mRNA_H-elongata_contig53436.12685.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig53436.12685.1 vs. uniprot
Match: D7FVZ4_ECTSI (Ferredoxin nitrite reductase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FVZ4_ECTSI) HSP 1 Score: 435 bits (1118), Expect = 6.350e-147 Identity = 203/278 (73.02%), Postives = 244/278 (87.77%), Query Frame = 1
Query: 1 QVPNGILTTKQLRFMADKASKYDPSVGVLDITTRMNMQIRGVPLEDASDIINGIYDLGLTSLMSGMDNVRNMVGSPIAGIDPIEMVDTRQLCVEINDMVTAGRKGNPAVTHLPRKINFALSGGRDDFAHTMINDVGLQPHLHPATGEIGFNVVVGGLFSIKRVAESIPIDMWIRQGDVVNFLEAVLLAFRDLGPRKNRQQARIMYMMEEMGMEKFRETLVEYTRKIDPAFDPKPAAPAPPEPYARRDILGVHPQKQEGKSWVCVMTPAGRLTPQEVSL 834
++PNGI+TT+QLRF AD KYDPSVGVLDITTRM +Q+RGV LEDAS +I+ +YDLGLTSLM+GMDNVRNMVGSPIAG+DP+EMVDTRQLC EINDM+T RKGNPA+T+LPRKIN A+SGGRDD+AHTMIND+GLQPH HP TGEIGFNVVVGG FS++R AESIP+DMWI+Q D V F + +LLAFR+LG RK RQ+AR+M+M+EEMGMEKFRET+VEY + +D AF+P+PAAPAP E ++RR+ +GVHPQKQEGKSWVCV TPAGRL ++ +
Sbjct: 188 KIPNGIMTTEQLRFCADAVGKYDPSVGVLDITTRMALQLRGVTLEDASGVIDNLYDLGLTSLMTGMDNVRNMVGSPIAGLDPLEMVDTRQLCNEINDMITDNRKGNPALTNLPRKINIAISGGRDDYAHTMINDIGLQPHAHPETGEIGFNVVVGGFFSVRRAAESIPLDMWIKQNDTVAFCKGMLLAFRNLGSRKKRQEARLMFMIEEMGMEKFRETVVEYVKGVDSAFEPQPAAPAPEEAFSRRNYVGVHPQKQEGKSWVCVTTPAGRLMAEDARM 465
BLAST of mRNA_H-elongata_contig53436.12685.1 vs. uniprot
Match: A0A2V3J4B2_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J4B2_9FLOR) HSP 1 Score: 322 bits (826), Expect = 2.920e-104 Identity = 163/278 (58.63%), Postives = 202/278 (72.66%), Query Frame = 1
Query: 1 QVPNGILTTKQLRFMADKASKYDPSVGVLDITTRMNMQIRGVPLEDASDIINGIYDLGLTSLMSGMDNVRNMVGSPIAGIDPIEMVDTRQLCVEINDMVTAGRKGNPAVTHLPRKINFALSGGRDDFAHTMINDVGLQPHLHPATGEIGFNVVVGGLFSIKRVAESIPIDMWIRQGDVVNFLEAVLLAFRDLGPRKNRQQARIMYMMEEMGMEKFRETL-------VEYTRKIDPAFDPKPAAPAPPEPYARRDILGVHPQKQEGKSWVCVMTPAGRL 813
+VPNGIL+++QLRF A Y P G D+TTRMN+Q+RGV LE A+ I +G+Y LGLTS MSGMDNVRN+VGSP+AGIDP+EMVDTRQLC +INDM+T RKG P +T+LPRK N A+SG RDDFAHT IND+GL P HP T IGFNVV+GG FSIKR AE++P+D+W+ Q DVV F E VLL FRD G RKNRQ R+MYM++++GM+ FR+ + ++ K P +D +P RR++LGVHPQKQ G SWV PAGRL
Sbjct: 90 KVPNGILSSQQLRFFATCLRPYGPH-GCGDVTTRMNIQLRGVLLEHAAQICDGLYQLGLTSFMSGMDNVRNLVGSPLAGIDPLEMVDTRQLCHDINDMITDSRKGRPQLTNLPRKFNIAVSGSRDDFAHTHINDIGLVPMAHPQTAHIGFNVVIGGFFSIKRDAEALPMDVWLPQSDVVRFCETVLLWFRDHGDRKNRQATRLMYMVDQLGMKTFRDQIESAMGAPLQRAVKGGPEYD---------QPAERRNVLGVHPQKQPGLSWVAACVPAGRL 357
BLAST of mRNA_H-elongata_contig53436.12685.1 vs. uniprot
Match: R7QAL9_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QAL9_CHOCR) HSP 1 Score: 323 bits (828), Expect = 5.540e-104 Identity = 165/278 (59.35%), Postives = 205/278 (73.74%), Query Frame = 1
Query: 1 QVPNGILTTKQLRFMADKASKYDPSVGVLDITTRMNMQIRGVPLEDASDIINGIYDLGLTSLMSGMDNVRNMVGSPIAGIDPIEMVDTRQLCVEINDMVTAGRKGNPAVTHLPRKINFALSGGRDDFAHTMINDVGLQPHLHPATGEIGFNVVVGGLFSIKRVAESIPIDMWIRQGDVVNFLEAVLLAFRDLGPRKNRQQARIMYMMEEMGMEKFRETLVE-YTRKIDPAFD--PKPAAPAPPEPYARRDILGVHPQKQEGKSWVCVMTPAGRLTPQE 825
+VPNG+L Q+R+ A KY G DITTRMN+Q+RG+ LEDA DI +G+Y +GLTS MSGMDNVRNMVGSPIAGIDP E+VDTR+LC+ INDM+T R+GNPA+T+LPRK N +SG RDDFAHT INDVGL P +HP T E+GFNVV+GG FSIKR AE+IP+D+W+ DVV F E +L+ FRD G RKNR +R+MYM++++ M FRE + E + K A D + A PAP RR++LGVH QKQEG SWVC PAGRLT ++
Sbjct: 138 KVPNGLLDANQMRYFARVLEKYGDD-GCADITTRMNIQLRGIVLEDAGDICDGLYKIGLTSYMSGMDNVRNMVGSPIAGIDPEEIVDTRELCIAINDMITNNRRGNPALTNLPRKFNICVSGSRDDFAHTHINDVGLVPMVHPTTKEVGFNVVIGGFFSIKRNAEAIPMDVWLPYKDVVRFCETLLIWFRDNGDRKNRMSSRLMYMVDKLTMSGFREVIQEEFGSKFRRAVDGGEEYATPAP-----RRNVLGVHAQKQEGLSWVCGNVPAGRLTAED 409
BLAST of mRNA_H-elongata_contig53436.12685.1 vs. uniprot
Match: A0A6S9KFP9_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9KFP9_HETAK) HSP 1 Score: 321 bits (822), Expect = 3.540e-103 Identity = 162/279 (58.06%), Postives = 209/279 (74.91%), Query Frame = 1
Query: 1 QVPNGILTTKQLRFMADKASKYDPSVGVLDITTRMNMQIRGVPLEDASDIINGIYDLGLTSLMSGMDNVRNMVGSPIAGIDPIEMVDTRQLCVEINDMVTAGRKGNPAVTHLPRKINFALSGGRDDFAHTMINDVGLQPHLHPATGEIGFNVVVGGLFSIKRVAESIPIDMWIRQGDVVNFLEAVLLAFRDLGPR-KNRQQARIMYMMEEMGMEKFRETLVEYTRKIDPAFDPKPAAPAPPEPYARRDILGVHPQKQEGKSWVCVMTPAGRLTPQEVSL 834
+VPNGILT++QLR AD Y +GV+DITTR N+Q+RG+ LEDASDIIN + ++GLTSLMSGMDNVRNMVGSPIAGIDP EM+DTRQLC+++ M+T KG P T+LPRK+NFA+SG RDD+AHT INDVG QP + A G++GFNVVVGG FSIK ESIP++MW+ VV EA + FRD G R K+RQ+ R+M ++E+MG+E FR +V K+DPA + A P P + + +RD++G+H QKQEG SWV V+ PAGRL P++V +
Sbjct: 131 KVPNGILTSEQLRLFADTVEPYG-EIGVIDITTRQNIQMRGIVLEDASDIINNLNNIGLTSLMSGMDNVRNMVGSPIAGIDPHEMIDTRQLCIDMQKMITNDNKGRPEYTNLPRKMNFAISGSRDDYAHTSINDVGFQP-IANAEGKMGFNVVVGGYFSIKAAVESIPLNMWVPPEAVVPLSEAFIRYFRDNGQRVKDRQKTRMMILIEQMGVEAFRAGVVAELAKLDPAVETFEAVPEPEDVWEKRDLMGIHAQKQEGLSWVGVVVPAGRLFPEDVRM 407
BLAST of mRNA_H-elongata_contig53436.12685.1 vs. uniprot
Match: A0A7S0D8G4_9EUKA (Hypothetical protein n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0D8G4_9EUKA) HSP 1 Score: 314 bits (804), Expect = 2.140e-100 Identity = 155/284 (54.58%), Postives = 211/284 (74.30%), Query Frame = 1
Query: 1 QVPNGILTTKQLRFMADKASKYDPSVGVLDITTRMNMQIRGVPLEDASDIINGIYDLGLTSLMSGMDNVRNMVGSPIAGIDPIEMVDTRQLCVEINDMVTAGRKGNPAVTHLPRKINFALSGGRDDFAHTMINDVGLQPHLHPATGEIGFNVVVGGLFSIKRVAESIPIDMWIRQGDVVNFLEAVLLAFRDLGPRKNRQQARIMYMMEEMGMEKFRETLVEYTRKIDPAFDPKPAA--PAPPEPY-----ARRDILGVHPQKQEGKSWVCVMTPAGRLTPQEVS 831
+VPNG++T++Q+RF A KY VGV+DITTR N+Q+RG+ L+DA+DII+G+Y+ L+++ SGMDNVRN+VG+PIAG+DP EM+DTR LC INDM+T KGNPA+T+LPRK N A+SG RDDFAHT IND+GL P + TGE+GFNV+VGG FSIKRV ESIP+D+W++ D +F E +L FRD G R +RQ+AR+++++E+ G++KFR+T+ E D F K A + PEP+ A+RD+LGVH QKQ+G S+V V P GR+ P E +
Sbjct: 118 KVPNGVVTSEQMRFFAKSVGKYPVEVGVIDITTRQNIQLRGLELQDATDIIDGLYERDLSNVQSGMDNVRNLVGNPIAGLDPHEMIDTRPLCKSINDMITNSGKGNPAMTNLPRKFNIAVSGSRDDFAHTTINDIGLCPCPNKETGEMGFNVIVGGYFSIKRVMESIPMDLWVKPEDATDFCEVMLEVFRDNGDRGDRQKARLIWLIEKWGLDKFRDTVKE---AFDAKFPSKAGALISSQPEPWKGTTWAKRDLLGVHEQKQDGLSFVGVNVPVGRILPDEAN 398
BLAST of mRNA_H-elongata_contig53436.12685.1 vs. uniprot
Match: Q7XYQ0_BIGNA (Ferredoxin nitrite reductase n=1 Tax=Bigelowiella natans TaxID=227086 RepID=Q7XYQ0_BIGNA) HSP 1 Score: 305 bits (781), Expect = 2.830e-96 Identity = 153/288 (53.12%), Postives = 205/288 (71.18%), Query Frame = 1
Query: 1 QVPNGILTTKQLRFMADKASKYDPSVGVLDITTRMNMQIRGVPLEDASDIINGIYDLGLTSLMSGMDNVRNMVGSPIAGIDPIEMVDTRQLCVEINDMVTAGRKGNPAVTHLPRKINFALSGGRDDFAHTMINDVGLQPHLHPATGEIGFNVVVGGLFSIKRVAESIPIDMWIRQGDVVNFLEAVLLAFRDLGPRKNRQQARIMYMMEEMGMEKFRETLVEYTRKIDPAFDPKPAAPAPPEPYA-------------RRDILGVHPQKQEGKSWVCVMTPAGRLTPQE 825
+VPNG+LT+ +RF AD Y VGV+DITTR N+Q+RG+ L+D +++I+G+ GL+++ SGMDNVRN+VGSPIAGIDP E+VDTR + +I+ M+T KGNP + +LPRK N A+SG RDDFAHT IND+GL+P + +GE+GFNV+VGG FSIKRV ESIP+D+WI+ D F EAVLL FRD G R +RQ+AR+++++E+MGME FR+ + + ++ P A PA PEP+A +RDIL VH QKQEG SWV + PAGR+ P E
Sbjct: 170 KVPNGLLTSDHMRFFADTVGIYPADVGVIDITTRQNIQLRGIELQDMTELIDGLQMRGLSNVQSGMDNVRNLVGSPIAGIDPEELVDTRDIAKDIDAMITNDGKGNPKLANLPRKFNIAVSGSRDDFAHTSINDIGLRPCPNKESGEMGFNVIVGGYFSIKRVMESIPMDIWIKAEDAARFCEAVLLYFRDNGSRGDRQKARLIWLIEDMGMEGFRQAISDKYDEMFPKKKGGAAIPAQPEPWAVAAGTNTPTQPHKKRDILRVHSQKQEGLSWVGINVPAGRILPDE 457
BLAST of mRNA_H-elongata_contig53436.12685.1 vs. uniprot
Match: A0A1X6P1I5_PORUM (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6P1I5_PORUM) HSP 1 Score: 296 bits (759), Expect = 1.630e-93 Identity = 155/274 (56.57%), Postives = 195/274 (71.17%), Query Frame = 1
Query: 1 QVPNGILTTKQLRFMADKASKYDPSVGVLDITTRMNMQIRGVPLEDASDIINGIYDLGLTSLMSGMDNVRNMVGSPIAGIDPIEMVDTRQLCVEINDMVTAGRKGNPAVTHLPRKINFALSGGRDDFAHTMINDVGLQPHLHPATGEIGFNVVVGGLFSIKRVAESIPIDMWIRQGDVVNFLEAVLLAFRDLGPRKNRQQARIMYMMEEMGMEKFRETLVEYT--RKIDPAFDPKPAAPAPPEPYARRDILGVHPQKQEGKSWVCVMTPAGRLT 816
+VPNGILT+ QLRF+A + Y G DITTRMN+Q+RG+ EDA+ I +G+Y+ GLTS +GMD+VRNMVGSPIAGIDP EM+DTR+LC E+NDM+T RKGNP T+LPRK N +SG RDDFAHT IND+GL P ++ A G +GFNVVVGG+FSIKR AE++P+D W+ V F +A+L FRD G RK RQ+ R+MYM+++ G + R+ +VE+ PA P P P + RRDI GVH QKQEG SWV PAGRLT
Sbjct: 151 KVPNGILTSTQLRFLASCIAPYGED-GCADITTRMNIQLRGIVTEDAAAICDGLYENGLTSFQAGMDSVRNMVGSPIAGIDPHEMIDTRELCTELNDMITNFRKGNPEFTNLPRKFNICVSGSRDDFAHTHINDIGLVPMVN-ADGVVGFNVVVGGMFSIKRDAEAVPMDAWLTPAQVTPFCKALLEVFRDQGDRKIRQKTRLMYMIDQWGADGLRDRVVEHMGGTPFAPAVIPGPEYDTP---WPRRDIQGVHAQKQEGLSWVGCNVPAGRLT 419
BLAST of mRNA_H-elongata_contig53436.12685.1 vs. uniprot
Match: A0A8J5XYI8_DIALT (Uncharacterized protein n=2 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XYI8_DIALT) HSP 1 Score: 293 bits (749), Expect = 6.220e-92 Identity = 148/279 (53.05%), Postives = 195/279 (69.89%), Query Frame = 1
Query: 1 QVPNGILTTKQLRFMADKASKYDPSVGVLDITTRMNMQIRGVPLEDASDIINGIYDLGLTSLMSGMDNVRNMVGSPIAGIDPIEMVDTRQLCVEINDMVTAGRKGNPAVTHLPRKINFALSGGRDDFAHTMINDVGLQPHLHP-ATGEIGFNVVVGGLFSIKRVAESIPIDMWIRQGDVVNFLEAVLLAFRDLGPRKNRQQARIMYMMEEMGMEKFRETLVEYT--RKIDPAFDPKPAAPAPPEPYARRDILGVHPQKQEGKSWVCVMTPAGRLTPQEV 828
+VPNG++T Q R AD Y P +GV+DITTR N+Q+RG+ LEDAS + + + + GL S MSG+DNVRN+VGSPIAG+DP E+VDTR +C +IN +T +GNP +LPRK N A+SG RDDF+HT IND+GLQ +HP E GFN+V+GG FSIKRVAESIP+ W+ D F AVL FRD G R++RQ+ R+M+++EE G++ FR + E R +D + AAP P + ++RRD+LGVH Q+QEGKSWV V P GRL+ EV
Sbjct: 147 KVPNGVITAAQARVFADLVEPYGPKLGVVDITTRQNIQLRGITLEDASHVADALLECGLGSFMSGLDNVRNLVGSPIAGLDPHELVDTRPVCAQINSDITGAFRGNPEWANLPRKFNIAVSGSRDDFSHTTINDIGLQAAVHPDCPSEPGFNIVLGGYFSIKRVAESIPMGAWVSARDAPAFSLAVLEVFRDYGRREDRQKTRLMWLLEERGLDWFRAMVNEILARRGVDAL---RAAAPPPADAFSRRDLLGVHTQRQEGKSWVGVTVPVGRLSVGEV 422
BLAST of mRNA_H-elongata_contig53436.12685.1 vs. uniprot
Match: A0A7S2QSF0_9EUKA (Hypothetical protein n=1 Tax=Norrisiella sphaerica TaxID=552664 RepID=A0A7S2QSF0_9EUKA) HSP 1 Score: 295 bits (755), Expect = 6.790e-92 Identity = 148/282 (52.48%), Postives = 204/282 (72.34%), Query Frame = 1
Query: 1 QVPNGILTTKQLRFMADKASKYDPSVGVLDITTRMNMQIRGVPLEDASDIINGIYDLGLTSLMSGMDNVRNMVGSPIAGIDPIEMVDTRQLCVEINDMVTAGRKGNPAVTHLPRKINFALSGGRDDFAHTMINDVGLQPHLHPATGEIGFNVVVGGLFSIKRVAESIPIDMWIRQGDVVNFLEAVLLAFRDLGPRKNRQQARIMYMMEEMGMEKFRETLVEYTRKIDPAFDPKPAA--PAPPEPYA-----RRDILGVHPQKQEGKSWVCVMTPAGRLTPQE 825
+VPNG + + +RF AD Y VGV+DITTR N+Q+RG+ L+D +D+I+G+ + GL+++ SGMDNVRN+VGSPIAGIDP E++DT + EI++MVT KGNP + LPRK N A+SG RDDFAHT IND+GL+P + TGE+GFNV+VGG FSIKRV ESIP++MW++ D +F E +L+ FRD G R +RQ+AR+++++E+ GMEKFRE ++E + D F K A A PEP+A +RD++GV QKQ+G S++ V PAGR+ P E
Sbjct: 228 KVPNGYVNSDHMRFFADSVGIYPVEVGVIDITTRQNIQLRGLELQDMTDLIDGLAERGLSNVQSGMDNVRNLVGSPIAGIDPEELIDTWPIAKEIDNMVTNHGKGNPKLASLPRKFNIAVSGSRDDFAHTSINDIGLRPCPNKETGEMGFNVIVGGYFSIKRVMESIPMNMWVKPEDAADFCETMLMVFRDHGSRGDRQKARLIWLIEDWGMEKFREKIIE---EFDSMFPNKAGALLEAQPEPWAGTKHEKRDLMGVFAQKQDGLSFIGVNVPAGRILPDE 506
BLAST of mRNA_H-elongata_contig53436.12685.1 vs. uniprot
Match: A0A7S1TF51_9RHOD (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1TF51_9RHOD) HSP 1 Score: 290 bits (743), Expect = 2.010e-91 Identity = 143/272 (52.57%), Postives = 192/272 (70.59%), Query Frame = 1
Query: 1 QVPNGILTTKQLRFMADKASKYDPSVGVLDITTRMNMQIRGVPLEDASDIINGIYDLGLTSLMSGMDNVRNMVGSPIAGIDPIEMVDTRQLCVEINDMVTAGRKGNPAVTHLPRKINFALSGGRDDFAHTMINDVGLQPHLHPATGEIGFNVVVGGLFSIKRVAESIPIDMWIRQGDVVNFLEAVLLAFRDLGPRKNRQQARIMYMMEEMGMEKFRETLVEYTRKIDPAFDPKPAAPAPPEPYARRDILGVHPQKQEGKSWVCVMTPAGRLT 816
++PNGI+T++ +RF + KY + G +DITTR ++Q+RGV +ED DI + +++LG+TS M+GMDNVRN+VGSPIAGIDP E+ DTR+LC I+DM+T R GNP ++LPRK N +SG RDDFAHT IND+G P H TGEIGFNVVVGGLFSIKR S+P+++WI +VV F AVL FRD G R +RQ AR MY++++ G++ RE +++ + D A P E + RRD+LGVHPQKQEG W+ V P GR++
Sbjct: 123 KIPNGIVTSEMMRFFSQAVEKYGEA-GCIDITTRQSIQLRGVVIEDCPDIFDNLHELGITSFMTGMDNVRNLVGSPIAGIDPEELFDTRELCANISDMITNNRAGNPQFSNLPRKFNICVSGSRDDFAHTHINDLGFIPVPHRETGEIGFNVVVGGLFSIKRNEMSVPLNLWIHPSNVVEFCRAVLTVFRDHGARVSRQSARFMYLVDQWGVDTLRERVLQ---AMAVPVDSIEAQPESEEVFHRRDVLGVHPQKQEGLFWLGVNVPVGRMS 390 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig53436.12685.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig53436.12685.1 >prot_H-elongata_contig53436.12685.1 ID=prot_H-elongata_contig53436.12685.1|Name=mRNA_H-elongata_contig53436.12685.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=278bp QVPNGILTTKQLRFMADKASKYDPSVGVLDITTRMNMQIRGVPLEDASDIback to top mRNA from alignment at H-elongata_contig53436:809..3553+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig53436.12685.1 ID=mRNA_H-elongata_contig53436.12685.1|Name=mRNA_H-elongata_contig53436.12685.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2745bp|location=Sequence derived from alignment at H-elongata_contig53436:809..3553+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig53436:809..3553+ >mRNA_H-elongata_contig53436.12685.1 ID=mRNA_H-elongata_contig53436.12685.1|Name=mRNA_H-elongata_contig53436.12685.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1668bp|location=Sequence derived from alignment at H-elongata_contig53436:809..3553+ (Himanthalia elongata Himel1 dioecious)back to top |