mRNA_H-elongata_contig52972.12623.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig52972.12623.1
Unique NamemRNA_H-elongata_contig52972.12623.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig52972.12623.1 vs. uniprot
Match: A0A6H5JU68_9PHAE (RING-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JU68_9PHAE)

HSP 1 Score: 291 bits (744), Expect = 6.800e-92
Identity = 196/379 (51.72%), Postives = 222/379 (58.58%), Query Frame = 1
Query:    1 AGKQTLGQEYCDIGLSM----GGAVSTPFSPGSSVRFYTLLRVLVPYLQRLRLREGWHGLRSLRDPFGRGGSAAALGVAXXXXXXXXXVALSPPVAI-VSMLDHDALPETRVDVRDDAEPEGEXXXAGAPALTSSRRPQTDFGSGGRCRLRRRWFRAAIVFLGRALSSVRRNRPAISGMLEWALRVHLAVFYFDGRYANLAMRVAGARLAYTRAKDEP-RARYAILGVFSLVQAVGEAASACAXXXX--------ARSERDPRHLEGRRDFGRGNEAVDAPGEEKSVRDAGRQADGLAKASSRVPAVTPEKTPADAALFPRSRRRCSLCMSPRQNAAATPCGHLFCWECVIGWCQTNPECPLCRQPASPQSIVCLYQYA 1095
            AGKQTLGQEYC I L      GG  S+P S    ++ YT LRV VPYLQ  R+REGWHGLRSLRDPFG GG+A +L  A XXXXXXXX A++PPV I VS +        R            XXX                                  FL R L+  RR RPA+SG+LEWALR+HLA FYFDGR+AN+AMR  GARLAY R + E  R RYA+LG+  L+QA  EAA+A A            A SE  PR  EG    G G    D             +  G      RVPA T  +TPAD ALFP SRRRCSLCMS R+N AATPCGHLFCWEC++GWCQTNPECPLCRQP +PQSIVCLYQYA
Sbjct:   71 AGKQTLGQEYCGIDLVPSGRGGGRESSPLSR-RPLQAYTFLRVAVPYLQE-RMREGWHGLRSLRDPFGSGGAATSL--AAXXXXXXXXXAVAPPVGIAVSSVSGGTAAADRAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-XXXAFLRRVLAWARRRRPAMSGVLEWALRLHLAAFYFDGRFANVAMRAVGARLAYARPEQEAARTRYAVLGLLLLLQAAAEAATASAETAERWRATARAALSESFPRSTEGEAVCGEGGGPSDLG-----------EGVGDTALPPRVPAATRGRTPADVALFPPSRRRCSLCMSSRENVAATPCGHLFCWECIVGWCQTNPECPLCRQPVAPQSIVCLYQYA 433          
BLAST of mRNA_H-elongata_contig52972.12623.1 vs. uniprot
Match: A0A836CLL0_9STRA (Peroxisome biogenesis factor 10 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLL0_9STRA)

HSP 1 Score: 175 bits (443), Expect = 8.880e-48
Identity = 128/364 (35.16%), Postives = 165/364 (45.33%), Query Frame = 1
Query:    1 AGKQTLGQEYCDIGLSMGGAVSTPFSPGSSVRFYTLLRVLVPYLQRLRLREGWHGLRSLRDPFGRGGSAAALGVAXXXXXXXXXVALSPPVAIVSMLDHDALPETRVDVRDDAEPEGEXXXAGAPALTSSRRPQTDFGSGGRCRLRRRWFRAAIVFLGRALSSVRRNRPAISGMLEWALRVHLAVFYFDGRYANLAMRVAGARLAYTRAKDEPRARYAILGVFSLVQAVGEAASACAXXXXARSERDPRHLEGRRDFGRGNEAVDAPGEEKSVRDAGRQADGLAKASSRVPAVTPEKTPADAALFPRSRRRCSLCMSPRQNAAATPCGHLFCWECVIGWCQTNPECPLCRQPASPQSIVCLYQY 1092
            AG+QT+GQEYCD+  S  G    P S  +    Y+L+ V  PYL   RL  GW  LR +R+PF R   AA +  A                A       +A   T V     A P+ +     A ++ S+                                         + +L W    HLA+F+ +GRYAN AMR A  RL Y RA+D P  RY ILGV  L +   E  +  A           R L G          + + G+         +A+    AS RVP ++   T A A      R RC+LCM PR++ AAT CGHLFCWEC++GWC+TNPECPLCRQPA PQSIVC+Y Y
Sbjct:   50 AGRQTVGQEYCDLMFSRNGLCDVPLSARAG---YSLVEVCWPYLLS-RLDTGWPRLRDIREPFDRHAEAARIRDAMRAHAAESESQQPTSAA-------EAAAVTPV-----APPDNDGSRDAAYSVCSATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAARVLRWLGAFHLALFFLNGRYANAAMRAARVRLMYNRAQDAPLPRYTILGVLMLARFGFEFGAQAA-----------RKLHG---------IIFSDGDGSGGXXXXXKAN---LASQRVPGLSGSDTEAAA-----RRHRCALCMGPREHTAATLCGHLFCWECIVGWCETNPECPLCRQPAEPQSIVCVYHY 369          
BLAST of mRNA_H-elongata_contig52972.12623.1 vs. uniprot
Match: A0A485LD12_9STRA (Aste57867_19380 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LD12_9STRA)

HSP 1 Score: 129 bits (325), Expect = 1.370e-30
Identity = 70/200 (35.00%), Postives = 105/200 (52.50%), Query Frame = 1
Query:  496 RNRPAISGMLEWALRVHLAVFYFDGRYANLAMRVAGARLAYTRAKDEPRARYAILGVFSLVQAVGEAASACAXXXXARSERDPRHLEGRRDFGRGNEAVDAPGEEKSVRDAGRQADGLAKASSRVPA-VTPEKTPADAALFPRSRRRCSLCMSPRQNAAATPCGHLFCWECVIGWCQTNPECPLCRQPASPQSIVCLYQY 1092
            R   ++ G++    + HLA+F+ +GRY +++ RVAG R   ++   +P A++AILG   LV+A+    SAC     A                                   R   G   A+SR  A V  ++ PAD  + P+  ++C+LC++ R + + TPCGH+FCWEC++GWCQ+ PECPLCRQ   PQ + CLY Y
Sbjct:  219 RTGLSVDGIVHGLAQCHLALFFLNGRYFHISKRVAGLRYVLSQRLSQPFAQFAILGYMILVRAM---ISACLALPPAM----------------------------------RCLLGHQVANSRPAAMVEGKRVPADTGVSPKQTKKCALCLTERSHPSMTPCGHVFCWECIVGWCQSKPECPLCRQVVLPQDVKCLYNY 381          
BLAST of mRNA_H-elongata_contig52972.12623.1 vs. uniprot
Match: T0Q7Z6_SAPDV (RING-type domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=T0Q7Z6_SAPDV)

HSP 1 Score: 126 bits (316), Expect = 1.640e-29
Identity = 72/202 (35.64%), Postives = 101/202 (50.00%), Query Frame = 1
Query:  496 RNRPAISGMLEWALRVHLAVFYFDGRYANLAMRVAGARLAYTRAKDEPRARYAILGVFSLVQAVGEAA---SACAXXXXARSERDPRHLEGRRDFGRGNEAVDAPGEEKSVRDAGRQADGLAKASSRVPAVTPEKTPADAALFPRSRRRCSLCMSPRQNAAATPCGHLFCWECVIGWCQTNPECPLCRQPASPQSIVCLYQY 1092
            R   +++  ++ A+ VHLA+FY  GRY ++A RVAG R   TR  D P A+++ILG   L++    +    SAC        E  PR L+  R           P +E                    P VT             ++R+C+LC++ R + A TPCGH+FCWEC++GWCQ  PECPLCRQ   PQ + C+Y Y
Sbjct:  196 RTGTSVTTWMQAAVAVHLALFYLHGRYFDMAKRVAGIRYILTRKLDAPHAQFSILGYLILLRLALSSVLGLSACLRTLLG-VEVAPRRLDQHR----------VPSDESR------------------PTVT-------------AQRKCALCLTERSHPAMTPCGHVFCWECIVGWCQNKPECPLCRQLVQPQDVKCIYSY 355          
BLAST of mRNA_H-elongata_contig52972.12623.1 vs. uniprot
Match: A0A328E4H4_9ASTE (RING-type domain-containing protein n=3 Tax=Cuscuta sect. Cleistogrammica TaxID=1824901 RepID=A0A328E4H4_9ASTE)

HSP 1 Score: 124 bits (311), Expect = 1.690e-28
Identity = 113/372 (30.38%), Postives = 156/372 (41.94%), Query Frame = 1
Query:    1 AGKQTLGQEYCDIGLSMGGAVSTPFSPGSSVRFYTLLRVLVPYL-QRLRLREGWHGLRSLRDPFGR----GGSAAALGVAXXXXXXXXXVALSPPVAIVSMLDHDALPETRVDVRDDAEPEGEXXXAGAPALTSSRRPQTDFGSGGRCRLRRRWFRAA----IVFLGRALSSVRRNRPAISGMLEWALRVHLAVFYFDGRYANLAMRVAGARLAYTRAKDEPRARYAILGVFSLVQAVGEAASACAXXXXARSERDPRHLE-GRRDFGRGNEAVDAPGEEKSVRDAGRQADGLAKASSRVPAVTPEKTPADAALFPRSRRRCSLCMSPRQNAAATPCGHLFCWECVIGWCQTNPECPLCRQPASPQSIVCLY 1086
            AGKQTLG+EYCDI   + G    P +P     F    +  VPYL +R   R    G+ +L DPF      GG++A+ G                                RV+    +E             + S R    F S  + +LRR W  A      VF            P    +L+  +R +L  FYF+G Y + + R +G R  +   +   R RY ILGVF L+Q    AA        +      +    G   +  GN  V    EE ++   G +       SS     T EK    +      + +C+LC+S RQ+  ATPCGH+FCW C++ WC   PECPLCR PA+  S+VCLY
Sbjct:   91 AGKQTLGEEYCDI-TQVAGPFGVPPTPARRALFI-FYQTTVPYLAERFSSRLASEGI-TLDDPFDDDYSFGGASASSG--------------------------------RVEASTTSE-----------TTSFSSRESLSFFSRLKAKLRRCWLHAVQRWPSVF------------PLAREILQLIIRANLMFFYFEGLYYHSSKRASGIRYVFIGKQANQRPRYQILGVFLLIQLCVLAAERLRRSSLSSLSASVQQTPLGTYQYSPGN-CVPILDEEGNLITGGSEKGSYVFQSS----STSEKQSQTS-----GQSKCTLCLSNRQHPTATPCGHVFCWNCIMEWCNEKPECPLCRSPATHSSLVCLY 394          
BLAST of mRNA_H-elongata_contig52972.12623.1 vs. uniprot
Match: A0A2Z4HN89_IPOPC (Peroxisome biogenesis factor 10 n=4 Tax=Ipomoea TaxID=4119 RepID=A0A2Z4HN89_IPOPC)

HSP 1 Score: 119 bits (297), Expect = 1.610e-26
Identity = 110/368 (29.89%), Postives = 157/368 (42.66%), Query Frame = 1
Query:    1 AGKQTLGQEYCDIGLSMGGAVSTPFSPGSSVRFYTLLRVLVPYL-QRLRLREGWHGLRSLRDPFGRGGSAAALGVAXXXXXXXXXVALSPPVAIVSMLDHDALPETRVDVRDDAEPEGEXXXAGAPALTSSRRPQTDFGSGGRCRLRRRWFRAAIVFLGRALSSVRRNRPAISGMLEWALRVHLAVFYFDGRYANLAMRVAGARLAYTRAKDEPRARYAILGVFSLVQ-----AVGEAASACAXXXXARSERDPRHLEGRRDFGRGNEAVDAPGEEKSVRDAGRQADGLAKASSRVPAVTPEKTPADAALFPRSRRRCSLCMSPRQNAAATPCGHLFCWECVIGWCQTNPECPLCRQPASPQSIVCLY 1086
            AGKQTLG+EYCDI   + G    P +P     F    +  VPYL +R+  R    G+ +L DPF                        S P ++ S L       T  ++                A +S+ R      S  + ++R  W  A   +      SV    P    +L+  +R +L  FYF+G Y +L+ R +G R  +       R RY ILG F LVQ     A G    +      A +++ P     +   GRG   V    EE ++  A  +           P+ T E   +  +       +C+LC+S RQ+  ATPCGH+FCW C++ WC   PECPLCR PA+  S+VCLY
Sbjct:   94 AGKQTLGEEYCDI-TQVAGPYGLPPTPARRALFI-FYQTAVPYLAERVSSRIASQGI-TLDDPFDD----------------------SYPFSVASELSSRVEASTTTEI----------------ASSSTSRAHPSVLSRFKTKIRECWLYAVQRW-----PSV---LPLAREILQLVIRANLMFFYFEGLYYHLSKRASGIRYVFIGKPTNQRPRYQILGFFLLVQLCILAAEGLRRRSNLSSISASAQQTPFGTY-QTSSGRG---VPVLNEEGNLITADSEKGSFVS----EPSSTSESQASGLS-------KCTLCLSSRQHPTATPCGHVFCWNCIMEWCNEKPECPLCRSPATHSSLVCLY 397          
BLAST of mRNA_H-elongata_contig52972.12623.1 vs. uniprot
Match: UPI00109F5807 (peroxisome biogenesis factor 10 isoform X1 n=2 Tax=Dendrobium catenatum TaxID=906689 RepID=UPI00109F5807)

HSP 1 Score: 118 bits (295), Expect = 3.290e-26
Identity = 108/368 (29.35%), Postives = 152/368 (41.30%), Query Frame = 1
Query:    1 AGKQTLGQEYCDIGLSMGGAVSTPFSPGSSVRFYTLLRVLVPYL-QRLRLREGWHGLRSLRDPFGRGGSAAALGVAXXXXXXXXXVALSPPVAIVSMLDHDALPETRVDVRDDAEPE--GEXXXAGAPALTSSRRPQTDFGSGGRCRLRRRWFRAAIVFLGRALSSVRRNRPAISGMLEWALRVHLAVFYFDGRYANLAMRVAGARLAYTRAKDEPRARYAILGVFSLVQAVGEAASACAXXXXAR--SERDPRHLEGRRDF-GRGNEAVDAPGEEKSVRDAGRQADGLAKASSRVPAVTPEKTPADAALFPRSRRRCSLCMSPRQNAAATPCGHLFCWECVIGWCQTNPECPLCRQPASPQSIVCLY 1086
            AG+QTLG+EYCD+   +  +   P +P   + F    + +VPYL +RL  R   HG+      FG                                     L E+    R+ A+P   G     G P    S+  +   G          WF A   +            P      + ALR +L  FYF+G Y +++ R AG R  +       R RY ILG+F LVQ    AA        +   S   P  L G +   GRG   ++  G    + DA      + K+S    ++T E         P S  +C+LC+S RQ+  AT CGH+FCW C++ WC   PECPLCR P +  S+VC+Y
Sbjct:  103 AGQQTLGEEYCDLS-QVADSYGLPPTPARRIVFI-FYQTVVPYLAERLSSRMTAHGMTMDDFQFGE------------------------------------LHESNYLRRNQAQPSSSGSSSSRGLPTSAISKMKEKFVGL---------WFWAVQKWP--------MVLPFAREAAQLALRANLMFFYFEGLYYHISKRAAGIRYVFIGKPSNQRLRYQILGIFLLVQLCILAAEGLRRSNFSSIASSVHPSSLGGHQSSTGRGLPVLNEDG--NLITDA-----AIKKSSLGSDSLTTESQ------VPVSISKCTLCLSTRQHPTATTCGHVFCWNCIMEWCNEKPECPLCRTPITHSSLVCIY 402          
BLAST of mRNA_H-elongata_contig52972.12623.1 vs. uniprot
Match: A0A5D6XGT1_9STRA (RING-type domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XGT1_9STRA)

HSP 1 Score: 117 bits (293), Expect = 5.990e-26
Identity = 75/201 (37.31%), Postives = 105/201 (52.24%), Query Frame = 1
Query:  508 AISGMLEWALRVHLAVFYFDGRYANLAMRVAGARLAYTRAKDEPRARYAILGVFSLVQAVGEAASACAXXXXARSERDPRHLEGRRDFGRGNEAVDAPGEEKSVRDAGRQADGLAKASSRVP-AVTPEKTPAD----AALFPRSRRRCSLCMSPRQNAAATPCGHLFCWECVIGWCQTNP-ECPLCRQPASPQSIVCLYQY 1092
            +++ +  WA ++HLA FY   +Y +L+ R++  +  + R+   P    ++LG    ++    A           ++R  RH             V    ++K V  AG      A  S RVP AVT     +D    AAL  RSRR+C+LC+  R + AATPCGH+FCWEC++GWCQ N  ECPLCRQ A PQ I CLY Y
Sbjct:  224 SVACVKAWASQLHLASFYVSAKYFHLSKRLSNVQYVFVRSDLTPGINLSLLGYLMFLRLFVTAV--------VETKRLRRH-------------VKQDAKQKLVARAGLNPAVYAH-SDRVPTAVTVAAGASDGAEAAALSRRSRRKCALCLGDRTSPAATPCGHVFCWECIVGWCQKNKAECPLCRQEAHPQQIKCLYNY 402          
BLAST of mRNA_H-elongata_contig52972.12623.1 vs. uniprot
Match: A0A6I9TKZ1_SESIN (peroxisome biogenesis factor 10 isoform X1 n=2 Tax=Lamiales TaxID=4143 RepID=A0A6I9TKZ1_SESIN)

HSP 1 Score: 115 bits (289), Expect = 2.010e-25
Identity = 109/369 (29.54%), Postives = 153/369 (41.46%), Query Frame = 1
Query:    1 AGKQTLGQEYCDIGLSMGGAVSTPFSPGSSVRFYTLLRVLVPYL-QRLRLREGWHGLRSLRDPFGRGGSAAALGVAXXXXXXXXXVALSPPVAIVSMLDHDALPETRVDVRDDAEPEGEXXXAGAPALTSSRRPQTDFGSGGRCRLRRRWFRAAIVFLGRALSSVRRNRPAISGMLEW---ALRVHLAVFYFDGRYANLAMRVAGARLAYTRAKDEPRARYAILGVFSLVQA---VGEAASACAXXXXARSERDPRHLEGRRDFGRGNEAVDAPGEEKSVRDAGRQADGLAKASSRVPAVTPEKTPADAALFPRSRRRCSLCMSPRQNAAATPCGHLFCWECVIGWCQTNPECPLCRQPASPQSIVCLY 1086
            AGKQTLG+EYCDI   + G    P +P     F    +   PY+ +R+  R    G+ ++ D                             +    ++D++ +  +++     AE       +G P    SR                   +A I   G  L +VRR    +    E     LR +L  FYF+G Y +L+ R AG R  +       R RY ILGVF LVQ      E          A S +   H   +   GRG   ++  G      D+G+        SS V   TP      + +      +C+LC+S RQN  ATPCGH+FCW C++ WC   PECPLCR PA+  S+VCLY
Sbjct:   93 AGKQTLGEEYCDI-TQVAGPYGLPPTPARRSLFI-FYQTAFPYIAERISSRIASQGI-TMAD-----------------------------LLSDDIIDNETISNSQIQSSASAEMSSSFN-SGVPLSALSR------------------LKARIT--GVWLYAVRRWPSVLPFARECFMLVLRANLMFFYFEGLYYHLSKRAAGIRYVFIGKPTNQRPRYQILGVFLLVQLCIIAAEGLRRSNLSTFATSFQQTSHGAYQTSAGRGLPVLNEEGN-LITEDSGK--------SSWVHESTPTSESQASGVS-----KCTLCLSNRQNPTATPCGHVFCWNCIMEWCNEKPECPLCRSPATHSSLVCLY 394          
BLAST of mRNA_H-elongata_contig52972.12623.1 vs. uniprot
Match: W4GFD0_9STRA (RING-type domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GFD0_9STRA)

HSP 1 Score: 112 bits (281), Expect = 2.810e-25
Identity = 69/202 (34.16%), Postives = 106/202 (52.48%), Query Frame = 1
Query:  508 AISGMLEWALRVHLAVFYFDGRYANLAMRVAGAR--LAYTRAKDEPRARYAILGVFSLVQAVGEAASACAXXXXARSERDPRHLEGRRDFGRGNEAVDAPGEEKSVRDAGRQADGLAKASSRVPA----VTPEKTPADA-ALFPRSRRRCSLCMSPRQNAAATPCGHLFCWECVIGWCQTNPECPLCRQPASPQSIVCLYQY 1092
            A+SG+L+    +H+A+F+  G Y +L+ R+AG R  L+Y  + +   A+++ILG   L++A   A                              +   P   ++V    R A   A ++ RVP     +TP   P    +  P+  ++C+LC++ R + +ATPCGHLFCW+C++GWCQ+ PECPLCRQ   PQ I CLY Y
Sbjct:  102 AVSGLLQ----LHVALFFLRGTYLHLSKRMAGIRYILSYRPSPNTSFAQFSILGYMILIRAALTA------------------------------SFTLPTIVRAVMGT-RLAPPSAASTHRVPCLAVPITPNPPPRQLPSSSPQRIKKCALCLAERSHPSATPCGHLFCWDCIVGWCQSKPECPLCRQLVLPQDIKCLYNY 268          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig52972.12623.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JU68_9PHAE6.800e-9251.72RING-type domain-containing protein n=2 Tax=Ectoca... [more]
A0A836CLL0_9STRA8.880e-4835.16Peroxisome biogenesis factor 10 n=1 Tax=Tribonema ... [more]
A0A485LD12_9STRA1.370e-3035.00Aste57867_19380 protein n=1 Tax=Aphanomyces stella... [more]
T0Q7Z6_SAPDV1.640e-2935.64RING-type domain-containing protein n=2 Tax=Saprol... [more]
A0A328E4H4_9ASTE1.690e-2830.38RING-type domain-containing protein n=3 Tax=Cuscut... [more]
A0A2Z4HN89_IPOPC1.610e-2629.89Peroxisome biogenesis factor 10 n=4 Tax=Ipomoea Ta... [more]
UPI00109F58073.290e-2629.35peroxisome biogenesis factor 10 isoform X1 n=2 Tax... [more]
A0A5D6XGT1_9STRA5.990e-2637.31RING-type domain-containing protein n=1 Tax=Pythiu... [more]
A0A6I9TKZ1_SESIN2.010e-2529.54peroxisome biogenesis factor 10 isoform X1 n=2 Tax... [more]
W4GFD0_9STRA2.810e-2534.16RING-type domain-containing protein n=1 Tax=Aphano... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig52972contigH-elongata_contig52972:354..2723 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score298.5
Seed ortholog evalue4.2e-78
Seed eggNOG ortholog2880.D8LAW2
Preferred namePEX10
KEGG koko:K13346
KEGG TC3.A.20.1
KEGG Pathwayko04146,map04146
GOsGO:0000003,GO:0000038,GO:0000209,GO:0000280,GO:0000910,GO:0003006,GO:0003674,GO:0003824,GO:0004842,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005777,GO:0005778,GO:0005779,GO:0005829,GO:0006082,GO:0006464,GO:0006513,GO:0006605,GO:0006625,GO:0006629,GO:0006631,GO:0006635,GO:0006807,GO:0006810,GO:0006886,GO:0006996,GO:0007031,GO:0007049,GO:0007112,GO:0007140,GO:0007275,GO:0007276,GO:0007281,GO:0007283,GO:0007285,GO:0007286,GO:0008022,GO:0008104,GO:0008150,GO:0008152,GO:0008270,GO:0009056,GO:0009062,GO:0009790,GO:0009791,GO:0009793,GO:0009853,GO:0009987,GO:0010154,GO:0010381,GO:0015031,GO:0015833,GO:0015919,GO:0016020,GO:0016021,GO:0016042,GO:0016043,GO:0016049,GO:0016054,GO:0016558,GO:0016567,GO:0016740,GO:0017038,GO:0019395,GO:0019538,GO:0019752,GO:0019787,GO:0019953,GO:0022402,GO:0022406,GO:0022412,GO:0022414,GO:0030154,GO:0030258,GO:0031090,GO:0031224,GO:0031231,GO:0031300,GO:0031301,GO:0031903,GO:0032446,GO:0032501,GO:0032502,GO:0032504,GO:0032787,GO:0032991,GO:0033036,GO:0033206,GO:0033365,GO:0034440,GO:0034613,GO:0036211,GO:0040007,GO:0042579,GO:0042760,GO:0042886,GO:0043094,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043436,GO:0043574,GO:0044237,GO:0044238,GO:0044242,GO:0044248,GO:0044255,GO:0044260,GO:0044267,GO:0044281,GO:0044282,GO:0044422,GO:0044424,GO:0044425,GO:0044438,GO:0044439,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0044743,GO:0045184,GO:0046395,GO:0046872,GO:0046907,GO:0046914,GO:0048137,GO:0048232,GO:0048285,GO:0048316,GO:0048468,GO:0048515,GO:0048588,GO:0048589,GO:0048608,GO:0048609,GO:0048731,GO:0048856,GO:0048869,GO:0051179,GO:0051234,GO:0051301,GO:0051321,GO:0051640,GO:0051641,GO:0051649,GO:0051704,GO:0055085,GO:0055114,GO:0061458,GO:0061640,GO:0065002,GO:0070647,GO:0070727,GO:0071702,GO:0071704,GO:0071705,GO:0071806,GO:0071840,GO:0072329,GO:0072594,GO:0072662,GO:0072663,GO:0098588,GO:0098805,GO:0140013,GO:0140056,GO:0140096,GO:1901564,GO:1901575,GO:1903046,GO:1990351,GO:1990415,GO:1990429
EggNOG free text desc.cAMP binding
EggNOG OGsCOG5574@1,KOG0317@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04121
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionZinc finger, RING/FYVE/PHD-type
Ec32 orthologEc-27_006210.1
Exons3
Model size1098
Cds size1098
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig52972.12623.1prot_H-elongata_contig52972.12623.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig52972 354..2723 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930864.7967825-CDS-H-elongata_contig52972:353..4881622930864.7967825-CDS-H-elongata_contig52972:353..488Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52972 354..488 +
1691679603.1850104-CDS-H-elongata_contig52972:353..4881691679603.1850104-CDS-H-elongata_contig52972:353..488Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52972 354..488 +
1622930864.8159714-CDS-H-elongata_contig52972:1352..20721622930864.8159714-CDS-H-elongata_contig52972:1352..2072Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52972 1353..2072 +
1691679603.196014-CDS-H-elongata_contig52972:1352..20721691679603.196014-CDS-H-elongata_contig52972:1352..2072Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52972 1353..2072 +
1622930864.8328218-CDS-H-elongata_contig52972:2480..27231622930864.8328218-CDS-H-elongata_contig52972:2480..2723Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52972 2481..2723 +
1691679603.2035577-CDS-H-elongata_contig52972:2480..27231691679603.2035577-CDS-H-elongata_contig52972:2480..2723Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52972 2481..2723 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig52972.12623.1

>prot_H-elongata_contig52972.12623.1 ID=prot_H-elongata_contig52972.12623.1|Name=mRNA_H-elongata_contig52972.12623.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=366bp
AGKQTLGQEYCDIGLSMGGAVSTPFSPGSSVRFYTLLRVLVPYLQRLRLR
EGWHGLRSLRDPFGRGGSAAALGVARARARARARVALSPPVAIVSMLDHD
ALPETRVDVRDDAEPEGEGRGAGAPALTSSRRPQTDFGSGGRCRLRRRWF
RAAIVFLGRALSSVRRNRPAISGMLEWALRVHLAVFYFDGRYANLAMRVA
GARLAYTRAKDEPRARYAILGVFSLVQAVGEAASACAAAAAARSERDPRH
LEGRRDFGRGNEAVDAPGEEKSVRDAGRQADGLAKASSRVPAVTPEKTPA
DAALFPRSRRRCSLCMSPRQNAAATPCGHLFCWECVIGWCQTNPECPLCR
QPASPQSIVCLYQYA*
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mRNA from alignment at H-elongata_contig52972:354..2723+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig52972.12623.1 ID=mRNA_H-elongata_contig52972.12623.1|Name=mRNA_H-elongata_contig52972.12623.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2370bp|location=Sequence derived from alignment at H-elongata_contig52972:354..2723+ (Himanthalia elongata Himel1 dioecious)
GCAGGAAAGCAGACACTGGGGCAGGAATACTGCGACATCGGCCTCTCGAT GGGGGGGGCAGTCTCGACCCCGTTTTCTCCTGGGTCATCCGTGCGCTTCT ACACCTTGCTGCGAGTCCTCGTGCCCTACTTGCAGGTACTGTACTATAAC CGATACTATAACCGATATTTTAAAATCCCACTATCTGCCGATGGGGTATA CCGATACCACTCAACGTGTACTATTATTAAAATAGGTTACAAGTTCCACG TCTTAAACCACGTCTTCCATCTTGCCGTTGACCGTCAAGAAGCGACCGAC CCCTTTTTCCCTCGCGCCTTTTTGTTATTGCGATAATGCGCTCCTAACTC TAGGCCCCATGAACCACCGTTGAGCTTTGTGGACTCATGTCCTCATTCTT TCCGCTAGAACAGTTTTCCCCGCCCCCGAGATTCGAGCTCAGTGTTGTTG CACAGCTGATTGATCGTGCAGGTTGCTACCGGTTAGAGGCGGCGGGAGAG GGAGCGATGCCCTCACCACCGAACCTTACCATTTCACAGTATGCAGCAGC TGCCTGCTGCGGTTGCGGCTGCTTCCATTGCTGGGCAGGCGTCCAACCGA CTAAACTAACCTAATAAATAGCGCTCTGGACATAGAAGCAATGAATCAAA CAAACGATACATCCAGCTTTGTGTTTGGTGGGCGGGAACAGTCTAAAGCC AGTTGGGTGCCTGGAGGATGCTGAGTGGCGAACAGCATCCGCGGCGTGAG GGAAGAATTTTAGTTTTTACTCACCCGCTTCGCAACTAAATGCTTTGCAG CTTTTATCGAAGCGAAAATGTTGTCGAGAGCCTTTCAACGAATTATCGCG GCCGTGAAGCTGTCTGTGGTTCTTAAGCTGATACATACCGTTGATTTTGA TTTTTCTCTCCCGACAACAGCGACCCCGACCCTCTTCGAAACCCTATCTT ACGTATATTTCTTATCTCCCCATTCTTCATCGCCGTTCTTTCCCAGGAGC GTCTTCGTCTTCGGGAAGGGTGGCATGGACTCCGCTCCTTGAGGGACCCT TTTGGTCGCGGAGGCTCGGCGGCGGCGCTCGGCGTGGCGAGGGCCAGAGC GCGCGCGCGGGCACGGGTAGCCCTATCGCCGCCCGTCGCCATTGTCTCTA TGTTGGATCACGACGCTTTACCCGAGACGAGGGTGGATGTTCGCGATGAC GCTGAACCTGAGGGTGAAGGTCGGGGCGCCGGGGCGCCTGCGTTGACCTC TTCCCGCCGTCCCCAGACCGACTTCGGCAGCGGCGGACGTTGTCGCCTCC GCCGCCGTTGGTTTCGGGCCGCTATTGTTTTCCTCGGACGAGCCTTGTCG TCGGTACGCCGAAATCGCCCCGCCATCTCCGGCATGTTGGAGTGGGCCCT GAGGGTACATCTGGCAGTTTTTTACTTTGACGGGCGATACGCGAATCTCG CCATGAGAGTCGCTGGGGCCAGACTCGCGTACACCCGTGCGAAGGACGAA CCGCGCGCTAGGTACGCGATCCTGGGGGTGTTTTCGCTGGTGCAGGCGGT GGGAGAGGCAGCTTCGGCGTGCGCGGCGGCGGCAGCGGCTAGGTCGGAAC GAGATCCACGACATCTCGAGGGGAGGAGAGACTTTGGCCGAGGGAATGAA GCGGTAGATGCTCCCGGCGAAGAGAAGTCGGTGAGGGACGCGGGGCGCCA AGCAGACGGGCTGGCAAAGGTTGGGTTCCTCTTTGATCTTGGCTTGCGTG CCGACTGCAGTGCAGTAGCCACCTGTACAGGGAGGTACAGCGAGACACAC GCCAGAGCGTCGAATCCATTGCTGTCATCTTACCTTAGCTCGTGCTTCGC ACGCCGGGCCCGGCACCACACACATATGGTGCGTGGCTACAGATGGATCT GGACGTACGCGTGTAAGCGTCCTTGACGAATGAATAAAGGGCAGTAGCAG TGTTCTGGGTTTTGCGTTTCCAGAGCAGGAAATCGAAAGGGGAAAGGAGA TTCCTTGTCTGATGTATTTTGCTCCAGCGTGGTCAATGGCCTAACAGCTA CAGCATGCAAAACTTGAATTCCCCCCCGCCCCTCCCTCCCCTTTCATTAT TTGGCCACTTGGCAAAACATCGCACAGGCATCATCCCGGGTGCCCGCGGT CACGCCGGAGAAAACGCCCGCGGACGCGGCGCTGTTTCCCCGTTCCCGCC GCCGCTGCTCCCTGTGCATGTCACCCCGGCAGAACGCAGCGGCCACTCCG TGTGGCCACCTCTTCTGCTGGGAGTGTGTCATTGGCTGGTGCCAGACGAA TCCGGAGTGCCCGCTGTGCCGTCAGCCAGCTTCGCCGCAGTCGATCGTGT GCCTGTATCAGTATGCTTAA
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Coding sequence (CDS) from alignment at H-elongata_contig52972:354..2723+

>mRNA_H-elongata_contig52972.12623.1 ID=mRNA_H-elongata_contig52972.12623.1|Name=mRNA_H-elongata_contig52972.12623.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2196bp|location=Sequence derived from alignment at H-elongata_contig52972:354..2723+ (Himanthalia elongata Himel1 dioecious)
GCAGGAAAGCAGACACTGGGGCAGGAATACTGCGACATCGGCCTCTCGAT
GGGGGGGGCAGTCTCGACCCCGTTTTCTCCTGGGTCATCCGTGCGCTTCT
ACACCTTGCTGCGAGTCCTCGTGCCCTACTTGCAGGCAGGAAAGCAGACA
CTGGGGCAGGAATACTGCGACATCGGCCTCTCGATGGGGGGGGCAGTCTC
GACCCCGTTTTCTCCTGGGTCATCCGTGCGCTTCTACACCTTGCTGCGAG
TCCTCGTGCCCTACTTGCAGCGTCTTCGTCTTCGGGAAGGGTGGCATGGA
CTCCGCTCCTTGAGGGACCCTTTTGGTCGCGGAGGCTCGGCGGCGGCGCT
CGGCGTGGCGAGGGCCAGAGCGCGCGCGCGGGCACGGGTAGCCCTATCGC
CGCCCGTCGCCATTGTCTCTATGTTGGATCACGACGCTTTACCCGAGACG
AGGGTGGATGTTCGCGATGACGCTGAACCTGAGGGTGAAGGTCGGGGCGC
CGGGGCGCCTGCGTTGACCTCTTCCCGCCGTCCCCAGACCGACTTCGGCA
GCGGCGGACGTTGTCGCCTCCGCCGCCGTTGGTTTCGGGCCGCTATTGTT
TTCCTCGGACGAGCCTTGTCGTCGGTACGCCGAAATCGCCCCGCCATCTC
CGGCATGTTGGAGTGGGCCCTGAGGGTACATCTGGCAGTTTTTTACTTTG
ACGGGCGATACGCGAATCTCGCCATGAGAGTCGCTGGGGCCAGACTCGCG
TACACCCGTGCGAAGGACGAACCGCGCGCTAGGTACGCGATCCTGGGGGT
GTTTTCGCTGGTGCAGGCGGTGGGAGAGGCAGCTTCGGCGTGCGCGGCGG
CGGCAGCGGCTAGGTCGGAACGAGATCCACGACATCTCGAGGGGAGGAGA
GACTTTGGCCGAGGGAATGAAGCGGTAGATGCTCCCGGCGAAGAGAAGTC
GGTGAGGGACGCGGGGCGCCAAGCAGACGGGCTGGCAAAGCGTCTTCGTC
TTCGGGAAGGGTGGCATGGACTCCGCTCCTTGAGGGACCCTTTTGGTCGC
GGAGGCTCGGCGGCGGCGCTCGGCGTGGCGAGGGCCAGAGCGCGCGCGCG
GGCACGGGTAGCCCTATCGCCGCCCGTCGCCATTGTCTCTATGTTGGATC
ACGACGCTTTACCCGAGACGAGGGTGGATGTTCGCGATGACGCTGAACCT
GAGGGTGAAGGTCGGGGCGCCGGGGCGCCTGCGTTGACCTCTTCCCGCCG
TCCCCAGACCGACTTCGGCAGCGGCGGACGTTGTCGCCTCCGCCGCCGTT
GGTTTCGGGCCGCTATTGTTTTCCTCGGACGAGCCTTGTCGTCGGTACGC
CGAAATCGCCCCGCCATCTCCGGCATGTTGGAGTGGGCCCTGAGGGTACA
TCTGGCAGTTTTTTACTTTGACGGGCGATACGCGAATCTCGCCATGAGAG
TCGCTGGGGCCAGACTCGCGTACACCCGTGCGAAGGACGAACCGCGCGCT
AGGTACGCGATCCTGGGGGTGTTTTCGCTGGTGCAGGCGGTGGGAGAGGC
AGCTTCGGCGTGCGCGGCGGCGGCAGCGGCTAGGTCGGAACGAGATCCAC
GACATCTCGAGGGGAGGAGAGACTTTGGCCGAGGGAATGAAGCGGTAGAT
GCTCCCGGCGAAGAGAAGTCGGTGAGGGACGCGGGGCGCCAAGCAGACGG
GCTGGCAAAGGCATCATCCCGGGTGCCCGCGGTCACGCCGGAGAAAACGC
CCGCGGACGCGGCGCTGTTTCCCCGTTCCCGCCGCCGCTGCTCCCTGTGC
ATGTCACCCCGGCAGAACGCAGCGGCCACTCCGTGTGGCCACCTCTTCTG
CTGGGAGTGTGTCATTGGCTGGTGCCAGACGAATCCGGAGTGCCCGCTGT
GCCGTCAGCCAGCTTCGCCGCAGTCGATCGTGTGCCTGTATCAGTATGCT
TAAGCATCATCCCGGGTGCCCGCGGTCACGCCGGAGAAAACGCCCGCGGA
CGCGGCGCTGTTTCCCCGTTCCCGCCGCCGCTGCTCCCTGTGCATGTCAC
CCCGGCAGAACGCAGCGGCCACTCCGTGTGGCCACCTCTTCTGCTGGGAG
TGTGTCATTGGCTGGTGCCAGACGAATCCGGAGTGCCCGCTGTGCCGTCA
GCCAGCTTCGCCGCAGTCGATCGTGTGCCTGTATCAGTATGCTTAA
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