPGGPPGRKAVVSTNVAETSLTIDGIVYVVDPGFSKQKARNVYNPRIRVESLLVSPISRASAQQRSGRAGRTRPGKCFRLYTEQSFKEELLEQTYPEILRSKMSNTVLTLLKLGVEDLVHFDFMDPPAPETLMRALELLNYLGALDDEGSLT 182
            EG+L VYPLYSSLPP AQQKIFREAPGPKFPGGP GRK VVSTNVAETSLTIDGIVYVVDPGFSKQK   VYNPRIRVESLLVSPISRASAQQRSGRAGRTRPGKCFRLYTEQSFKEELLEQTYPEILRSKMSNTVLTLLKLGVEDLVHFDFMDPPAPETLMRALELLNYLGALDDEGSLT
Sbjct:  295 EGELAVYPLYSSLPPAAQQKIFREAPGPKFPGGPVGRKVVVSTNVAETSLTIDGIVYVVDPGFSKQK---VYNPRIRVESLLVSPISRASAQQRSGRAGRTRPGKCFRLYTEQSFKEELLEQTYPEILRSKMSNTVLTLLKLGVEDLVHFDFMDPPAPETLMRALELLNYLGALDDEGSLT 472

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BLAST of mRNA_H-elongata_contig53442.12687.1 vs. uniprot
Match: A0A836CBU4_9STRA (RNA helicase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBU4_9STRA)

HSP 1 Score: 322 bits (826), Expect = 9.010e-104
Identity = 163/180 (90.56%), Postives = 171/180 (95.00%), Query Frame = 0

Query:    3 GDLDVYPLYSSLPPQAQQKIFREAPGPKFPGGPPGRKAVVSTNVAETSLTIDGIVYVVDPGFSKQKARNVYNPRIRVESLLVSPISRASAQQRSGRAGRTRPGKCFRLYTEQSFKEELLEQTYPEILRSKMSNTVLTLLKLGVEDLVHFDFMDPPAPETLMRALELLNYLGALDDEGSLT 182
            G++ VYPLYSSL PQAQQKIFR+APGPK+PGGPPGRK VVSTN+AETSLTIDGIVYVVDPGFSKQK   VYNPRIRVESLLVSPISRASA+QRSGRAGRTRPGKCFRLYTE+SF+EELLEQTYPEILRSKMS  VLTLLKLGVEDLVHFDFMDPPAPETLMRALELLNYLGALDDEG LT
Sbjct:  298 GEVMVYPLYSSLAPQAQQKIFRDAPGPKYPGGPPGRKVVVSTNIAETSLTIDGIVYVVDPGFSKQK---VYNPRIRVESLLVSPISRASAKQRSGRAGRTRPGKCFRLYTERSFQEELLEQTYPEILRSKMSTVVLTLLKLGVEDLVHFDFMDPPAPETLMRALELLNYLGALDDEGCLT 474

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BLAST of mRNA_H-elongata_contig53442.12687.1 vs. uniprot
Match: A0A7S2UZ15_9STRA (RNA helicase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UZ15_9STRA)

HSP 1 Score: 313 bits (803), Expect = 2.840e-100
Identity = 156/181 (86.19%), Postives = 169/181 (93.37%), Query Frame = 0

Query:    2 EGDLDVYPLYSSLPPQAQQKIFREAPGPKFPGGPPGRKAVVSTNVAETSLTIDGIVYVVDPGFSKQKARNVYNPRIRVESLLVSPISRASAQQRSGRAGRTRPGKCFRLYTEQSFKEELLEQTYPEILRSKMSNTVLTLLKLGVEDLVHFDFMDPPAPETLMRALELLNYLGALDDEGSLT 182
            EG++ V+PLYSSLPP+ QQ IF+ APGP+FPGGPPGRK VVSTN+AETSLTIDG+VYVVDPGFSKQK   VYNPRIRVESLLVSPIS+ASA QRSGRAGRTRPGKCFRLYTE+SF +EL EQTYPEILRSKMSN VLTLLKLGVEDLVHFDFMDPPAPETLMRALELLNYLGALDD+G+LT
Sbjct:  308 EGEMVVFPLYSSLPPKQQQLIFQSAPGPRFPGGPPGRKVVVSTNIAETSLTIDGVVYVVDPGFSKQK---VYNPRIRVESLLVSPISKASANQRSGRAGRTRPGKCFRLYTEKSFHQELQEQTYPEILRSKMSNVVLTLLKLGVEDLVHFDFMDPPAPETLMRALELLNYLGALDDDGNLT 485

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BLAST of mRNA_H-elongata_contig53442.12687.1 vs. uniprot
Match: A0A7S2YLB6_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2YLB6_9STRA)

HSP 1 Score: 303 bits (776), Expect = 3.460e-98
Identity = 153/178 (85.96%), Postives = 164/178 (92.13%), Query Frame = 0

Query:    5 LDVYPLYSSLPPQAQQKIFREAPGPKFPGGPPGRKAVVSTNVAETSLTIDGIVYVVDPGFSKQKARNVYNPRIRVESLLVSPISRASAQQRSGRAGRTRPGKCFRLYTEQSFKEELLEQTYPEILRSKMSNTVLTLLKLGVEDLVHFDFMDPPAPETLMRALELLNYLGALDDEGSLT 182
            L VYPLYSSLPPQAQ++IF  APGP+ PGGPPGRK V+STNVAETSLTIDGIVYVVDPGFSKQK   VYNPRIRVESLLVSPISRASA+QRSGRAGRTRPGKCFRLYTE+SF E+L E TYPEILRSKMS+ VLTL KLG++DLVHFDF+DPPAPETLMRALELLNYLGALDDEG LT
Sbjct:  127 LVVYPLYSSLPPQAQRRIFDAAPGPRVPGGPPGRKVVISTNVAETSLTIDGIVYVVDPGFSKQK---VYNPRIRVESLLVSPISRASARQRSGRAGRTRPGKCFRLYTEKSFHEDLQEATYPEILRSKMSSVVLTLKKLGIDDLVHFDFLDPPAPETLMRALELLNYLGALDDEGELT 301

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BLAST of mRNA_H-elongata_contig53442.12687.1 vs. uniprot
Match: A0A7S2HR77_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2HR77_9STRA)

HSP 1 Score: 304 bits (778), Expect = 4.220e-97
Identity = 153/180 (85.00%), Postives = 163/180 (90.56%), Query Frame = 0

Query:    3 GDLDVYPLYSSLPPQAQQKIFREAPGPKFPGGPPGRKAVVSTNVAETSLTIDGIVYVVDPGFSKQKARNVYNPRIRVESLLVSPISRASAQQRSGRAGRTRPGKCFRLYTEQSFKEELLEQTYPEILRSKMSNTVLTLLKLGVEDLVHFDFMDPPAPETLMRALELLNYLGALDDEGSLT 182
            G L+VYPLYSSLPP  Q +IF  AP P  PGGPPGRK VVSTN+AETSLTIDGIVYVVDPGFSKQK   VYNPRIRVESLLVSPIS+ASAQQRSGRAGRTRPGKCFRLYTE+SF++EL EQTYPEILRSKMSN VLTL KLG++DLVHFDFMDPPAPETLMRALELLNYLGALDD+G LT
Sbjct:  253 GPLEVYPLYSSLPPAKQSEIFNPAPSPVTPGGPPGRKVVVSTNIAETSLTIDGIVYVVDPGFSKQK---VYNPRIRVESLLVSPISQASAQQRSGRAGRTRPGKCFRLYTEKSFEQELQEQTYPEILRSKMSNVVLTLKKLGIDDLVHFDFMDPPAPETLMRALELLNYLGALDDDGELT 429

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BLAST of mRNA_H-elongata_contig53442.12687.1 vs. uniprot
Match: A0A4D9DBT4_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DBT4_9STRA)

HSP 1 Score: 303 bits (776), Expect = 1.380e-96
Identity = 152/180 (84.44%), Postives = 164/180 (91.11%), Query Frame = 0

Query:    3 GDLDVYPLYSSLPPQAQQKIFREAPGPKFPGGPPGRKAVVSTNVAETSLTIDGIVYVVDPGFSKQKARNVYNPRIRVESLLVSPISRASAQQRSGRAGRTRPGKCFRLYTEQSFKEELLEQTYPEILRSKMSNTVLTLLKLGVEDLVHFDFMDPPAPETLMRALELLNYLGALDDEGSLT 182
            G+L VYPLYSSLPP  QQKIF EAPGP+ PG PPGRK VVSTN+AETSLTIDGIVYVVDPGFSKQK   +YNPR+RVESLLVSPISRASAQQRSGRAGRTRPGKCFRLYTE+SF+++L EQTYPEILRS+MSN VLTLLKLGVEDLVHFDFMDPPAPETL RALE LNYLGA+ DEG +T
Sbjct:  310 GELAVYPLYSSLPPTQQQKIFSEAPGPQAPGAPPGRKVVVSTNIAETSLTIDGIVYVVDPGFSKQK---IYNPRVRVESLLVSPISRASAQQRSGRAGRTRPGKCFRLYTEKSFQKDLQEQTYPEILRSQMSNVVLTLLKLGVEDLVHFDFMDPPAPETLARALEELNYLGAISDEGLIT 486

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BLAST of mRNA_H-elongata_contig53442.12687.1 vs. uniprot
Match: A0A7S2NYD2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2NYD2_9STRA)

HSP 1 Score: 290 bits (743), Expect = 2.120e-96
Identity = 147/180 (81.67%), Postives = 158/180 (87.78%), Query Frame = 0

Query:    3 GDLDVYPLYSSLPPQAQQKIFREAPGPKFPGGPPGRKAVVSTNVAETSLTIDGIVYVVDPGFSKQKARNVYNPRIRVESLLVSPISRASAQQRSGRAGRTRPGKCFRLYTEQSFKEELLEQTYPEILRSKMSNTVLTLLKLGVEDLVHFDFMDPPAPETLMRALELLNYLGALDDEGSLT 182
             +L VYPLYSSLPP  Q+KIF  APGPK  GG PGRK VVSTN+AETSLTIDGIVYVVDPGFSKQK   VYNPRIRVESLLVSPISRASA+QR+GRAGRT+PGKCFRLYTE SF+ +L E TYPEILRS + N VLTL KLG++DLVHFDFMDPPAPETLMRALELLNYLGALDDEG LT
Sbjct:   47 AELVVYPLYSSLPPAQQKKIFNPAPGPKVVGGKPGRKVVVSTNIAETSLTIDGIVYVVDPGFSKQK---VYNPRIRVESLLVSPISRASAKQRAGRAGRTQPGKCFRLYTELSFRRDLQETTYPEILRSNLGNVVLTLKKLGIDDLVHFDFMDPPAPETLMRALELLNYLGALDDEGELT 223

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BLAST of mRNA_H-elongata_contig53442.12687.1 vs. uniprot
Match: A0A7S3DUD6_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S3DUD6_9STRA)

HSP 1 Score: 303 bits (776), Expect = 2.820e-96
Identity = 153/178 (85.96%), Postives = 164/178 (92.13%), Query Frame = 0

Query:    5 LDVYPLYSSLPPQAQQKIFREAPGPKFPGGPPGRKAVVSTNVAETSLTIDGIVYVVDPGFSKQKARNVYNPRIRVESLLVSPISRASAQQRSGRAGRTRPGKCFRLYTEQSFKEELLEQTYPEILRSKMSNTVLTLLKLGVEDLVHFDFMDPPAPETLMRALELLNYLGALDDEGSLT 182
            L VYPLYSSLPPQAQ++IF  APGP+ PGGPPGRK V+STNVAETSLTIDGIVYVVDPGFSKQK   VYNPRIRVESLLVSPISRASA+QRSGRAGRTRPGKCFRLYTE+SF E+L E TYPEILRSKMS+ VLTL KLG++DLVHFDF+DPPAPETLMRALELLNYLGALDDEG LT
Sbjct:  303 LVVYPLYSSLPPQAQRRIFDAAPGPRVPGGPPGRKVVISTNVAETSLTIDGIVYVVDPGFSKQK---VYNPRIRVESLLVSPISRASARQRSGRAGRTRPGKCFRLYTEKSFHEDLQEATYPEILRSKMSSVVLTLKKLGIDDLVHFDFLDPPAPETLMRALELLNYLGALDDEGELT 477

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BLAST of mRNA_H-elongata_contig53442.12687.1 vs. uniprot
Match: A0A7S3ZQN2_9STRA (RNA helicase n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZQN2_9STRA)

HSP 1 Score: 302 bits (773), Expect = 7.520e-96
Identity = 152/182 (83.52%), Postives = 166/182 (91.21%), Query Frame = 0

Query:    1 QEGDLDVYPLYSSLPPQAQQKIFREAPGPKFPGGPPGRKAVVSTNVAETSLTIDGIVYVVDPGFSKQKARNVYNPRIRVESLLVSPISRASAQQRSGRAGRTRPGKCFRLYTEQSFKEELLEQTYPEILRSKMSNTVLTLLKLGVEDLVHFDFMDPPAPETLMRALELLNYLGALDDEGSLT 182
            + G+L VYPLYSSLPP+ Q++IF +APGP+  GG PGRK VVSTN+AETSLTIDGIVYVVDPGFSKQK   VYNPRIRVESLLVSPISRASA+QR+GRAGRTRPGKCFRLYTE SFK EL EQTYPEILRSKMSN VLTL KLG++DLVHFDFMDPPAPETLMRALELLNYLGALDD+G+LT
Sbjct:  300 ERGELVVYPLYSSLPPRQQKRIFDKAPGPRVAGGMPGRKVVVSTNIAETSLTIDGIVYVVDPGFSKQK---VYNPRIRVESLLVSPISRASAKQRAGRAGRTRPGKCFRLYTEASFKSELQEQTYPEILRSKMSNVVLTLKKLGIDDLVHFDFMDPPAPETLMRALELLNYLGALDDDGALT 478

[Close]

BLAST of mRNA_H-elongata_contig53442.12687.1 vs. uniprot
Match: A0A7S2SQY7_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SQY7_9STRA)

HSP 1 Score: 301 bits (772), Expect = 1.290e-95
Identity = 152/180 (84.44%), Postives = 161/180 (89.44%), Query Frame = 0

Query:    3 GDLDVYPLYSSLPPQAQQKIFREAPGPKFPGGPPGRKAVVSTNVAETSLTIDGIVYVVDPGFSKQKARNVYNPRIRVESLLVSPISRASAQQRSGRAGRTRPGKCFRLYTEQSFKEELLEQTYPEILRSKMSNTVLTLLKLGVEDLVHFDFMDPPAPETLMRALELLNYLGALDDEGSLT 182
            G + VYPLYSSLPP  Q +IF  AP P+ PGGPPGRK VVSTN+AETSLTIDGIVYVVDPGFSKQK   VYNPRIRVESLLVSPISRASAQQRSGRAGRTRPGKCFRLYTE+SF +EL EQTYPEILRSKMS  VLTL KLG++DLVHFDFMDPPAPETLMRALELLNYLGALDDEG +T
Sbjct:  313 GPISVYPLYSSLPPAKQNEIFNPAPEPRTPGGPPGRKIVVSTNIAETSLTIDGIVYVVDPGFSKQK---VYNPRIRVESLLVSPISRASAQQRSGRAGRTRPGKCFRLYTEKSFHQELQEQTYPEILRSKMSTVVLTLKKLGIDDLVHFDFMDPPAPETLMRALELLNYLGALDDEGDMT 489

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig53442.12687.1 vs. uniprot

BLAST of mRNA_H-elongata_contig53442.12687.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7G1I0_ECTSI	2.570e-109	95.58	RNA helicase n=1 Tax=Ectocarpus siliculosus TaxID=...	[more]
A0A836CBU4_9STRA	9.010e-104	90.56	RNA helicase n=1 Tax=Tribonema minus TaxID=303371 ...	[more]
A0A7S2UZ15_9STRA	2.840e-100	86.19	RNA helicase n=1 Tax=Fibrocapsa japonica TaxID=946...	[more]
A0A7S2YLB6_9STRA	3.460e-98	85.96	Hypothetical protein n=1 Tax=Amphiprora paludosa T...	[more]
A0A7S2HR77_9STRA	4.220e-97	85.00	Hypothetical protein n=1 Tax=Dictyocha speculum Ta...	[more]
A0A4D9DBT4_9STRA	1.380e-96	84.44	Uncharacterized protein n=2 Tax=Monodopsidaceae Ta...	[more]
A0A7S2NYD2_9STRA	2.120e-96	81.67	Hypothetical protein (Fragment) n=1 Tax=Leptocylin...	[more]
A0A7S3DUD6_9STRA	2.820e-96	85.96	Hypothetical protein n=1 Tax=Amphiprora paludosa T...	[more]
A0A7S3ZQN2_9STRA	7.520e-96	83.52	RNA helicase n=1 Tax=Pelagomonas calceolata TaxID=...	[more]
A0A7S2SQY7_9STRA	1.290e-95	84.44	Hypothetical protein n=1 Tax=Rhizochromulina marin...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001650	Helicase, C-terminal	SMART	SM00490	helicmild6	coord: 1..103 e-value: 2.6E-10 score: 50.3
IPR001650	Helicase, C-terminal	PFAM	PF00271	Helicase_C	coord: 5..102 e-value: 7.5E-8 score: 32.7
IPR001650	Helicase, C-terminal	PROSITE	PS51194	HELICASE_CTER	coord: 1..144 score: 14.263
IPR042035	DEAH helicase, winged-helix domain	GENE3D	1.10.10.2130		coord: 125..171 e-value: 1.7E-23 score: 83.9
None	No IPR available	GENE3D	3.40.50.300		coord: 1..124 e-value: 6.2E-45 score: 154.9
None	No IPR available	PANTHER	PTHR18934	ATP-DEPENDENT RNA HELICASE	coord: 3..182
None	No IPR available	PANTHER	PTHR18934:SF217	PRE-MRNA-SPLICING FACTOR ATP-DEPENDENT RNA HELICASE DEAH3-RELATED	coord: 3..182
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 3..181

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig53442	contig	H-elongata_contig53442:222..2659 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig53442.12687.1	mRNA_H-elongata_contig53442.12687.1	Himanthalia elongata Himel1 dioecious	mRNA	H-elongata_contig53442 222..2659 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-elongata_contig53442.12687.1 ID=prot_H-elongata_contig53442.12687.1|Name=mRNA_H-elongata_contig53442.12687.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=190bp
QEGDLDVYPLYSSLPPQAQQKIFREAPGPKFPGGPPGRKAVVSTNVAETS
LTIDGIVYVVDPGFSKQKARNVYNPRIRVESLLVSPISRASAQQRSGRAG
RTRPGKCFRLYTEQSFKEELLEQTYPEILRSKMSNTVLTLLKLGVEDLVH
FDFMDPPAPETLMRALELLNYLGALDDEGSLTVRLLDPI*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR001650	Helicase_C
IPR042035	DEAH_win-hel_dom
IPR027417	P-loop_NTPase