mRNA_H-elongata_contig53407.12679.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig53407.12679.1 vs. uniprot
Match: D7G1I4_ECTSI (PHB domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1I4_ECTSI) HSP 1 Score: 139 bits (349), Expect = 3.630e-37 Identity = 73/86 (84.88%), Postives = 78/86 (90.70%), Query Frame = 1
Query: 1 VEYLSLELITLQVKTVEAETVRGVRVTVMGTCQVKIDAFTQESLEQNLPQITLACQHFLGKSSQQVQDALLKTLEGHQRQILGTLT 258
VE LSLELITL VK+VEAETVRGVRVTV GTCQVK+DAFTQ+ LEQNLPQITLACQHFLGK+ QV ALL+TLEGHQRQILGTLT
Sbjct: 38 VEILSLELITLTVKSVEAETVRGVRVTVSGTCQVKVDAFTQQDLEQNLPQITLACQHFLGKTEDQVHQALLRTLEGHQRQILGTLT 123
BLAST of mRNA_H-elongata_contig53407.12679.1 vs. uniprot
Match: D7G1I5_ECTSI (PHB domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1I5_ECTSI) HSP 1 Score: 137 bits (344), Expect = 1.240e-36 Identity = 72/86 (83.72%), Postives = 77/86 (89.53%), Query Frame = 1
Query: 1 VEYLSLELITLQVKTVEAETVRGVRVTVMGTCQVKIDAFTQESLEQNLPQITLACQHFLGKSSQQVQDALLKTLEGHQRQILGTLT 258
VE LSLELITL VK+VEAETVRGVRVTV GTCQVK+DAFT + L QNLPQITLACQHFLGK+S QV ALL+TLEGHQRQILGTLT
Sbjct: 16 VEILSLELITLSVKSVEAETVRGVRVTVSGTCQVKVDAFTHDDLSQNLPQITLACQHFLGKTSDQVHQALLRTLEGHQRQILGTLT 101
BLAST of mRNA_H-elongata_contig53407.12679.1 vs. uniprot
Match: A0A6H5K2E5_9PHAE (PHB domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2E5_9PHAE) HSP 1 Score: 126 bits (316), Expect = 7.040e-35 Identity = 73/105 (69.52%), Postives = 77/105 (73.33%), Query Frame = 1
Query: 1 VEYLSLELITLQVKTVEAETVRGVRVTVMGTCQVKIDAFTQESLEQNLPQITLACQHFLGKSSQ-------------------QVQDALLKTLEGHQRQILGTLT 258
VE LSLELITL VK+VEAETVRGVRVTV GTCQVK+DAFT + L QNLPQITLACQHFLGK SQ QV ALL+TLEGHQRQILGTLT
Sbjct: 21 VEILSLELITLSVKSVEAETVRGVRVTVSGTCQVKVDAFTHDDLSQNLPQITLACQHFLGKVSQSFACSSIRWLVLSCFLTADQVHQALLRTLEGHQRQILGTLT 125
BLAST of mRNA_H-elongata_contig53407.12679.1 vs. uniprot
Match: A0A835YT26_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YT26_9STRA) HSP 1 Score: 95.1 bits (235), Expect = 5.470e-21 Identity = 52/90 (57.78%), Postives = 67/90 (74.44%), Query Frame = 1
Query: 1 VEYLSLELITLQVKTVEAETVRGVRVTVMGTCQVKIDAFT----QESLEQNLPQITLACQHFLGKSSQQVQDALLKTLEGHQRQILGTLT 258
VE L L+L+TL+VK+ EAETVRGVRV+V CQVK+DA+ E N ++LACQHFLG+S + ++ ++L TLEGHQRQILGTLT
Sbjct: 5 VETLDLDLLTLEVKSKEAETVRGVRVSVNSICQVKVDAYEPVEGHEERVLNKKAVSLACQHFLGRSKEDIKMSILSTLEGHQRQILGTLT 94
BLAST of mRNA_H-elongata_contig53407.12679.1 vs. uniprot
Match: A0A7S2S6C3_9STRA (Hypothetical protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2S6C3_9STRA) HSP 1 Score: 82.0 bits (201), Expect = 2.600e-16 Identity = 48/96 (50.00%), Postives = 63/96 (65.62%), Query Frame = 1
Query: 1 VEYLSLELITLQVKTVEAETVRGVRVTVMGTCQVKIDAFTQES----------LEQNLPQITLACQHFLGKSSQQVQDALLKTLEGHQRQILGTLT 258
VE LSLEL+T+++++V+AET +GVRV V QVK+ AF + E + I LA QHFLG S ++D+L +TLEGHQRQILGTLT
Sbjct: 38 VELLSLELMTIEIESVQAETAKGVRVNVRAVAQVKVKAFHLDDNGKRSENSGKAECDTGSIILAAQHFLGDSEDAIRDSLRRTLEGHQRQILGTLT 133
BLAST of mRNA_H-elongata_contig53407.12679.1 vs. uniprot
Match: A0A7S1DX43_HEMAN (Hypothetical protein n=2 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1DX43_HEMAN) HSP 1 Score: 79.3 bits (194), Expect = 2.550e-15 Identity = 45/101 (44.55%), Postives = 63/101 (62.38%), Query Frame = 1
Query: 7 YLSLELITLQVKTVEAETVRGVRVTVMGTCQVKIDAFTQESL-----------------EQNLPQITLACQHFLGKSSQQVQDALLKTLEGHQRQILGTLT 258
YLSLEL+TL++K+ +AET++GVRV Q+K+ A + E + P ITLA HFLG+S +++ A+L+T+EGHQRQILGTLT
Sbjct: 86 YLSLELMTLEIKSHKAETIKGVRVNCGSVAQIKVKALMGSTTSGEGPAAQHGTVRVSNTEYDYPSITLASTHFLGESDDRIRQAILRTMEGHQRQILGTLT 186
BLAST of mRNA_H-elongata_contig53407.12679.1 vs. uniprot
Match: F0XYF3_AURAN (PHB domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XYF3_AURAN) HSP 1 Score: 77.8 bits (190), Expect = 8.100e-15 Identity = 41/88 (46.59%), Postives = 59/88 (67.05%), Query Frame = 1
Query: 1 VEYLSLELITLQVKTVEAETVRGVRVTVMGTCQVKIDA--FTQESLEQNLPQITLACQHFLGKSSQQVQDALLKTLEGHQRQILGTLT 258
V LSL+L+ L V + ET GV++ V CQVK++A + ++ N+ +I LA QHFLG+ + V+D+L T+EGHQRQ+LGTLT
Sbjct: 38 VRILSLQLMQLDVSSTNVETGEGVKLNVRSVCQVKVEASKMINDKMQMNIDKIKLAAQHFLGEKLRAVKDSLTSTMEGHQRQVLGTLT 125
BLAST of mRNA_H-elongata_contig53407.12679.1 vs. uniprot
Match: A0A7S4E4W7_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4E4W7_9STRA) HSP 1 Score: 74.7 bits (182), Expect = 1.510e-14 Identity = 43/90 (47.78%), Postives = 61/90 (67.78%), Query Frame = 1
Query: 1 VEYLSLELITLQVKTVEAETVRGVRVTVMGTCQVKIDAF--TQESLEQNLPQ--ITLACQHFLGKSSQQVQDALLKTLEGHQRQILGTLT 258
V+YL LEL+ L V + + ET GV++ V QVK+ F E +E+ L + + LACQHFLG+ ++ VQ++L T+EGHQRQ+LGTLT
Sbjct: 38 VDYLDLELMQLNVSSRQVETGEGVKLNVDAVTQVKVACFPPNHEGMERMLDKGNLKLACQHFLGEKTKAVQESLTATMEGHQRQVLGTLT 127
BLAST of mRNA_H-elongata_contig53407.12679.1 vs. uniprot
Match: A0A7R9SVU7_9CHLO (Flotillin-like n=1 Tax=Polyblepharides amylifera TaxID=1486889 RepID=A0A7R9SVU7_9CHLO) HSP 1 Score: 76.3 bits (186), Expect = 2.900e-14 Identity = 36/83 (43.37%), Postives = 60/83 (72.29%), Query Frame = 1
Query: 10 LSLELITLQVKTVEAETVRGVRVTVMGTCQVKIDAFTQESLEQNLPQITLACQHFLGKSSQQVQDALLKTLEGHQRQILGTLT 258
L+LE++TL +++ AE+ +GV++++ QVK+ A S E ++ + LA HF+GK+ + ++DA+ +TLEGHQRQI+GTLT
Sbjct: 41 LNLEIMTLILQSENAESAKGVKISITAVAQVKVTAMDASSGEVDINSVRLAASHFMGKTDEDIEDAIKRTLEGHQRQIIGTLT 123
BLAST of mRNA_H-elongata_contig53407.12679.1 vs. uniprot
Match: A0A1X6PA14_PORUM (PHB domain-containing protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6PA14_PORUM) HSP 1 Score: 75.9 bits (185), Expect = 4.100e-14 Identity = 43/89 (48.31%), Postives = 61/89 (68.54%), Query Frame = 1
Query: 1 VEYLSLELITLQVKTVEAETVRGVRVTVMGTCQVKIDAFTQES---LEQNLPQITLACQHFLGKSSQQVQDALLKTLEGHQRQILGTLT 258
V+ LSLEL TL V++V A T++GVR+ V G QVK+ +++ L ++ I LA QHFLG S ++++ A+ +LEGHQR ILGTLT
Sbjct: 38 VDRLSLELRTLNVRSVNATTLQGVRICVEGIAQVKVSGYSESDTQVLTTDINAIRLAAQHFLGSSDKEIEVAICSSLEGHQRAILGTLT 126 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig53407.12679.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig53407.12679.1 >prot_H-elongata_contig53407.12679.1 ID=prot_H-elongata_contig53407.12679.1|Name=mRNA_H-elongata_contig53407.12679.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=90bp VEYLSLELITLQVKTVEAETVRGVRVTVMGTCQVKIDAFTQESLEQNLPQback to top mRNA from alignment at H-elongata_contig53407:2972..3568+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig53407.12679.1 ID=mRNA_H-elongata_contig53407.12679.1|Name=mRNA_H-elongata_contig53407.12679.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=597bp|location=Sequence derived from alignment at H-elongata_contig53407:2972..3568+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig53407:2972..3568+ >mRNA_H-elongata_contig53407.12679.1 ID=mRNA_H-elongata_contig53407.12679.1|Name=mRNA_H-elongata_contig53407.12679.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=540bp|location=Sequence derived from alignment at H-elongata_contig53407:2972..3568+ (Himanthalia elongata Himel1 dioecious)back to top |