mRNA_H-elongata_contig53331.12674.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig53331.12674.1
Unique NamemRNA_H-elongata_contig53331.12674.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig53331.12674.1 vs. uniprot
Match: UPI000B9380F6 (uncharacterized protein LOC111028171 n=1 Tax=Myzus persicae TaxID=13164 RepID=UPI000B9380F6)

HSP 1 Score: 73.2 bits (178), Expect = 6.320e-14
Identity = 40/105 (38.10%), Postives = 64/105 (60.95%), Query Frame = 1
Query:    1 PPRKKPKAAMTSS--QIITEWGLHKDDIVSESDLNYPGNPLGWWARATRVYPHVATLAQKYLTFQASYAVSERVFSVGGIVVTKKRNRLSGDRIEDIAFLHESMK 309
            PP KK ++ M +S  +   E  LHK   ++ + +++  +PL WW    R+YP V+ +A KYL+  A+    ER+FS  G ++TK+RNRLS DR+  + FL+  +K
Sbjct:   48 PPTKKIRSLMANSDEENEDEDELHKYKSMT-AKISHNQDPLLWWKYNERIYPAVSQMANKYLSEVATSVPCERLFSEAGQIITKRRNRLSPDRVNQLLFLNSYLK 151          
BLAST of mRNA_H-elongata_contig53331.12674.1 vs. uniprot
Match: UPI000C760D92 (zinc finger BED domain-containing protein 4-like n=2 Tax=Anoplophora glabripennis TaxID=217634 RepID=UPI000C760D92)

HSP 1 Score: 70.9 bits (172), Expect = 2.200e-12
Identity = 33/95 (34.74%), Postives = 57/95 (60.00%), Query Frame = 1
Query:   13 KPKAAMTSSQIITEWGLHKDDIVSESDLNYPGNPLGWWARATRVYPHVATLAQKYLTFQASYAVSERVFSVGGIVVTKKRNRLSGDRIEDIAFLH 297
            KPK   TS  ++      ++D++  +D     NPL WW      YP+++ +AQ+ L+  A+    ER+FS  G+V++ +RNRLSG++++ I FL+
Sbjct:  188 KPKGTATSRALMEVQRYMEEDLLPRND-----NPLDWWREHKYSYPYLSIVAQEKLSIVATSVPCERIFSKAGLVISDRRNRLSGNKVDKILFLN 277          
BLAST of mRNA_H-elongata_contig53331.12674.1 vs. uniprot
Match: A0A672JL57_SALFA (BED-type domain-containing protein n=5 Tax=Salarias fasciatus TaxID=181472 RepID=A0A672JL57_SALFA)

HSP 1 Score: 70.5 bits (171), Expect = 6.330e-12
Identity = 35/122 (28.69%), Postives = 65/122 (53.28%), Query Frame = 1
Query:    1 PPRKKPKAAMTSSQII-TEWGLHKDDIVSESD----------------LNYPGNPLGWWARATRVYPHVATLAQKYLTFQASYAVSERVFSVGGIVVTKKRNRLSGDRIEDIAFLHESMKHD 315
            PP K+P+A+   + ++ + +   K+D  ++SD                L   G+PL WW      YPH++T+A+++L    +   +ERVFS  G +VT KR+ L  + ++ + FL +++K +
Sbjct:  467 PPVKRPRASCALADLLGSTFPTQKNDTETKSDQEAAEDEVKMFRMESPLPLNGDPLNWWMEHEGAYPHISTVARRFLCVPGTSVSAERVFSTAGDIVTAKRSVLKAEHVDQLVFLQKNLKRN 588          
BLAST of mRNA_H-elongata_contig53331.12674.1 vs. uniprot
Match: UPI00077D09EE (zinc finger BED domain-containing protein 1-like n=1 Tax=Nothobranchius furzeri TaxID=105023 RepID=UPI00077D09EE)

HSP 1 Score: 68.9 bits (167), Expect = 6.340e-12
Identity = 36/95 (37.89%), Postives = 55/95 (57.89%), Query Frame = 1
Query:   37 SQIITEWGLHKDDIVSESDLNYPG--------NPLGWWARATRVYPHVATLAQKYLTFQASYAVSERVFSVGGIVVTKKRNRLSGDRIEDIAFLH 297
            ++ I + G  +++ V +  L Y G        +PL WW      +P +ATLA+ YL   A++A SER+FSV G +VTKKR  L+ + +E + FLH
Sbjct:  131 NENIDQGGDGENETVRKEVLLYFGEAPIPRDNDPLTWWKNNATRFPTLATLAKSYLAVPATWAPSERLFSVAGNIVTKKRASLTAEHVETLTFLH 225          
BLAST of mRNA_H-elongata_contig53331.12674.1 vs. uniprot
Match: A0A8H5CSX0_9AGAR (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Tetrapyrgos nigripes TaxID=182062 RepID=A0A8H5CSX0_9AGAR)

HSP 1 Score: 68.9 bits (167), Expect = 2.200e-11
Identity = 32/66 (48.48%), Postives = 42/66 (63.64%), Query Frame = 1
Query:  121 WWARATRVYPHVATLAQKYLTFQASYAVSERVFSVGGIVVTKKRNRLSGDRIEDIAFLHESMKHDL 318
            WW   T +YP  ++LA+ YL    S   SER FS GG+V+TK+RNRL  D +E + FL   +KHDL
Sbjct:  532 WWGMRTAMYPTWSSLARDYLAIMGSSVSSERAFSGGGLVITKRRNRLKSDIVEALQFLKCLIKHDL 597          
BLAST of mRNA_H-elongata_contig53331.12674.1 vs. uniprot
Match: E2BLX1_HARSA (Zinc finger BED domain-containing protein 1 (Fragment) n=2 Tax=Harpegnathos saltator TaxID=610380 RepID=E2BLX1_HARSA)

HSP 1 Score: 63.2 bits (152), Expect = 4.370e-11
Identity = 29/66 (43.94%), Postives = 39/66 (59.09%), Query Frame = 1
Query:  109 NPLGWWARATRVYPHVATLAQKYLTFQASYAVSERVFSVGGIVVTKKRNRLSGDRIEDIAFLHESM 306
            +PL WW      +P +A LA+ YL   A+   SERVFSVGG +VT KR  L  D +  I F H+++
Sbjct:    1 DPLMWWKANASQFPTLAPLARHYLNIAATETSSERVFSVGGNIVTNKRTNLLADNVRQIIFCHDNL 66          
BLAST of mRNA_H-elongata_contig53331.12674.1 vs. uniprot
Match: R7UJ35_CAPTE (Dimer_Tnp_hAT domain-containing protein (Fragment) n=1 Tax=Capitella teleta TaxID=283909 RepID=R7UJ35_CAPTE)

HSP 1 Score: 62.4 bits (150), Expect = 8.340e-11
Identity = 27/66 (40.91%), Postives = 41/66 (62.12%), Query Frame = 1
Query:  109 NPLGWWARATRVYPHVATLAQKYLTFQASYAVSERVFSVGGIVVTKKRNRLSGDRIEDIAFLHESM 306
            +PL WWA     YP VA +A+  L   AS   +ER+FS+GG +VT KR +L+   ++ + FL ++M
Sbjct:    3 DPLKWWAAKEAAYPSVAVIARHILAVPASSVPAERIFSLGGNIVTNKRTKLTSSNVDSLIFLAKNM 68          
BLAST of mRNA_H-elongata_contig53331.12674.1 vs. uniprot
Match: UPI001E1DA5D0 (E3 SUMO-protein ligase ZBED1-like isoform X1 n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1DA5D0)

HSP 1 Score: 66.6 bits (161), Expect = 1.350e-10
Identity = 39/99 (39.39%), Postives = 54/99 (54.55%), Query Frame = 1
Query:   10 KKPKAAMTSSQIITEWGLHKDDIVSESDLNYPGNPLGWWARATRVYPHVATLAQKYLTFQASYAVSERVFSVGGIVVTKKRNRLSGDRIEDIAFLHESM 306
            K P +A+   +I      ++D   S+  L      L WW +   VYP +A LA+KYL   AS   SERVFS+ G +V KKR+RL+ D I  + FL  +M
Sbjct:  343 KTPVSAVIEQEIERYLASNRDADDSKLSL------LQWWEKNQYVYPRLAVLAKKYLAIPASSVPSERVFSLAGSLVNKKRSRLNPDLINKLIFLKMNM 435          
BLAST of mRNA_H-elongata_contig53331.12674.1 vs. uniprot
Match: X1XCT7_ACYPI (Dimer_Tnp_hAT domain-containing protein n=3 Tax=Acyrthosiphon pisum TaxID=7029 RepID=X1XCT7_ACYPI)

HSP 1 Score: 65.9 bits (159), Expect = 1.370e-10
Identity = 37/113 (32.74%), Postives = 59/113 (52.21%), Query Frame = 1
Query:    1 PPRKKPKAAMTSSQIITE--WGLHKDDIVSESD--------LNYPGNPLGWWARATRVYPHVATLAQKYLTFQASYAVSERVFSVGGIVVTKKRNRLSGDRIEDIAFLHESMK 309
            PPRKK ++ M  S    E  + + +   + + +        + Y  +PL WW      Y  V+ LA+KYL+  A+    ER+FS  G +++KKRNRLS +R+  + FL+   K
Sbjct:  136 PPRKKLRSLMIDSDDDDEDDYSITQSPTMKQLEEYKNLKIKVPYDQDPLNWWKENESKYSAVSLLAKKYLSIVATSVPCERLFSEAGTIISKKRNRLSPERLNQLLFLNSYFK 248          
BLAST of mRNA_H-elongata_contig53331.12674.1 vs. uniprot
Match: UPI001E1DEB19 (E3 SUMO-protein ligase ZBED1-like n=2 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1DEB19)

HSP 1 Score: 66.6 bits (161), Expect = 1.430e-10
Identity = 39/99 (39.39%), Postives = 54/99 (54.55%), Query Frame = 1
Query:   10 KKPKAAMTSSQIITEWGLHKDDIVSESDLNYPGNPLGWWARATRVYPHVATLAQKYLTFQASYAVSERVFSVGGIVVTKKRNRLSGDRIEDIAFLHESM 306
            K P +A+   +I      ++D   S+  L      L WW +   VYP +A LA+KYL   AS   SERVFS+ G +V KKR+RL+ D I  + FL  +M
Sbjct:  582 KTPVSAVIEQEIERYLASNRDADDSKLSL------LQWWEKNQYVYPRLAVLAKKYLAIPASSVPSERVFSLAGSLVNKKRSRLNPDLINKLIFLKMNM 674          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig53331.12674.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI000B9380F66.320e-1438.10uncharacterized protein LOC111028171 n=1 Tax=Myzus... [more]
UPI000C760D922.200e-1234.74zinc finger BED domain-containing protein 4-like n... [more]
A0A672JL57_SALFA6.330e-1228.69BED-type domain-containing protein n=5 Tax=Salaria... [more]
UPI00077D09EE6.340e-1237.89zinc finger BED domain-containing protein 1-like n... [more]
A0A8H5CSX0_9AGAR2.200e-1148.48Dimer_Tnp_hAT domain-containing protein n=1 Tax=Te... [more]
E2BLX1_HARSA4.370e-1143.94Zinc finger BED domain-containing protein 1 (Fragm... [more]
R7UJ35_CAPTE8.340e-1140.91Dimer_Tnp_hAT domain-containing protein (Fragment)... [more]
UPI001E1DA5D01.350e-1039.39E3 SUMO-protein ligase ZBED1-like isoform X1 n=1 T... [more]
X1XCT7_ACYPI1.370e-1032.74Dimer_Tnp_hAT domain-containing protein n=3 Tax=Ac... [more]
UPI001E1DEB191.430e-1039.39E3 SUMO-protein ligase ZBED1-like n=2 Tax=Mercenar... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig53331contigH-elongata_contig53331:2784..3104 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score66.2
Seed ortholog evalue9.5e-09
Seed eggNOG ortholog7029.ACYPI42913-PA
Preferred nameZBED1
EggNOG free text desc.Zinc finger, BED-type containing 1
EggNOG OGs39X45@33154,3BJIV@33208,3E423@33213,KOG1121@1,KOG1121@2759
COG Functional cat.L
Best tax levelBilateria
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size321
Cds size294
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930870.0146103-UTR-H-elongata_contig53331:2783..28101622930870.0146103-UTR-H-elongata_contig53331:2783..2810Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig53331 2784..2810 +
1691679605.1937568-UTR-H-elongata_contig53331:2783..28101691679605.1937568-UTR-H-elongata_contig53331:2783..2810Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig53331 2784..2810 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930870.027837-CDS-H-elongata_contig53331:2810..31041622930870.027837-CDS-H-elongata_contig53331:2810..3104Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53331 2811..3104 +
1691679605.2043977-CDS-H-elongata_contig53331:2810..31041691679605.2043977-CDS-H-elongata_contig53331:2810..3104Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53331 2811..3104 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig53331.12674.1prot_H-elongata_contig53331.12674.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig53331 2811..3104 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig53331.12674.1

>prot_H-elongata_contig53331.12674.1 ID=prot_H-elongata_contig53331.12674.1|Name=mRNA_H-elongata_contig53331.12674.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=98bp
MTSSQIITEWGLHKDDIVSESDLNYPGNPLGWWARATRVYPHVATLAQKY
LTFQASYAVSERVFSVGGIVVTKKRNRLSGDRIEDIAFLHESMKHDL*
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mRNA from alignment at H-elongata_contig53331:2784..3104+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig53331.12674.1 ID=mRNA_H-elongata_contig53331.12674.1|Name=mRNA_H-elongata_contig53331.12674.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=321bp|location=Sequence derived from alignment at H-elongata_contig53331:2784..3104+ (Himanthalia elongata Himel1 dioecious)
CCTCCGAGGAAGAAGCCGAAAGCGGCTATGACAAGTTCCCAGATCATCAC GGAATGGGGGCTACATAAAGACGACATTGTGTCAGAGAGCGACTTAAATT ACCCAGGCAACCCTCTAGGGTGGTGGGCAAGGGCGACCCGAGTGTATCCC CATGTGGCCACGCTCGCTCAAAAGTATCTTACTTTTCAAGCTTCATATGC TGTGTCGGAACGAGTTTTCTCTGTAGGCGGAATCGTAGTCACAAAGAAGC GAAATCGTTTGTCCGGAGATCGGATAGAAGACATCGCTTTCCTTCACGAG AGCATGAAGCACGACCTCTAG
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Coding sequence (CDS) from alignment at H-elongata_contig53331:2784..3104+

>mRNA_H-elongata_contig53331.12674.1 ID=mRNA_H-elongata_contig53331.12674.1|Name=mRNA_H-elongata_contig53331.12674.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=588bp|location=Sequence derived from alignment at H-elongata_contig53331:2784..3104+ (Himanthalia elongata Himel1 dioecious)
ATGACAAGTTCCCAGATCATCACGGAATGGGGGCTACATAAAGACGACAT
TGTGTCAGAGAGCGACTTAAATTACCCAGGCAACCCTCTAGGGTGGTGGG
CAAGGGCGACCCGAGTGTATCCCCATGTGGCCACGCTCGCTCAAAAGTAT
CTTACTTTTCAAGCTTCATATGCTGTGTCGGAACGAGTTTTCTCTGTAGG
CGGAATCGTAGTCACAAAGAAGCGAAATCGTTTGTCCGGAGATCGGATAG
AAGACATCGCTTTCCTTCACGAGAGCATGAAGCACGACCTCTAGATGACA
AGTTCCCAGATCATCACGGAATGGGGGCTACATAAAGACGACATTGTGTC
AGAGAGCGACTTAAATTACCCAGGCAACCCTCTAGGGTGGTGGGCAAGGG
CGACCCGAGTGTATCCCCATGTGGCCACGCTCGCTCAAAAGTATCTTACT
TTTCAAGCTTCATATGCTGTGTCGGAACGAGTTTTCTCTGTAGGCGGAAT
CGTAGTCACAAAGAAGCGAAATCGTTTGTCCGGAGATCGGATAGAAGACA
TCGCTTTCCTTCACGAGAGCATGAAGCACGACCTCTAG
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