mRNA_H-elongata_contig53077.12635.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig53077.12635.1
Unique NamemRNA_H-elongata_contig53077.12635.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig53077.12635.1 vs. uniprot
Match: D7FVV1_ECTSI (Carboxyvinyl-carboxyphosphonate phosphorylmutase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVV1_ECTSI)

HSP 1 Score: 437 bits (1125), Expect = 1.040e-152
Identity = 217/246 (88.21%), Postives = 234/246 (95.12%), Query Frame = 1
Query:    1 MTGFGVSGAHGLPDTQLLSYAEMLASATNICSTLRRIPCIGDGDTGYGNAVNVKRTVKGYAQVGMAGIMIEDQVAPKRCGHTRGKSVVGREEAYSRVRAACDARDEGTDIVVMARTDARGVLGIEEALERCREFRRIGADITFLEAPQSEEEMRRYCKEVDGPKLANMLEFGKTPILPPAQLQAMGYKIAAYPLSLLSASIKAMNTVLSRLKAEEPLDDLLEGFEDVQRVVGFVDYDNTAAEYKLD 738
            MTGFGVSGAHGLPDTQLLSYAEMLASATNIC+TLR IPCIGDGDTGYGN+VNVKRTVKGYAQVGMAGIMIEDQVAPKRCGHT+GK+VVGREEAYSRVRAACDARDEG DI++MARTDAR  LG+EEALERC+EFR+IGADITFLEAPQSEEEMRRYC+EVDGPKLANMLEFGKTPILPP +L+ MGY IAAYPLSLLSASIKAMN+ L RLKA EPLDDLLEGFE+VQRVVGF DYD+TA +YK+D
Sbjct:  106 MTGFGVSGAHGLPDTQLLSYAEMLASATNICATLRDIPCIGDGDTGYGNSVNVKRTVKGYAQVGMAGIMIEDQVAPKRCGHTKGKTVVGREEAYSRVRAACDARDEGADILIMARTDARAGLGLEEALERCKEFRKIGADITFLEAPQSEEEMRRYCQEVDGPKLANMLEFGKTPILPPVELEKMGYAIAAYPLSLLSASIKAMNSTLERLKAGEPLDDLLEGFEEVQRVVGFRDYDSTAEKYKID 351          
BLAST of mRNA_H-elongata_contig53077.12635.1 vs. uniprot
Match: A0A835ZB25_9STRA (Carboxyvinyl-carboxyphosphonate phosphorylmutase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZB25_9STRA)

HSP 1 Score: 337 bits (863), Expect = 4.470e-113
Identity = 169/236 (71.61%), Postives = 196/236 (83.05%), Query Frame = 1
Query:    1 MTGFGVSGAHGLPDTQLLSYAEMLASATNICSTLRRIPCIGDGDTGYGNAVNVKRTVKGYAQVGMAGIMIEDQVAPKRCGHTRGKSVVGREEAYSRVRAACDARDEGTDIVVMARTDARGVLGIEEALERCREFRRIGADITFLEAPQSEEEMRRYCKEVDGPKLANMLEFGKTPILPPAQLQAMGYKIAAYPLSLLSASIKAMNTVLSRLKAEEPLDDLLEGFEDVQRVVGFVDY 708
            MTGFGVS +HG PDTQL+SYAEM   A  I + L  IPCIGDGDTGYGNAVNVKRTV+GYAQ G+A IMIEDQV+PK+CGHTRGK VVGR EA +RV+AACDARDEG DI+++ARTDARG LG+ EALERC+EF+RIGADI FLEAP+S +EM+++C EV GPKLANMLE GKTPIL P +L AMG+ IAAYPL+LLSAS++AM   L RLKA E  DDLL  F++VQ  VGF DY
Sbjct:   94 MTGFGVSASHGFPDTQLISYAEMQQRALEIIAALDSIPCIGDGDTGYGNAVNVKRTVRGYAQAGLAAIMIEDQVSPKKCGHTRGKDVVGRAEALARVQAACDARDEGADILILARTDARGPLGMREALERCQEFKRIGADIIFLEAPESVQEMQQFCDEVPGPKLANMLEHGKTPILSPKELGAMGFAIAAYPLTLLSASMRAMRFALQRLKAGESCDDLLLPFQEVQAGVGFPDY 329          
BLAST of mRNA_H-elongata_contig53077.12635.1 vs. uniprot
Match: W7TTL0_9STRA (Carboxyvinyl-carboxyphosphonate phosphorylmutase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TTL0_9STRA)

HSP 1 Score: 332 bits (851), Expect = 4.870e-111
Identity = 171/244 (70.08%), Postives = 199/244 (81.56%), Query Frame = 1
Query:    1 MTGFGVSGAHGLPDTQLLSYAEMLASATNICSTLRRIPCIGDGDTGYGNAVNVKRTVKGYAQVGMAGIMIEDQVAPKRCGHTRGKSVVGREEAYSRVRAACDARDEGTDIVVMARTDARGVLGIEEALERCREFRRIGADITFLEAPQSEEEMRRYCKEVDGPKLANMLEFGKTPILPPAQLQAMGYKIAAYPLSLLSASIKAMNTVLSRLKAEEPLDDLLEGFEDVQRVVGFVDYDNTAAEYK 732
            MTGFGVS A G PDTQLLSYAEM+ +A  I   L  IPCIGDGDTGYGNAVNVKRTV GYAQ G+AGIMIEDQVAPK+CGHT+GKS V REEA++RV+AA DAR+EG DI++MARTDAR  LG++EA+ RC++FR IGADITFLEAP SEEEMRRYC+EV+GPKLANML+ G+TP+LPPA+LQ MGY I AYPL+LLSA IKAM TVL+  K  +  + LL  FE+ + VVGF  Y   AAE K
Sbjct:   93 MTGFGVSAARGHPDTQLLSYAEMVDNARQISEALHTIPCIGDGDTGYGNAVNVKRTVGGYAQAGLAGIMIEDQVAPKKCGHTKGKSCVSREEAFARVQAAVDARNEGADILIMARTDARAGLGMDEAIYRCQKFREIGADITFLEAPHSEEEMRRYCQEVEGPKLANMLQNGRTPVLPPAKLQEMGYTIVAYPLALLSAGIKAMRTVLTLAKDGKEFEHLLADFEETKAVVGFPAY--YAAEEK 334          
BLAST of mRNA_H-elongata_contig53077.12635.1 vs. uniprot
Match: A0A0G4G948_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4G948_VITBC)

HSP 1 Score: 318 bits (816), Expect = 1.450e-106
Identity = 154/236 (65.25%), Postives = 190/236 (80.51%), Query Frame = 1
Query:    1 MTGFGVSGAHGLPDTQLLSYAEMLASATNICSTLRRIPCIGDGDTGYGNAVNVKRTVKGYAQVGMAGIMIEDQVAPKRCGHTRGKSVVGREEAYSRVRAACDARDEGTDIVVMARTDARGVLGIEEALERCREFRRIGADITFLEAPQSEEEMRRYCKEVDGPKLANMLEFGKTPILPPAQLQAMGYKIAAYPLSLLSASIKAMNTVLSRLKAEEPLDDLLEGFEDVQRVVGFVDY 708
            M+GF VS A G PDTQL+SY EM+ +  +IC+TL+  P IGDGD GYGN VNVKRTVKGYAQ G A +MIEDQVAPKRCGHT+GK V+  E+A  +++AA DAR+EG DI+++ARTDAR   G++EA+ RC+ FRR+GADITFLEAPQ+EEEMRRYC EVDGPKLANMLE GK+PI+PP +LQA+G+KI AYPL+LLS+ IKAM   L  LKA +P D  +  FED++ +VGF DY
Sbjct:   43 MSGFSVSAARGFPDTQLISYQEMVDTCASICATLKTTPLIGDGDNGYGNPVNVKRTVKGYAQAGAACVMIEDQVAPKRCGHTKGKDVISYEDACMKIQAAVDARNEGRDILILARTDARATHGLDEAIRRCQAFRRLGADITFLEAPQTEEEMRRYCTEVDGPKLANMLEGGKSPIIPPKELQAIGFKIVAYPLTLLSSGIKAMKNALDALKAGKPTDSYILPFEDLRAIVGFEDY 278          
BLAST of mRNA_H-elongata_contig53077.12635.1 vs. uniprot
Match: A0A0G4I971_9ALVE (Uncharacterized protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4I971_9ALVE)

HSP 1 Score: 319 bits (817), Expect = 1.750e-106
Identity = 172/258 (66.67%), Postives = 197/258 (76.36%), Query Frame = 1
Query:    1 MTGFGVSGAHGLPDTQLLSYAEMLASATNICSTLRR-IPCIGDGDTGYGNAVNVKRTVKGYAQVGMAGIMIEDQVAPKRCGHTRGKSVVGREEAYSRVRAACDARDE--------GTDIVVMARTDARGVLGIEEALERCREFRRIGADITFLEAPQSEEEMRRYCKEVDGPKLANMLEFGKTPILPPAQLQAMGYKIAAYPLSLLSASIKAMNTVLSRLKAEEPLD---DLLEGFEDVQRVVGFVDYDNTAAEYKLD 738
            MTGFGVS + G PD QL+S+ EML+SAT I + LR+  PCI DGDTGYGNAVNVKRTV+GYAQVGMAG+MIEDQVAPKRCGHTR K+VVG +EA +RVRAACDARDE        G DI VMARTDA   L  EEAL RCR FR  GADITFLEAP+S EEM+RYC+EV+GPKLANM+E GKTP+LPP++LQ MGY IAAYP+SLLSASI AM   L ++   E L+   D+L  F DV R VGF DY    A YK +
Sbjct:   54 MTGFGVSASRGFPDAQLVSFGEMLSSATTIVAALRKGTPCIADGDTGYGNAVNVKRTVRGYAQVGMAGVMIEDQVAPKRCGHTRVKAVVGFDEALARVRAACDARDEIRSAGLYGGNDICVMARTDANNALDFEEALRRCRAFREAGADITFLEAPKSIEEMKRYCEEVEGPKLANMVEGGKTPVLPPSELQKMGYSIAAYPVSLLSASIGAMRGALEKIHKGEKLEEGKDILP-FSDVCRQVGFEDYWEEEARYKTE 310          
BLAST of mRNA_H-elongata_contig53077.12635.1 vs. uniprot
Match: A0A7S1XX81_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XX81_9STRA)

HSP 1 Score: 319 bits (818), Expect = 1.900e-106
Identity = 173/261 (66.28%), Postives = 205/261 (78.54%), Query Frame = 1
Query:    1 MTGFGVSGAHGLPDTQLLSYAEMLASATNICSTLRR--IPCIGDGDTGYGNAVNVKRTVKGYAQVGMAGIMIEDQVAPKRCGHTRGKSVVGREEAYSRVRAACDARDE-----GTDIVVMARTDARGVLGIEEALERCREFRRIGADITFLEAPQSEEEMRRYCKEVDGPKLANMLEFGKTPILPPAQLQAMGYKIAAYPLSLLSASIKAMNTVLSRLKA--EEP------LDDL-LEGFEDVQRVVGFVDYDNTAAEYKL 735
            MTGFGVS A G PDT L+SYAEM ASA +I + LR   IPCIGDGDTGYGNA+NVKRTV+GYA  G+A IMIEDQVAPKRCGHT+GKSV  REEA+SRV+AACDARDE       DI+++ARTDARG LG++EA+ERC++FR IGADITFLEAPQ+ EEMRRYC EV GPKLANMLE GKTPIL PA+L  +G+ IAAYPL+LLSA+IKA    L+ LKA  ++P      +DDL L+ FE+VQ VVGF  Y +    Y++
Sbjct:   63 MTGFGVSAARGFPDTGLVSYAEMEASARDITAALRPYGIPCIGDGDTGYGNAINVKRTVQGYAATGLAAIMIEDQVAPKRCGHTKGKSVTNREEAFSRVQAACDARDELVAQGANDILILARTDARGPLGLDEAIERCQKFREIGADITFLEAPQTVEEMRRYCTEVTGPKLANMLEQGKTPILSPAELADVGFSIAAYPLTLLSAAIKAQENALALLKATYDDPDTPTPSVDDLGLQTFENVQDVVGFPKYWDEEERYRI 323          
BLAST of mRNA_H-elongata_contig53077.12635.1 vs. uniprot
Match: D0P0N1_PHYIT (Carboxyvinyl-carboxyphosphonate phosphorylmutase, putative n=14 Tax=Phytophthora TaxID=4783 RepID=D0P0N1_PHYIT)

HSP 1 Score: 315 bits (808), Expect = 1.640e-105
Identity = 164/261 (62.84%), Postives = 196/261 (75.10%), Query Frame = 1
Query:    1 MTGFGVSGAHGLPDTQLLSYAEMLASATNICSTLRRIPCIGDGDTGYGNAVNVKRTVKGYAQVGMAGIMIEDQVAPKRCGHTRGKSVVGREEAYSRVRAACDARDEGT-DIVVMARTDARGVLGIEEALERCREFRRIGADITFLEAPQSEEEMRRYCKEVDGPKLANMLEFGKTPILPPAQLQAMGYKIAAYPLSLLSASIKAMNTVLSRLKAEE----------------PLDDLLEGFEDVQRVVGFVDYDNTAAEYK 732
            MTGFGVS  HGLPDTQLLS+ EM+ SA+ +C +LR +PCIGDGDTGYGNA+NVKRTV+ YAQ GMAGIM+EDQVAPKRCGHT GK+VV REEA++RVRAA DAR EG  DIV+MARTDARG   ++EA+ RC EF R+GADITFLEAPQS +EM++YC+EV GPK+ANM+E G TP+L P QL  +GYK+AAYP++LLSASIKAM   L  LK +                  L+ LL  F  V+ VVGF +Y    A YK
Sbjct:   23 MTGFGVSAVHGLPDTQLLSFGEMVRSASTVCESLRNVPCIGDGDTGYGNAINVKRTVRAYAQAGMAGIMLEDQVAPKRCGHTAGKAVVTREEAFARVRAAVDARTEGQLDIVIMARTDARGTHSLDEAIARCNEFARLGADITFLEAPQSVDEMKQYCREVPGPKMANMVENGLTPVLLPEQLGEVGYKLAAYPITLLSASIKAMEDALRLLKCQTGGEKQEDTGNNATPNAELNKLLCDFAHVKDVVGFTEYYAEEARYK 283          
BLAST of mRNA_H-elongata_contig53077.12635.1 vs. uniprot
Match: A0A7S2SD78_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SD78_9STRA)

HSP 1 Score: 317 bits (813), Expect = 2.400e-105
Identity = 163/248 (65.73%), Postives = 193/248 (77.82%), Query Frame = 1
Query:    1 MTGFGVSGAHGLPDTQLLSYAEMLASATNICSTLRRIPCIGDGDTGYGNAVNVKRTVKGYAQVGMAGIMIEDQVAPKRCGHTRGKSVVGREEAYSRVRAACDARDE----GTDIVVMARTDARGVLGIEEALERCREFRRIGADITFLEAPQSEEEMRRYCKEVDGPKLANMLEFGKTPILPPAQLQAMGYKIAAYPLSLLSASIKAMNTVLSRLKAEEPLDDLLEGFEDVQRVVGFVDYDNTAAEYK 732
            MTGFGVS  HG+PDTQLLSY EM A+A  I S+L+ IPCIGDGDTGYGN +NV+RTV GY QVG+AGIM+EDQV+PKRCGH  GKSVVGREEA  R+RAA  AR+E    G D++++ARTDARG  G++EA+ERCR FR  GADITFLEAP+S EEMR YC +V+GPKLANMLE G TPILPP +L  MGY IAAYPLSLL+ASI AM+  LSRL   EPLDD+L  F   +  VGF +Y     +++
Sbjct:  101 MTGFGVSAVHGVPDTQLLSYGEMQAAARVITSSLQAIPCIGDGDTGYGNPMNVQRTVHGYHQVGLAGIMLEDQVSPKRCGHVAGKSVVGREEAVQRIRAAVLAREEIRAQGGDMIILARTDARGTDGMDEAIERCRRFREEGADITFLEAPESVEEMREYCDKVEGPKLANMLENGLTPILPPKELAEMGYTIAAYPLSLLAASIHAMDQALSRLALGEPLDDILCSFSRTKEAVGFSEYAKREEQFR 348          
BLAST of mRNA_H-elongata_contig53077.12635.1 vs. uniprot
Match: A0A813KL40_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813KL40_POLGL)

HSP 1 Score: 317 bits (811), Expect = 3.720e-105
Identity = 161/244 (65.98%), Postives = 189/244 (77.46%), Query Frame = 1
Query:    1 MTGFGVSGAHGLPDTQLLSYAEMLASATNICSTLRRIPCIGDGDTGYGNAVNVKRTVKGYAQVGMAGIMIEDQVAPKRCGHTRGKSVVGREEAYSRVRAACDARDEGTDIVVMARTDARGVLGIEEALERCREFRRIGADITFLEAPQSEEEMRRYCKEVDGPKLANMLEFGKTPILPPAQLQAMGYKIAAYPLSLLSASIKAMNTVLSRLKAEEPLDDLLEGFEDVQRVVGFVDYDNTAAEYK 732
            MTGFGVS AHG PD QL+SY EM+ +A +IC +L+RI CIGDGDTGYGNAVNVKRTV+GYAQ GMA IMIEDQVAPKRCGHTRGKSVV REEA +R+RAACDARDEG DI ++ARTDAR   G+EEA+ RC+ F   GADITFLEAP SE+EM RYC+EV GPKL NML  GKTP+L   +L+ MG+ +AAYPL+LLSA +KA    L+RL+  +   DL   FE ++ VVGF DY      YK
Sbjct:   96 MTGFGVSAAHGYPDCQLVSYQEMVDTAFHICGSLQRICCIGDGDTGYGNAVNVKRTVRGYAQAGMAAIMIEDQVAPKRCGHTRGKSVVSREEAIARIRAACDARDEGQDICILARTDARATEGLEEAIARCKAFVEAGADITFLEAPLSEDEMERYCREVPGPKLVNMLPSGKTPMLSLGRLEEMGFALAAYPLTLLSAGLKAQEEALTRLRDGKTTWDLELDFETLKDVVGFTDYYKEEDRYK 339          
BLAST of mRNA_H-elongata_contig53077.12635.1 vs. uniprot
Match: W2PEU5_PHYPN (Uncharacterized protein n=3 Tax=Phytophthora TaxID=4783 RepID=W2PEU5_PHYPN)

HSP 1 Score: 313 bits (801), Expect = 9.000e-105
Identity = 164/261 (62.84%), Postives = 192/261 (73.56%), Query Frame = 1
Query:    1 MTGFGVSGAHGLPDTQLLSYAEMLASATNICSTLRRIPCIGDGDTGYGNAVNVKRTVKGYAQVGMAGIMIEDQVAPKRCGHTRGKSVVGREEAYSRVRAACDARDEGT-DIVVMARTDARGVLGIEEALERCREFRRIGADITFLEAPQSEEEMRRYCKEVDGPKLANMLEFGKTPILPPAQLQAMGYKIAAYPLSLLSASIKAMNTVLSRLKAEE----------------PLDDLLEGFEDVQRVVGFVDYDNTAAEYK 732
            MTGFGVS  HGLPDTQLLS+ EM  +A  +C +LR +PCIGDGDTGYGNA+NVKRTV+ YAQ GMAGIM+EDQV+PKRCGHT GK+VV REEA++RVRAA DAR EG  DIV+MARTDARG   ++EA+ RC+EF R+GADITFLEAPQS EEM  YC+EV GPK+ANM+E G TP+L P QL  MGYK+AAYP++LLSASIKAM   L  LK +                  LD LL  F  V+ VVGF +Y      YK
Sbjct:    1 MTGFGVSAVHGLPDTQLLSFGEMARTAATVCESLRNVPCIGDGDTGYGNAMNVKRTVRAYAQAGMAGIMLEDQVSPKRCGHTAGKAVVSREEAFARVRAAVDARREGQFDIVIMARTDARGTHSLDEAIARCKEFARLGADITFLEAPQSVEEMETYCREVPGPKMANMVENGLTPVLLPEQLGNMGYKLAAYPITLLSASIKAMEEALRLLKCQTGGEKKEETGNNATPSTELDKLLCDFAHVKDVVGFTEYYAEEDRYK 261          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig53077.12635.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FVV1_ECTSI1.040e-15288.21Carboxyvinyl-carboxyphosphonate phosphorylmutase n... [more]
A0A835ZB25_9STRA4.470e-11371.61Carboxyvinyl-carboxyphosphonate phosphorylmutase n... [more]
W7TTL0_9STRA4.870e-11170.08Carboxyvinyl-carboxyphosphonate phosphorylmutase n... [more]
A0A0G4G948_VITBC1.450e-10665.25Uncharacterized protein n=1 Tax=Vitrella brassicaf... [more]
A0A0G4I971_9ALVE1.750e-10666.67Uncharacterized protein n=1 Tax=Chromera velia CCM... [more]
A0A7S1XX81_9STRA1.900e-10666.28Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]
D0P0N1_PHYIT1.640e-10562.84Carboxyvinyl-carboxyphosphonate phosphorylmutase, ... [more]
A0A7S2SD78_9STRA2.400e-10565.73Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A813KL40_POLGL3.720e-10565.98Hypothetical protein n=1 Tax=Polarella glacialis T... [more]
W2PEU5_PHYPN9.000e-10562.84Uncharacterized protein n=3 Tax=Phytophthora TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig53077contigH-elongata_contig53077:1286..2998 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score443.4
Seed ortholog evalue7.2e-122
Seed eggNOG ortholog2880.D7FVV1
KEGG rclassRC00286,RC00287
KEGG koko:K03417
KEGG ReactionR00409
KEGG Pathwayko00640,map00640
EggNOG free text desc.isocitrate lyase activity
EggNOG OGsCOG2513@1,KOG1260@2759
EC4.1.3.30
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptioncarboxyvinyl-carboxyphosphonate phosphorylmutase
Ec32 orthologEc-01_002250.1
Exons5
Model size741
Cds size741
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig53077.12635.1prot_H-elongata_contig53077.12635.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig53077 1286..2998 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930866.0686448-CDS-H-elongata_contig53077:1285..15161622930866.0686448-CDS-H-elongata_contig53077:1285..1516Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53077 1286..1516 -
1691679603.6952403-CDS-H-elongata_contig53077:1285..15161691679603.6952403-CDS-H-elongata_contig53077:1285..1516Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53077 1286..1516 -
1622930866.0838664-CDS-H-elongata_contig53077:1817..20161622930866.0838664-CDS-H-elongata_contig53077:1817..2016Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53077 1818..2016 -
1691679603.7141552-CDS-H-elongata_contig53077:1817..20161691679603.7141552-CDS-H-elongata_contig53077:1817..2016Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53077 1818..2016 -
1622930866.0995243-CDS-H-elongata_contig53077:2191..23161622930866.0995243-CDS-H-elongata_contig53077:2191..2316Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53077 2192..2316 -
1691679603.7251036-CDS-H-elongata_contig53077:2191..23161691679603.7251036-CDS-H-elongata_contig53077:2191..2316Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53077 2192..2316 -
1622930866.1140838-CDS-H-elongata_contig53077:2506..26441622930866.1140838-CDS-H-elongata_contig53077:2506..2644Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53077 2507..2644 -
1691679603.7368126-CDS-H-elongata_contig53077:2506..26441691679603.7368126-CDS-H-elongata_contig53077:2506..2644Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53077 2507..2644 -
1622930866.1289437-CDS-H-elongata_contig53077:2950..29981622930866.1289437-CDS-H-elongata_contig53077:2950..2998Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53077 2951..2998 -
1691679603.7492774-CDS-H-elongata_contig53077:2950..29981691679603.7492774-CDS-H-elongata_contig53077:2950..2998Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53077 2951..2998 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig53077.12635.1

>prot_H-elongata_contig53077.12635.1 ID=prot_H-elongata_contig53077.12635.1|Name=mRNA_H-elongata_contig53077.12635.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=247bp
MTGFGVSGAHGLPDTQLLSYAEMLASATNICSTLRRIPCIGDGDTGYGNA
VNVKRTVKGYAQVGMAGIMIEDQVAPKRCGHTRGKSVVGREEAYSRVRAA
CDARDEGTDIVVMARTDARGVLGIEEALERCREFRRIGADITFLEAPQSE
EEMRRYCKEVDGPKLANMLEFGKTPILPPAQLQAMGYKIAAYPLSLLSAS
IKAMNTVLSRLKAEEPLDDLLEGFEDVQRVVGFVDYDNTAAEYKLD*
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mRNA from alignment at H-elongata_contig53077:1286..2998-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig53077.12635.1 ID=mRNA_H-elongata_contig53077.12635.1|Name=mRNA_H-elongata_contig53077.12635.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1713bp|location=Sequence derived from alignment at H-elongata_contig53077:1286..2998- (Himanthalia elongata Himel1 dioecious)
ATGACAGGCTTCGGGGTATCTGGGGCTCATGGACTGCCAGACACTCAGGT AATACCACCTCGGAGGGCGTGTTCGCAGCACTAAACCTTGTCCAGAGTAT GCGGCACTACCTCTGGTCCAGCAGTCCAATTTCGCTTGTGAAGGTTCCAT GTTTTTGTTTCCATCGGGCGAGAAACCGAACGGCGCCATGTTGCTCTAGA ACGCTGGGCGAGTGGTTTTGCACCGTCGTGTGTGACCAATTCTGCACAAC GATCTCATCCCTCGTCTCGTGACGCCTCTTTAGAGGTAAATCCCGGGTTC ACGTGAACGGCCATCGTTTGCACGAACTCTATAATCATTTTTTGTTTGGT GCAGCTGCTCTCTTACGCGGAAATGCTGGCATCTGCCACAAACATCTGCT CAACGCTGCGAAGGATCCCCTGTATCGGGGATGGAGACACGGGCTACGGG AACGCGGTAAACGTCAAGCGCACGGTCAAGGGCTACGCGCAGGTGAGACA CGTCGGTAGATAACAGGACCGAGACTTTGGAACACCTCGTGATACAGACC CTCTCTCTTTACCTGTGTCGCGGGGAAAGGCTTTTCCCCCCCTTGGTGGT ACGAGAGCTCTTACCAATAACGCCTTTCCCCATCATCCCACTATGTTGTC GGTTTGTGATCGGCGCCCCTCACCTTGGAAAGGTGGGCATGGCGGGCATC ATGATTGAGGATCAGGTAGCGCCGAAACGCTGTGGACATACAAGGGGGAA GAGCGTGGTGGGGAGGGAAGAGGCCTACAGCCGCGTCAGGGCGGCCTGCG ACGCGAGGTACCGACTTCTCCACAGCCTTACCGTGCTGACGAAGGGGTTG GACTTGCATCGCCCCCGTTGGACATCCTCGGTGATTCTTCGAAGCGTATT CGCAGCATCTTTTTGTCGAGCCAACTGTGCCGTCCCTCCCTGTCTCTCCG ATGCACTTGGCATACGCTACCTCACTTCGCAGGGACGAAGGGACCGATAT TGTCGTCATGGCGCGCACCGACGCAAGGGGGGTCCTAGGCATTGAGGAGG CGTTGGAGCGGTGTCGGGAGTTCAGGCGGATCGGCGCGGACATCACTTTC TTAGAAGCTCCGCAGAGCGAGGAAGAGATGCGGCGTTACTGCAAAGAAGT GGATGGCCCCAAGCTCGCCAACATGCTCGAGGTACCCCTTACGGACGCGC TGACAAGGTTTCCGAGCGCTCCTCGGTTTCAAGTACTCTGCTCGAGGAGG GAGAAACCCTGGCGTTTGCTCCGCTTGTTCAGAGGCGCGTAAAAATGATT GCAAGCCTCGGCATTTGTCGTAAGTACTGGTGCGATGCGGACGGTCATCA CGCCCAACAGATTTGTTGAGGGTGCGCAGCTTCTTACTTACTTTTCATGG CCTTCTTGTTTTCGACCGCGGCGCACCGTATACCCACGTTTGTTGCTGCC TTTGAAACCCCGTGCGCGATCCCGTGGAACAGTTTGGGAAAACCCCGATC TTGCCGCCTGCGCAGCTCCAAGCGATGGGCTACAAGATCGCGGCGTACCC GCTGAGCCTCCTGAGCGCGAGCATAAAGGCTATGAACACGGTGCTCTCGA GGCTTAAGGCCGAGGAGCCCCTGGACGACTTGCTGGAAGGGTTCGAGGAC GTGCAGCGAGTGGTGGGGTTCGTGGACTACGACAACACTGCCGCGGAGTA TAAACTTGATTAG
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Coding sequence (CDS) from alignment at H-elongata_contig53077:1286..2998-

>mRNA_H-elongata_contig53077.12635.1 ID=mRNA_H-elongata_contig53077.12635.1|Name=mRNA_H-elongata_contig53077.12635.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1482bp|location=Sequence derived from alignment at H-elongata_contig53077:1286..2998- (Himanthalia elongata Himel1 dioecious)
ATGACAGGCTTCGGGGTATCTGGGGCTCATGGACTGCCAGACACTCAGAT
GACAGGCTTCGGGGTATCTGGGGCTCATGGACTGCCAGACACTCAGCTGC
TCTCTTACGCGGAAATGCTGGCATCTGCCACAAACATCTGCTCAACGCTG
CGAAGGATCCCCTGTATCGGGGATGGAGACACGGGCTACGGGAACGCGGT
AAACGTCAAGCGCACGGTCAAGGGCTACGCGCAGCTGCTCTCTTACGCGG
AAATGCTGGCATCTGCCACAAACATCTGCTCAACGCTGCGAAGGATCCCC
TGTATCGGGGATGGAGACACGGGCTACGGGAACGCGGTAAACGTCAAGCG
CACGGTCAAGGGCTACGCGCAGGTGGGCATGGCGGGCATCATGATTGAGG
ATCAGGTAGCGCCGAAACGCTGTGGACATACAAGGGGGAAGAGCGTGGTG
GGGAGGGAAGAGGCCTACAGCCGCGTCAGGGCGGCCTGCGACGCGAGGTG
GGCATGGCGGGCATCATGATTGAGGATCAGGTAGCGCCGAAACGCTGTGG
ACATACAAGGGGGAAGAGCGTGGTGGGGAGGGAAGAGGCCTACAGCCGCG
TCAGGGCGGCCTGCGACGCGAGGGACGAAGGGACCGATATTGTCGTCATG
GCGCGCACCGACGCAAGGGGGGTCCTAGGCATTGAGGAGGCGTTGGAGCG
GTGTCGGGAGTTCAGGCGGATCGGCGCGGACATCACTTTCTTAGAAGCTC
CGCAGAGCGAGGAAGAGATGCGGCGTTACTGCAAAGAAGTGGATGGCCCC
AAGCTCGCCAACATGCTCGAGGGACGAAGGGACCGATATTGTCGTCATGG
CGCGCACCGACGCAAGGGGGGTCCTAGGCATTGAGGAGGCGTTGGAGCGG
TGTCGGGAGTTCAGGCGGATCGGCGCGGACATCACTTTCTTAGAAGCTCC
GCAGAGCGAGGAAGAGATGCGGCGTTACTGCAAAGAAGTGGATGGCCCCA
AGCTCGCCAACATGCTCGAGTTTGGGAAAACCCCGATCTTGCCGCCTGCG
CAGCTCCAAGCGATGGGCTACAAGATCGCGGCGTACCCGCTGAGCCTCCT
GAGCGCGAGCATAAAGGCTATGAACACGGTGCTCTCGAGGCTTAAGGCCG
AGGAGCCCCTGGACGACTTGCTGGAAGGGTTCGAGGACGTGCAGCGAGTG
GTGGGGTTCGTGGACTACGACAACACTGCCGCGGAGTATAAACTTGATTA
GTTTGGGAAAACCCCGATCTTGCCGCCTGCGCAGCTCCAAGCGATGGGCT
ACAAGATCGCGGCGTACCCGCTGAGCCTCCTGAGCGCGAGCATAAAGGCT
ATGAACACGGTGCTCTCGAGGCTTAAGGCCGAGGAGCCCCTGGACGACTT
GCTGGAAGGGTTCGAGGACGTGCAGCGAGTGGTGGGGTTCGTGGACTACG
ACAACACTGCCGCGGAGTATAAACTTGATTAG
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