mRNA_H-elongata_contig52972.12623.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig52972.12623.1 vs. uniprot
Match: A0A6H5JU68_9PHAE (RING-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JU68_9PHAE) HSP 1 Score: 291 bits (744), Expect = 6.800e-92 Identity = 196/379 (51.72%), Postives = 222/379 (58.58%), Query Frame = 1
Query: 1 AGKQTLGQEYCDIGLSM----GGAVSTPFSPGSSVRFYTLLRVLVPYLQRLRLREGWHGLRSLRDPFGRGGSAAALGVAXXXXXXXXXVALSPPVAI-VSMLDHDALPETRVDVRDDAEPEGEXXXAGAPALTSSRRPQTDFGSGGRCRLRRRWFRAAIVFLGRALSSVRRNRPAISGMLEWALRVHLAVFYFDGRYANLAMRVAGARLAYTRAKDEP-RARYAILGVFSLVQAVGEAASACAXXXX--------ARSERDPRHLEGRRDFGRGNEAVDAPGEEKSVRDAGRQADGLAKASSRVPAVTPEKTPADAALFPRSRRRCSLCMSPRQNAAATPCGHLFCWECVIGWCQTNPECPLCRQPASPQSIVCLYQYA 1095
AGKQTLGQEYC I L GG S+P S ++ YT LRV VPYLQ R+REGWHGLRSLRDPFG GG+A +L A XXXXXXXX A++PPV I VS + R XXX FL R L+ RR RPA+SG+LEWALR+HLA FYFDGR+AN+AMR GARLAY R + E R RYA+LG+ L+QA EAA+A A A SE PR EG G G D + G RVPA T +TPAD ALFP SRRRCSLCMS R+N AATPCGHLFCWEC++GWCQTNPECPLCRQP +PQSIVCLYQYA
Sbjct: 71 AGKQTLGQEYCGIDLVPSGRGGGRESSPLSR-RPLQAYTFLRVAVPYLQE-RMREGWHGLRSLRDPFGSGGAATSL--AAXXXXXXXXXAVAPPVGIAVSSVSGGTAAADRAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-XXXAFLRRVLAWARRRRPAMSGVLEWALRLHLAAFYFDGRFANVAMRAVGARLAYARPEQEAARTRYAVLGLLLLLQAAAEAATASAETAERWRATARAALSESFPRSTEGEAVCGEGGGPSDLG-----------EGVGDTALPPRVPAATRGRTPADVALFPPSRRRCSLCMSSRENVAATPCGHLFCWECIVGWCQTNPECPLCRQPVAPQSIVCLYQYA 433
BLAST of mRNA_H-elongata_contig52972.12623.1 vs. uniprot
Match: A0A836CLL0_9STRA (Peroxisome biogenesis factor 10 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLL0_9STRA) HSP 1 Score: 175 bits (443), Expect = 8.880e-48 Identity = 128/364 (35.16%), Postives = 165/364 (45.33%), Query Frame = 1
Query: 1 AGKQTLGQEYCDIGLSMGGAVSTPFSPGSSVRFYTLLRVLVPYLQRLRLREGWHGLRSLRDPFGRGGSAAALGVAXXXXXXXXXVALSPPVAIVSMLDHDALPETRVDVRDDAEPEGEXXXAGAPALTSSRRPQTDFGSGGRCRLRRRWFRAAIVFLGRALSSVRRNRPAISGMLEWALRVHLAVFYFDGRYANLAMRVAGARLAYTRAKDEPRARYAILGVFSLVQAVGEAASACAXXXXARSERDPRHLEGRRDFGRGNEAVDAPGEEKSVRDAGRQADGLAKASSRVPAVTPEKTPADAALFPRSRRRCSLCMSPRQNAAATPCGHLFCWECVIGWCQTNPECPLCRQPASPQSIVCLYQY 1092
AG+QT+GQEYCD+ S G P S + Y+L+ V PYL RL GW LR +R+PF R AA + A A +A T V A P+ + A ++ S+ + +L W HLA+F+ +GRYAN AMR A RL Y RA+D P RY ILGV L + E + A R L G + + G+ +A+ AS RVP ++ T A A R RC+LCM PR++ AAT CGHLFCWEC++GWC+TNPECPLCRQPA PQSIVC+Y Y
Sbjct: 50 AGRQTVGQEYCDLMFSRNGLCDVPLSARAG---YSLVEVCWPYLLS-RLDTGWPRLRDIREPFDRHAEAARIRDAMRAHAAESESQQPTSAA-------EAAAVTPV-----APPDNDGSRDAAYSVCSATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAARVLRWLGAFHLALFFLNGRYANAAMRAARVRLMYNRAQDAPLPRYTILGVLMLARFGFEFGAQAA-----------RKLHG---------IIFSDGDGSGGXXXXXKAN---LASQRVPGLSGSDTEAAA-----RRHRCALCMGPREHTAATLCGHLFCWECIVGWCETNPECPLCRQPAEPQSIVCVYHY 369
BLAST of mRNA_H-elongata_contig52972.12623.1 vs. uniprot
Match: A0A485LD12_9STRA (Aste57867_19380 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LD12_9STRA) HSP 1 Score: 129 bits (325), Expect = 1.370e-30 Identity = 70/200 (35.00%), Postives = 105/200 (52.50%), Query Frame = 1
Query: 496 RNRPAISGMLEWALRVHLAVFYFDGRYANLAMRVAGARLAYTRAKDEPRARYAILGVFSLVQAVGEAASACAXXXXARSERDPRHLEGRRDFGRGNEAVDAPGEEKSVRDAGRQADGLAKASSRVPA-VTPEKTPADAALFPRSRRRCSLCMSPRQNAAATPCGHLFCWECVIGWCQTNPECPLCRQPASPQSIVCLYQY 1092
R ++ G++ + HLA+F+ +GRY +++ RVAG R ++ +P A++AILG LV+A+ SAC A R G A+SR A V ++ PAD + P+ ++C+LC++ R + + TPCGH+FCWEC++GWCQ+ PECPLCRQ PQ + CLY Y
Sbjct: 219 RTGLSVDGIVHGLAQCHLALFFLNGRYFHISKRVAGLRYVLSQRLSQPFAQFAILGYMILVRAM---ISACLALPPAM----------------------------------RCLLGHQVANSRPAAMVEGKRVPADTGVSPKQTKKCALCLTERSHPSMTPCGHVFCWECIVGWCQSKPECPLCRQVVLPQDVKCLYNY 381
BLAST of mRNA_H-elongata_contig52972.12623.1 vs. uniprot
Match: T0Q7Z6_SAPDV (RING-type domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=T0Q7Z6_SAPDV) HSP 1 Score: 126 bits (316), Expect = 1.640e-29 Identity = 72/202 (35.64%), Postives = 101/202 (50.00%), Query Frame = 1
Query: 496 RNRPAISGMLEWALRVHLAVFYFDGRYANLAMRVAGARLAYTRAKDEPRARYAILGVFSLVQAVGEAA---SACAXXXXARSERDPRHLEGRRDFGRGNEAVDAPGEEKSVRDAGRQADGLAKASSRVPAVTPEKTPADAALFPRSRRRCSLCMSPRQNAAATPCGHLFCWECVIGWCQTNPECPLCRQPASPQSIVCLYQY 1092
R +++ ++ A+ VHLA+FY GRY ++A RVAG R TR D P A+++ILG L++ + SAC E PR L+ R P +E P VT ++R+C+LC++ R + A TPCGH+FCWEC++GWCQ PECPLCRQ PQ + C+Y Y
Sbjct: 196 RTGTSVTTWMQAAVAVHLALFYLHGRYFDMAKRVAGIRYILTRKLDAPHAQFSILGYLILLRLALSSVLGLSACLRTLLG-VEVAPRRLDQHR----------VPSDESR------------------PTVT-------------AQRKCALCLTERSHPAMTPCGHVFCWECIVGWCQNKPECPLCRQLVQPQDVKCIYSY 355
BLAST of mRNA_H-elongata_contig52972.12623.1 vs. uniprot
Match: A0A328E4H4_9ASTE (RING-type domain-containing protein n=3 Tax=Cuscuta sect. Cleistogrammica TaxID=1824901 RepID=A0A328E4H4_9ASTE) HSP 1 Score: 124 bits (311), Expect = 1.690e-28 Identity = 113/372 (30.38%), Postives = 156/372 (41.94%), Query Frame = 1
Query: 1 AGKQTLGQEYCDIGLSMGGAVSTPFSPGSSVRFYTLLRVLVPYL-QRLRLREGWHGLRSLRDPFGR----GGSAAALGVAXXXXXXXXXVALSPPVAIVSMLDHDALPETRVDVRDDAEPEGEXXXAGAPALTSSRRPQTDFGSGGRCRLRRRWFRAA----IVFLGRALSSVRRNRPAISGMLEWALRVHLAVFYFDGRYANLAMRVAGARLAYTRAKDEPRARYAILGVFSLVQAVGEAASACAXXXXARSERDPRHLE-GRRDFGRGNEAVDAPGEEKSVRDAGRQADGLAKASSRVPAVTPEKTPADAALFPRSRRRCSLCMSPRQNAAATPCGHLFCWECVIGWCQTNPECPLCRQPASPQSIVCLY 1086
AGKQTLG+EYCDI + G P +P F + VPYL +R R G+ +L DPF GG++A+ G RV+ +E + S R F S + +LRR W A VF P +L+ +R +L FYF+G Y + + R +G R + + R RY ILGVF L+Q AA + + G + GN V EE ++ G + SS T EK + + +C+LC+S RQ+ ATPCGH+FCW C++ WC PECPLCR PA+ S+VCLY
Sbjct: 91 AGKQTLGEEYCDI-TQVAGPFGVPPTPARRALFI-FYQTTVPYLAERFSSRLASEGI-TLDDPFDDDYSFGGASASSG--------------------------------RVEASTTSE-----------TTSFSSRESLSFFSRLKAKLRRCWLHAVQRWPSVF------------PLAREILQLIIRANLMFFYFEGLYYHSSKRASGIRYVFIGKQANQRPRYQILGVFLLIQLCVLAAERLRRSSLSSLSASVQQTPLGTYQYSPGN-CVPILDEEGNLITGGSEKGSYVFQSS----STSEKQSQTS-----GQSKCTLCLSNRQHPTATPCGHVFCWNCIMEWCNEKPECPLCRSPATHSSLVCLY 394
BLAST of mRNA_H-elongata_contig52972.12623.1 vs. uniprot
Match: A0A2Z4HN89_IPOPC (Peroxisome biogenesis factor 10 n=4 Tax=Ipomoea TaxID=4119 RepID=A0A2Z4HN89_IPOPC) HSP 1 Score: 119 bits (297), Expect = 1.610e-26 Identity = 110/368 (29.89%), Postives = 157/368 (42.66%), Query Frame = 1
Query: 1 AGKQTLGQEYCDIGLSMGGAVSTPFSPGSSVRFYTLLRVLVPYL-QRLRLREGWHGLRSLRDPFGRGGSAAALGVAXXXXXXXXXVALSPPVAIVSMLDHDALPETRVDVRDDAEPEGEXXXAGAPALTSSRRPQTDFGSGGRCRLRRRWFRAAIVFLGRALSSVRRNRPAISGMLEWALRVHLAVFYFDGRYANLAMRVAGARLAYTRAKDEPRARYAILGVFSLVQ-----AVGEAASACAXXXXARSERDPRHLEGRRDFGRGNEAVDAPGEEKSVRDAGRQADGLAKASSRVPAVTPEKTPADAALFPRSRRRCSLCMSPRQNAAATPCGHLFCWECVIGWCQTNPECPLCRQPASPQSIVCLY 1086
AGKQTLG+EYCDI + G P +P F + VPYL +R+ R G+ +L DPF S P ++ S L T ++ A +S+ R S + ++R W A + SV P +L+ +R +L FYF+G Y +L+ R +G R + R RY ILG F LVQ A G + A +++ P + GRG V EE ++ A + P+ T E + + +C+LC+S RQ+ ATPCGH+FCW C++ WC PECPLCR PA+ S+VCLY
Sbjct: 94 AGKQTLGEEYCDI-TQVAGPYGLPPTPARRALFI-FYQTAVPYLAERVSSRIASQGI-TLDDPFDD----------------------SYPFSVASELSSRVEASTTTEI----------------ASSSTSRAHPSVLSRFKTKIRECWLYAVQRW-----PSV---LPLAREILQLVIRANLMFFYFEGLYYHLSKRASGIRYVFIGKPTNQRPRYQILGFFLLVQLCILAAEGLRRRSNLSSISASAQQTPFGTY-QTSSGRG---VPVLNEEGNLITADSEKGSFVS----EPSSTSESQASGLS-------KCTLCLSSRQHPTATPCGHVFCWNCIMEWCNEKPECPLCRSPATHSSLVCLY 397
BLAST of mRNA_H-elongata_contig52972.12623.1 vs. uniprot
Match: UPI00109F5807 (peroxisome biogenesis factor 10 isoform X1 n=2 Tax=Dendrobium catenatum TaxID=906689 RepID=UPI00109F5807) HSP 1 Score: 118 bits (295), Expect = 3.290e-26 Identity = 108/368 (29.35%), Postives = 152/368 (41.30%), Query Frame = 1
Query: 1 AGKQTLGQEYCDIGLSMGGAVSTPFSPGSSVRFYTLLRVLVPYL-QRLRLREGWHGLRSLRDPFGRGGSAAALGVAXXXXXXXXXVALSPPVAIVSMLDHDALPETRVDVRDDAEPE--GEXXXAGAPALTSSRRPQTDFGSGGRCRLRRRWFRAAIVFLGRALSSVRRNRPAISGMLEWALRVHLAVFYFDGRYANLAMRVAGARLAYTRAKDEPRARYAILGVFSLVQAVGEAASACAXXXXAR--SERDPRHLEGRRDF-GRGNEAVDAPGEEKSVRDAGRQADGLAKASSRVPAVTPEKTPADAALFPRSRRRCSLCMSPRQNAAATPCGHLFCWECVIGWCQTNPECPLCRQPASPQSIVCLY 1086
AG+QTLG+EYCD+ + + P +P + F + +VPYL +RL R HG+ FG L E+ R+ A+P G G P S+ + G WF A + P + ALR +L FYF+G Y +++ R AG R + R RY ILG+F LVQ AA + S P L G + GRG ++ G + DA + K+S ++T E P S +C+LC+S RQ+ AT CGH+FCW C++ WC PECPLCR P + S+VC+Y
Sbjct: 103 AGQQTLGEEYCDLS-QVADSYGLPPTPARRIVFI-FYQTVVPYLAERLSSRMTAHGMTMDDFQFGE------------------------------------LHESNYLRRNQAQPSSSGSSSSRGLPTSAISKMKEKFVGL---------WFWAVQKWP--------MVLPFAREAAQLALRANLMFFYFEGLYYHISKRAAGIRYVFIGKPSNQRLRYQILGIFLLVQLCILAAEGLRRSNFSSIASSVHPSSLGGHQSSTGRGLPVLNEDG--NLITDA-----AIKKSSLGSDSLTTESQ------VPVSISKCTLCLSTRQHPTATTCGHVFCWNCIMEWCNEKPECPLCRTPITHSSLVCIY 402
BLAST of mRNA_H-elongata_contig52972.12623.1 vs. uniprot
Match: A0A5D6XGT1_9STRA (RING-type domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XGT1_9STRA) HSP 1 Score: 117 bits (293), Expect = 5.990e-26 Identity = 75/201 (37.31%), Postives = 105/201 (52.24%), Query Frame = 1
Query: 508 AISGMLEWALRVHLAVFYFDGRYANLAMRVAGARLAYTRAKDEPRARYAILGVFSLVQAVGEAASACAXXXXARSERDPRHLEGRRDFGRGNEAVDAPGEEKSVRDAGRQADGLAKASSRVP-AVTPEKTPAD----AALFPRSRRRCSLCMSPRQNAAATPCGHLFCWECVIGWCQTNP-ECPLCRQPASPQSIVCLYQY 1092
+++ + WA ++HLA FY +Y +L+ R++ + + R+ P ++LG ++ A ++R RH V ++K V AG A S RVP AVT +D AAL RSRR+C+LC+ R + AATPCGH+FCWEC++GWCQ N ECPLCRQ A PQ I CLY Y
Sbjct: 224 SVACVKAWASQLHLASFYVSAKYFHLSKRLSNVQYVFVRSDLTPGINLSLLGYLMFLRLFVTAV--------VETKRLRRH-------------VKQDAKQKLVARAGLNPAVYAH-SDRVPTAVTVAAGASDGAEAAALSRRSRRKCALCLGDRTSPAATPCGHVFCWECIVGWCQKNKAECPLCRQEAHPQQIKCLYNY 402
BLAST of mRNA_H-elongata_contig52972.12623.1 vs. uniprot
Match: A0A6I9TKZ1_SESIN (peroxisome biogenesis factor 10 isoform X1 n=2 Tax=Lamiales TaxID=4143 RepID=A0A6I9TKZ1_SESIN) HSP 1 Score: 115 bits (289), Expect = 2.010e-25 Identity = 109/369 (29.54%), Postives = 153/369 (41.46%), Query Frame = 1
Query: 1 AGKQTLGQEYCDIGLSMGGAVSTPFSPGSSVRFYTLLRVLVPYL-QRLRLREGWHGLRSLRDPFGRGGSAAALGVAXXXXXXXXXVALSPPVAIVSMLDHDALPETRVDVRDDAEPEGEXXXAGAPALTSSRRPQTDFGSGGRCRLRRRWFRAAIVFLGRALSSVRRNRPAISGMLEW---ALRVHLAVFYFDGRYANLAMRVAGARLAYTRAKDEPRARYAILGVFSLVQA---VGEAASACAXXXXARSERDPRHLEGRRDFGRGNEAVDAPGEEKSVRDAGRQADGLAKASSRVPAVTPEKTPADAALFPRSRRRCSLCMSPRQNAAATPCGHLFCWECVIGWCQTNPECPLCRQPASPQSIVCLY 1086
AGKQTLG+EYCDI + G P +P F + PY+ +R+ R G+ ++ D + ++D++ + +++ AE +G P SR +A I G L +VRR + E LR +L FYF+G Y +L+ R AG R + R RY ILGVF LVQ E A S + H + GRG ++ G D+G+ SS V TP + + +C+LC+S RQN ATPCGH+FCW C++ WC PECPLCR PA+ S+VCLY
Sbjct: 93 AGKQTLGEEYCDI-TQVAGPYGLPPTPARRSLFI-FYQTAFPYIAERISSRIASQGI-TMAD-----------------------------LLSDDIIDNETISNSQIQSSASAEMSSSFN-SGVPLSALSR------------------LKARIT--GVWLYAVRRWPSVLPFARECFMLVLRANLMFFYFEGLYYHLSKRAAGIRYVFIGKPTNQRPRYQILGVFLLVQLCIIAAEGLRRSNLSTFATSFQQTSHGAYQTSAGRGLPVLNEEGN-LITEDSGK--------SSWVHESTPTSESQASGVS-----KCTLCLSNRQNPTATPCGHVFCWNCIMEWCNEKPECPLCRSPATHSSLVCLY 394
BLAST of mRNA_H-elongata_contig52972.12623.1 vs. uniprot
Match: W4GFD0_9STRA (RING-type domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GFD0_9STRA) HSP 1 Score: 112 bits (281), Expect = 2.810e-25 Identity = 69/202 (34.16%), Postives = 106/202 (52.48%), Query Frame = 1
Query: 508 AISGMLEWALRVHLAVFYFDGRYANLAMRVAGAR--LAYTRAKDEPRARYAILGVFSLVQAVGEAASACAXXXXARSERDPRHLEGRRDFGRGNEAVDAPGEEKSVRDAGRQADGLAKASSRVPA----VTPEKTPADA-ALFPRSRRRCSLCMSPRQNAAATPCGHLFCWECVIGWCQTNPECPLCRQPASPQSIVCLYQY 1092
A+SG+L+ +H+A+F+ G Y +L+ R+AG R L+Y + + A+++ILG L++A A + P ++V R A A ++ RVP +TP P + P+ ++C+LC++ R + +ATPCGHLFCW+C++GWCQ+ PECPLCRQ PQ I CLY Y
Sbjct: 102 AVSGLLQ----LHVALFFLRGTYLHLSKRMAGIRYILSYRPSPNTSFAQFSILGYMILIRAALTA------------------------------SFTLPTIVRAVMGT-RLAPPSAASTHRVPCLAVPITPNPPPRQLPSSSPQRIKKCALCLAERSHPSATPCGHLFCWDCIVGWCQSKPECPLCRQLVLPQDIKCLYNY 268 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig52972.12623.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig52972.12623.1 >prot_H-elongata_contig52972.12623.1 ID=prot_H-elongata_contig52972.12623.1|Name=mRNA_H-elongata_contig52972.12623.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=366bp AGKQTLGQEYCDIGLSMGGAVSTPFSPGSSVRFYTLLRVLVPYLQRLRLRback to top mRNA from alignment at H-elongata_contig52972:354..2723+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig52972.12623.1 ID=mRNA_H-elongata_contig52972.12623.1|Name=mRNA_H-elongata_contig52972.12623.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2370bp|location=Sequence derived from alignment at H-elongata_contig52972:354..2723+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig52972:354..2723+ >mRNA_H-elongata_contig52972.12623.1 ID=mRNA_H-elongata_contig52972.12623.1|Name=mRNA_H-elongata_contig52972.12623.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2196bp|location=Sequence derived from alignment at H-elongata_contig52972:354..2723+ (Himanthalia elongata Himel1 dioecious)back to top |