mRNA_H-elongata_contig53407.12679.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig53407.12679.1
Unique NamemRNA_H-elongata_contig53407.12679.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig53407.12679.1 vs. uniprot
Match: D7G1I4_ECTSI (PHB domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1I4_ECTSI)

HSP 1 Score: 139 bits (349), Expect = 3.630e-37
Identity = 73/86 (84.88%), Postives = 78/86 (90.70%), Query Frame = 1
Query:    1 VEYLSLELITLQVKTVEAETVRGVRVTVMGTCQVKIDAFTQESLEQNLPQITLACQHFLGKSSQQVQDALLKTLEGHQRQILGTLT 258
            VE LSLELITL VK+VEAETVRGVRVTV GTCQVK+DAFTQ+ LEQNLPQITLACQHFLGK+  QV  ALL+TLEGHQRQILGTLT
Sbjct:   38 VEILSLELITLTVKSVEAETVRGVRVTVSGTCQVKVDAFTQQDLEQNLPQITLACQHFLGKTEDQVHQALLRTLEGHQRQILGTLT 123          
BLAST of mRNA_H-elongata_contig53407.12679.1 vs. uniprot
Match: D7G1I5_ECTSI (PHB domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1I5_ECTSI)

HSP 1 Score: 137 bits (344), Expect = 1.240e-36
Identity = 72/86 (83.72%), Postives = 77/86 (89.53%), Query Frame = 1
Query:    1 VEYLSLELITLQVKTVEAETVRGVRVTVMGTCQVKIDAFTQESLEQNLPQITLACQHFLGKSSQQVQDALLKTLEGHQRQILGTLT 258
            VE LSLELITL VK+VEAETVRGVRVTV GTCQVK+DAFT + L QNLPQITLACQHFLGK+S QV  ALL+TLEGHQRQILGTLT
Sbjct:   16 VEILSLELITLSVKSVEAETVRGVRVTVSGTCQVKVDAFTHDDLSQNLPQITLACQHFLGKTSDQVHQALLRTLEGHQRQILGTLT 101          
BLAST of mRNA_H-elongata_contig53407.12679.1 vs. uniprot
Match: A0A6H5K2E5_9PHAE (PHB domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2E5_9PHAE)

HSP 1 Score: 126 bits (316), Expect = 7.040e-35
Identity = 73/105 (69.52%), Postives = 77/105 (73.33%), Query Frame = 1
Query:    1 VEYLSLELITLQVKTVEAETVRGVRVTVMGTCQVKIDAFTQESLEQNLPQITLACQHFLGKSSQ-------------------QVQDALLKTLEGHQRQILGTLT 258
            VE LSLELITL VK+VEAETVRGVRVTV GTCQVK+DAFT + L QNLPQITLACQHFLGK SQ                   QV  ALL+TLEGHQRQILGTLT
Sbjct:   21 VEILSLELITLSVKSVEAETVRGVRVTVSGTCQVKVDAFTHDDLSQNLPQITLACQHFLGKVSQSFACSSIRWLVLSCFLTADQVHQALLRTLEGHQRQILGTLT 125          
BLAST of mRNA_H-elongata_contig53407.12679.1 vs. uniprot
Match: A0A835YT26_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YT26_9STRA)

HSP 1 Score: 95.1 bits (235), Expect = 5.470e-21
Identity = 52/90 (57.78%), Postives = 67/90 (74.44%), Query Frame = 1
Query:    1 VEYLSLELITLQVKTVEAETVRGVRVTVMGTCQVKIDAFT----QESLEQNLPQITLACQHFLGKSSQQVQDALLKTLEGHQRQILGTLT 258
            VE L L+L+TL+VK+ EAETVRGVRV+V   CQVK+DA+      E    N   ++LACQHFLG+S + ++ ++L TLEGHQRQILGTLT
Sbjct:    5 VETLDLDLLTLEVKSKEAETVRGVRVSVNSICQVKVDAYEPVEGHEERVLNKKAVSLACQHFLGRSKEDIKMSILSTLEGHQRQILGTLT 94          
BLAST of mRNA_H-elongata_contig53407.12679.1 vs. uniprot
Match: A0A7S2S6C3_9STRA (Hypothetical protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2S6C3_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 2.600e-16
Identity = 48/96 (50.00%), Postives = 63/96 (65.62%), Query Frame = 1
Query:    1 VEYLSLELITLQVKTVEAETVRGVRVTVMGTCQVKIDAFTQES----------LEQNLPQITLACQHFLGKSSQQVQDALLKTLEGHQRQILGTLT 258
            VE LSLEL+T+++++V+AET +GVRV V    QVK+ AF  +            E +   I LA QHFLG S   ++D+L +TLEGHQRQILGTLT
Sbjct:   38 VELLSLELMTIEIESVQAETAKGVRVNVRAVAQVKVKAFHLDDNGKRSENSGKAECDTGSIILAAQHFLGDSEDAIRDSLRRTLEGHQRQILGTLT 133          
BLAST of mRNA_H-elongata_contig53407.12679.1 vs. uniprot
Match: A0A7S1DX43_HEMAN (Hypothetical protein n=2 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1DX43_HEMAN)

HSP 1 Score: 79.3 bits (194), Expect = 2.550e-15
Identity = 45/101 (44.55%), Postives = 63/101 (62.38%), Query Frame = 1
Query:    7 YLSLELITLQVKTVEAETVRGVRVTVMGTCQVKIDAFTQESL-----------------EQNLPQITLACQHFLGKSSQQVQDALLKTLEGHQRQILGTLT 258
            YLSLEL+TL++K+ +AET++GVRV      Q+K+ A    +                  E + P ITLA  HFLG+S  +++ A+L+T+EGHQRQILGTLT
Sbjct:   86 YLSLELMTLEIKSHKAETIKGVRVNCGSVAQIKVKALMGSTTSGEGPAAQHGTVRVSNTEYDYPSITLASTHFLGESDDRIRQAILRTMEGHQRQILGTLT 186          
BLAST of mRNA_H-elongata_contig53407.12679.1 vs. uniprot
Match: F0XYF3_AURAN (PHB domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XYF3_AURAN)

HSP 1 Score: 77.8 bits (190), Expect = 8.100e-15
Identity = 41/88 (46.59%), Postives = 59/88 (67.05%), Query Frame = 1
Query:    1 VEYLSLELITLQVKTVEAETVRGVRVTVMGTCQVKIDA--FTQESLEQNLPQITLACQHFLGKSSQQVQDALLKTLEGHQRQILGTLT 258
            V  LSL+L+ L V +   ET  GV++ V   CQVK++A     + ++ N+ +I LA QHFLG+  + V+D+L  T+EGHQRQ+LGTLT
Sbjct:   38 VRILSLQLMQLDVSSTNVETGEGVKLNVRSVCQVKVEASKMINDKMQMNIDKIKLAAQHFLGEKLRAVKDSLTSTMEGHQRQVLGTLT 125          
BLAST of mRNA_H-elongata_contig53407.12679.1 vs. uniprot
Match: A0A7S4E4W7_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4E4W7_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 1.510e-14
Identity = 43/90 (47.78%), Postives = 61/90 (67.78%), Query Frame = 1
Query:    1 VEYLSLELITLQVKTVEAETVRGVRVTVMGTCQVKIDAF--TQESLEQNLPQ--ITLACQHFLGKSSQQVQDALLKTLEGHQRQILGTLT 258
            V+YL LEL+ L V + + ET  GV++ V    QVK+  F    E +E+ L +  + LACQHFLG+ ++ VQ++L  T+EGHQRQ+LGTLT
Sbjct:   38 VDYLDLELMQLNVSSRQVETGEGVKLNVDAVTQVKVACFPPNHEGMERMLDKGNLKLACQHFLGEKTKAVQESLTATMEGHQRQVLGTLT 127          
BLAST of mRNA_H-elongata_contig53407.12679.1 vs. uniprot
Match: A0A7R9SVU7_9CHLO (Flotillin-like n=1 Tax=Polyblepharides amylifera TaxID=1486889 RepID=A0A7R9SVU7_9CHLO)

HSP 1 Score: 76.3 bits (186), Expect = 2.900e-14
Identity = 36/83 (43.37%), Postives = 60/83 (72.29%), Query Frame = 1
Query:   10 LSLELITLQVKTVEAETVRGVRVTVMGTCQVKIDAFTQESLEQNLPQITLACQHFLGKSSQQVQDALLKTLEGHQRQILGTLT 258
            L+LE++TL +++  AE+ +GV++++    QVK+ A    S E ++  + LA  HF+GK+ + ++DA+ +TLEGHQRQI+GTLT
Sbjct:   41 LNLEIMTLILQSENAESAKGVKISITAVAQVKVTAMDASSGEVDINSVRLAASHFMGKTDEDIEDAIKRTLEGHQRQIIGTLT 123          
BLAST of mRNA_H-elongata_contig53407.12679.1 vs. uniprot
Match: A0A1X6PA14_PORUM (PHB domain-containing protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6PA14_PORUM)

HSP 1 Score: 75.9 bits (185), Expect = 4.100e-14
Identity = 43/89 (48.31%), Postives = 61/89 (68.54%), Query Frame = 1
Query:    1 VEYLSLELITLQVKTVEAETVRGVRVTVMGTCQVKIDAFTQES---LEQNLPQITLACQHFLGKSSQQVQDALLKTLEGHQRQILGTLT 258
            V+ LSLEL TL V++V A T++GVR+ V G  QVK+  +++     L  ++  I LA QHFLG S ++++ A+  +LEGHQR ILGTLT
Sbjct:   38 VDRLSLELRTLNVRSVNATTLQGVRICVEGIAQVKVSGYSESDTQVLTTDINAIRLAAQHFLGSSDKEIEVAICSSLEGHQRAILGTLT 126          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig53407.12679.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G1I4_ECTSI3.630e-3784.88PHB domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7G1I5_ECTSI1.240e-3683.72PHB domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5K2E5_9PHAE7.040e-3569.52PHB domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A835YT26_9STRA5.470e-2157.78Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2S6C3_9STRA2.600e-1650.00Hypothetical protein n=1 Tax=labyrinthulid quahog ... [more]
A0A7S1DX43_HEMAN2.550e-1544.55Hypothetical protein n=2 Tax=Hemiselmis andersenii... [more]
F0XYF3_AURAN8.100e-1546.59PHB domain-containing protein n=1 Tax=Aureococcus ... [more]
A0A7S4E4W7_9STRA1.510e-1447.78Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7R9SVU7_9CHLO2.900e-1443.37Flotillin-like n=1 Tax=Polyblepharides amylifera T... [more]
A0A1X6PA14_PORUM4.100e-1448.31PHB domain-containing protein n=1 Tax=Porphyra umb... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig53407contigH-elongata_contig53407:2972..3568 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score141.0
Seed ortholog evalue2.8e-31
Seed eggNOG ortholog2880.D7G1I4
Preferred nameFLOT2
KEGG koko:K07192
KEGG Pathwayko04910,map04910
GOsGO:0001666,GO:0001669,GO:0001765,GO:0001931,GO:0002020,GO:0002080,GO:0002252,GO:0002376,GO:0002682,GO:0002684,GO:0002694,GO:0002696,GO:0002791,GO:0002793,GO:0003674,GO:0005102,GO:0005198,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005773,GO:0005774,GO:0005886,GO:0005901,GO:0005911,GO:0005912,GO:0005913,GO:0006582,GO:0006725,GO:0006810,GO:0006897,GO:0006950,GO:0006952,GO:0006955,GO:0007155,GO:0007275,GO:0008104,GO:0008150,GO:0008152,GO:0008544,GO:0009506,GO:0009628,GO:0009877,GO:0009888,GO:0009892,GO:0009966,GO:0009967,GO:0009987,GO:0010324,GO:0010468,GO:0010470,GO:0010605,GO:0010629,GO:0010646,GO:0010647,GO:0012505,GO:0012506,GO:0016020,GO:0016043,GO:0016192,GO:0016323,GO:0016324,GO:0016600,GO:0018958,GO:0019222,GO:0019748,GO:0019899,GO:0022407,GO:0022409,GO:0022603,GO:0022607,GO:0022610,GO:0022622,GO:0023051,GO:0023056,GO:0030027,GO:0030054,GO:0030111,GO:0030139,GO:0030141,GO:0030155,GO:0030177,GO:0030659,GO:0030667,GO:0031090,GO:0031252,GO:0031254,GO:0031410,GO:0031579,GO:0031647,GO:0031982,GO:0032501,GO:0032502,GO:0032878,GO:0032879,GO:0032880,GO:0032991,GO:0033036,GO:0033554,GO:0034613,GO:0035006,GO:0035010,GO:0035011,GO:0035254,GO:0035255,GO:0035592,GO:0035593,GO:0036293,GO:0036294,GO:0042221,GO:0042440,GO:0042995,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044085,GO:0044091,GO:0044237,GO:0044291,GO:0044403,GO:0044419,GO:0044422,GO:0044424,GO:0044425,GO:0044433,GO:0044437,GO:0044444,GO:0044446,GO:0044459,GO:0044464,GO:0044853,GO:0044860,GO:0045087,GO:0045121,GO:0045177,GO:0045184,GO:0045595,GO:0045661,GO:0045785,GO:0045995,GO:0046982,GO:0046983,GO:0048364,GO:0048471,GO:0048518,GO:0048519,GO:0048522,GO:0048583,GO:0048584,GO:0048731,GO:0048856,GO:0050708,GO:0050714,GO:0050789,GO:0050793,GO:0050794,GO:0050821,GO:0050863,GO:0050865,GO:0050867,GO:0050870,GO:0050896,GO:0051046,GO:0051047,GO:0051049,GO:0051050,GO:0051171,GO:0051172,GO:0051179,GO:0051222,GO:0051223,GO:0051234,GO:0051239,GO:0051246,GO:0051248,GO:0051249,GO:0051251,GO:0051641,GO:0051704,GO:0051716,GO:0055044,GO:0060255,GO:0061024,GO:0061356,GO:0061357,GO:0065007,GO:0065008,GO:0070161,GO:0070201,GO:0070482,GO:0070727,GO:0070887,GO:0071453,GO:0071456,GO:0071692,GO:0071704,GO:0071709,GO:0071840,GO:0071944,GO:0072657,GO:0072659,GO:0080090,GO:0090087,GO:0097223,GO:0097708,GO:0098588,GO:0098589,GO:0098590,GO:0098657,GO:0098796,GO:0098797,GO:0098805,GO:0098857,GO:0099402,GO:0099503,GO:0120025,GO:1901360,GO:1901615,GO:1902991,GO:1902992,GO:1903037,GO:1903039,GO:1903044,GO:1903530,GO:1903532,GO:1903903,GO:1903905,GO:1904086,GO:1904951,GO:1905330,GO:1990778,GO:2000026,GO:2000047,GO:2000114
EggNOG free text desc.protein localization to membrane raft
EggNOG OGsCOG2268@1,KOG2668@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036,ko04131,ko04147
Hectar predicted targeting categoryother localisation
Exons2
Model size270
Cds size270
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930870.3859081-CDS-H-elongata_contig53407:2971..31541622930870.3859081-CDS-H-elongata_contig53407:2971..3154Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53407 2972..3154 +
1691679605.3493912-CDS-H-elongata_contig53407:2971..31541691679605.3493912-CDS-H-elongata_contig53407:2971..3154Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53407 2972..3154 +
1622930870.4057357-CDS-H-elongata_contig53407:3481..35681622930870.4057357-CDS-H-elongata_contig53407:3481..3568Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53407 3482..3568 +
1691679605.3632069-CDS-H-elongata_contig53407:3481..35681691679605.3632069-CDS-H-elongata_contig53407:3481..3568Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53407 3482..3568 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig53407.12679.1prot_H-elongata_contig53407.12679.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig53407 2972..3568 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig53407.12679.1

>prot_H-elongata_contig53407.12679.1 ID=prot_H-elongata_contig53407.12679.1|Name=mRNA_H-elongata_contig53407.12679.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=90bp
VEYLSLELITLQVKTVEAETVRGVRVTVMGTCQVKIDAFTQESLEQNLPQ
ITLACQHFLGKSSQQVQDALLKTLEGHQRQILGTLTGGS*
back to top

mRNA from alignment at H-elongata_contig53407:2972..3568+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig53407.12679.1 ID=mRNA_H-elongata_contig53407.12679.1|Name=mRNA_H-elongata_contig53407.12679.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=597bp|location=Sequence derived from alignment at H-elongata_contig53407:2972..3568+ (Himanthalia elongata Himel1 dioecious)
GTCGAATACCTGAGTCTGGAGCTCATCACCCTTCAAGTGAAAACCGTCGA GGCCGAGACCGTGCGAGGAGTTCGCGTGACGGTGATGGGGACATGCCAGG TCAAGATAGACGCCTTCACGCAGGAAAGCCTCGAACAGAACCTGCCACAG ATTACGCTGGCCTGCCAGCACTTCCTCGGAAAGGTATCAACCTATGAATA TGAACAGATAGTATTACAACAAATCTATTTTCATTAGGAATGTCGATTTG AGATCCCCCTGTATTCATTTTTTCATATCCTGCCATTCTTGTTCTACCAC CCTCCCTCCCATAGTTCCCACCACACGCGGACTATGAATCTAATTGGTCT AGGAAAGACCTGGGGAAAGTACTCGCAGCGCCTACTGACCCATGAAAAGC ACCCCTATTGAACACCGACTTGTTTGATGTTTTTAAGCCCTCATGCCTAC CTCGCTTCCCTTTCCGTTCTCCTTCCCACCGGCTACTGCGTGACATCACC GTGGTCTAAGTCATCTCAACAAGTCCAAGATGCGCTCCTGAAGACTCTCG AGGGACACCAAAGACAGATTCTCGGGACACTGACGGGTGGGTCATGA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig53407:2972..3568+

>mRNA_H-elongata_contig53407.12679.1 ID=mRNA_H-elongata_contig53407.12679.1|Name=mRNA_H-elongata_contig53407.12679.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=540bp|location=Sequence derived from alignment at H-elongata_contig53407:2972..3568+ (Himanthalia elongata Himel1 dioecious)
GTCGAATACCTGAGTCTGGAGCTCATCACCCTTCAAGTGAAAACCGTCGA
GGCCGAGACCGTGCGAGGAGTTCGCGTGACGGTGATGGGGACATGCCAGG
TCAAGATAGACGCCTTCACGCAGGAAAGCCTCGAACAGAACCTGCCACAG
ATTACGCTGGCCTGCCAGCACTTCCTCGGAAAGGTCGAATACCTGAGTCT
GGAGCTCATCACCCTTCAAGTGAAAACCGTCGAGGCCGAGACCGTGCGAG
GAGTTCGCGTGACGGTGATGGGGACATGCCAGGTCAAGATAGACGCCTTC
ACGCAGGAAAGCCTCGAACAGAACCTGCCACAGATTACGCTGGCCTGCCA
GCACTTCCTCGGAAAGTCATCTCAACAAGTCCAAGATGCGCTCCTGAAGA
CTCTCGAGGGACACCAAAGACAGATTCTCGGGACACTGACGGGTGGGTCA
TGATCATCTCAACAAGTCCAAGATGCGCTCCTGAAGACTCTCGAGGGACA
CCAAAGACAGATTCTCGGGACACTGACGGGTGGGTCATGA
back to top