mRNA_H-elongata_contig52866.12607.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig52866.12607.1 vs. uniprot
Match: A0A6H5JWK8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWK8_9PHAE) HSP 1 Score: 121 bits (303), Expect = 2.920e-30 Identity = 64/137 (46.72%), Postives = 92/137 (67.15%), Query Frame = 1
Query: 1 LSAWTDADYDTCPDTRRSVSEGVVMMACGAISWFLRVQKVTAAASSESEYVALAEMVNELRFLRQVKAFMTPT-IDVTIKIHEDNEGAIKMAKNRLSSRRTGHVDIKHHIVRDAIDEGVVHIEYVRSGEQHADILMK 408
L + DADY + RRSVS GVVM A GAI+WF + QK +++++EYVA+A+M E+ FLR+V FM P + I ++EDNEGAI++AK+ +S+ + H+D++HH +R +DE V I +V S QHAD L K
Sbjct: 230 LITFADADYASRAADRRSVSGGVVMCAGGAIAWFSKTQKCVTLSTTQAEYVAMADMGKEILFLREVWRFMLPKELRPCIPLYEDNEGAIQIAKHPISNSNSKHIDVRHHFLRQLVDEKEVEIIHVASQYQHADFLTK 366
BLAST of mRNA_H-elongata_contig52866.12607.1 vs. uniprot
Match: A0A6H5KIL0_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIL0_9PHAE) HSP 1 Score: 122 bits (307), Expect = 8.770e-30 Identity = 65/137 (47.45%), Postives = 92/137 (67.15%), Query Frame = 1
Query: 1 LSAWTDADYDTCPDTRRSVSEGVVMMACGAISWFLRVQKVTAAASSESEYVALAEMVNELRFLRQVKAFMTPT-IDVTIKIHEDNEGAIKMAKNRLSSRRTGHVDIKHHIVRDAIDEGVVHIEYVRSGEQHADILMK 408
L + DADY + RRSVS GVVM A GAI+WF + QK +++++EYVA+A+M E+ FLRQV FM P + I ++EDNEGAI++AK+ +S+ + H+D++HH +R +DE V I +V S QHAD L K
Sbjct: 911 LITFVDADYASVAADRRSVSGGVVMCAGGAIAWFSKTQKCVTLSTTQAEYVAMADMGKEILFLRQVWRFMLPKELRPCIPLYEDNEGAIQIAKHPVSNSNSKHIDVRHHFLRQLVDEKEVEIIHVASQYQHADFLTK 1047
BLAST of mRNA_H-elongata_contig52866.12607.1 vs. uniprot
Match: A0A6H5JR13_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR13_9PHAE) HSP 1 Score: 122 bits (306), Expect = 1.150e-29 Identity = 65/137 (47.45%), Postives = 92/137 (67.15%), Query Frame = 1
Query: 1 LSAWTDADYDTCPDTRRSVSEGVVMMACGAISWFLRVQKVTAAASSESEYVALAEMVNELRFLRQVKAFMTPT-IDVTIKIHEDNEGAIKMAKNRLSSRRTGHVDIKHHIVRDAIDEGVVHIEYVRSGEQHADILMK 408
L + DADY + RRSVS GVVM A GAI+WF + QK +++++EYVA+A+M E+ FLRQV FM P + I ++EDNEGAI++AK+ +S+ + H+D++HH +R +DE V I +V S QHAD L K
Sbjct: 534 LITFADADYASRAADRRSVSGGVVMCAGGAIAWFSKTQKCVTLSTTQAEYVAMADMGKEILFLRQVWRFMLPKELRPCIPLYEDNEGAIQIAKHPISNSNSKHIDVRHHFLRQLVDEKEVEIIHVASQYQHADFLTK 670
BLAST of mRNA_H-elongata_contig52866.12607.1 vs. uniprot
Match: A0A6H5JRZ9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRZ9_9PHAE) HSP 1 Score: 120 bits (301), Expect = 1.160e-29 Identity = 64/137 (46.72%), Postives = 92/137 (67.15%), Query Frame = 1
Query: 1 LSAWTDADYDTCPDTRRSVSEGVVMMACGAISWFLRVQKVTAAASSESEYVALAEMVNELRFLRQVKAFMTPT-IDVTIKIHEDNEGAIKMAKNRLSSRRTGHVDIKHHIVRDAIDEGVVHIEYVRSGEQHADILMK 408
L + +ADY + RRSVS GVVM A GAI+WF + QK +++++EYVA+A+M E+ FLRQV FM P + I ++EDNEGAI++AK+ +S+ + H+D++HH +R +DE V I +V S QHAD L K
Sbjct: 282 LITFVNADYASRAADRRSVSGGVVMCAGGAIAWFSKTQKCVTLSTTQAEYVAMADMGKEILFLRQVWRFMLPKELRPCIPLYEDNEGAIQIAKHPISNSNSKHIDVRHHFLRQLVDEKEVEIIHVASQYQHADFLTK 418
BLAST of mRNA_H-elongata_contig52866.12607.1 vs. uniprot
Match: A0A6H5JWA6_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWA6_9PHAE) HSP 1 Score: 121 bits (304), Expect = 2.290e-29 Identity = 65/137 (47.45%), Postives = 91/137 (66.42%), Query Frame = 1
Query: 1 LSAWTDADYDTCPDTRRSVSEGVVMMACGAISWFLRVQKVTAAASSESEYVALAEMVNELRFLRQVKAFMTPT-IDVTIKIHEDNEGAIKMAKNRLSSRRTGHVDIKHHIVRDAIDEGVVHIEYVRSGEQHADILMK 408
L A+ DADY + RRSVS GVVM A GAI+WF + Q ++++SEYVA+A+M E+ FLRQV FM P + I ++EDNEGAI++AK+ +S + H+D++HH +R +DE V + +V S QHAD L K
Sbjct: 601 LIAFVDADYASRAADRRSVSGGVVMCAGGAIAWFSKTQTCVTLSTTQSEYVAMADMGKEILFLRQVWRFMLPKELRPCIPLYEDNEGAIQIAKHPISKSNSKHIDVRHHFLRQLVDEKEVELIHVASKYQHADFLTK 737
BLAST of mRNA_H-elongata_contig52866.12607.1 vs. uniprot
Match: A0A6H5L5J6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5J6_9PHAE) HSP 1 Score: 116 bits (291), Expect = 8.410e-28 Identity = 63/137 (45.99%), Postives = 90/137 (65.69%), Query Frame = 1
Query: 1 LSAWTDADYDTCPDTRRSVSEGVVMMACGAISWFLRVQKVTAAASSESEYVALAEMVNELRFLRQVKAFMTPT-IDVTIKIHEDNEGAIKMAKNRLSSRRTGHVDIKHHIVRDAIDEGVVHIEYVRSGEQHADILMK 408
L A+ DADY + RRSVS GVVM A GAI+WF + Q+ +++++EYVA+A+M + FLRQV FM P + +HEDNEGAI++AK+ +S+ + H+D++HH +R +DE V I + S QHAD L K
Sbjct: 415 LIAFVDADYASRAADRRSVSGGVVMCAGGAIAWFSKTQECVTLSTTQAEYVAMADMGKVILFLRQVWRFMLPKELRPCSPLHEDNEGAIQIAKHPISNSNSKHIDVRHHFLRQLVDEKEVDIIHGASKYQHADFLTK 551
BLAST of mRNA_H-elongata_contig52866.12607.1 vs. uniprot
Match: A0A6H5KKT4_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKT4_9PHAE) HSP 1 Score: 116 bits (291), Expect = 1.240e-27 Identity = 65/138 (47.10%), Postives = 92/138 (66.67%), Query Frame = 1
Query: 1 LSAWTDADYDTCPDTRRSVSEGVVMMACGAISWFLRVQKVTAAASSESEYVALAEMVNEL-RFLRQVKAFMTPT-IDVTIKIHEDNEGAIKMAKNRLSSRRTGHVDIKHHIVRDAIDEGVVHIEYVRSGEQHADILMK 408
L A+ DADY + RRSVS GVVM A GAI+WF + QK +++++EYVA+A+M E+ FLRQV FM P + I ++EDNEG IK+AK+ +S+ + H++++HH +R +DE V I +V S QHAD L K
Sbjct: 752 LIAFVDADYASRAAHRRSVSGGVVMYAGGAIAWFSKTQKCVTLSTTQAEYVAMADMGMEMILFLRQVWRFMLPKELRPCIPLYEDNEGTIKIAKHPISNSNSKHIEVRHHFLRQLVDEKEVEIIHVASKYQHADFLTK 889
BLAST of mRNA_H-elongata_contig52866.12607.1 vs. uniprot
Match: A0A6H5K307_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K307_9PHAE) HSP 1 Score: 115 bits (289), Expect = 1.910e-27 Identity = 63/137 (45.99%), Postives = 90/137 (65.69%), Query Frame = 1
Query: 1 LSAWTDADYDTCPDTRRSVSEGVVMMACGAISWFLRVQKVTAAASSESEYVALAEMVNELRFLRQVKAFMTPT-IDVTIKIHEDNEGAIKMAKNRLSSRRTGHVDIKHHIVRDAIDEGVVHIEYVRSGEQHADILMK 408
L + ADY + RRS S GVVM A GAI+WF + QK +++++EYVA+A+M E+ FLRQV FM P + I ++EDNEGAI++AK+ +S+ + H+D++HH +R +DE V I +V S QHAD L K
Sbjct: 463 LITFVYADYASRAADRRSESGGVVMCAGGAIAWFSKTQKCVTLSTTQAEYVAMADMGKEILFLRQVWRFMLPKELRPCIPLYEDNEGAIQIAKHPISNSNSKHIDVRHHFLRQLVDEKEVEIIHVASQYQHADSLTK 599
BLAST of mRNA_H-elongata_contig52866.12607.1 vs. uniprot
Match: A0A6H5KP70_9PHAE (Uncharacterized protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP70_9PHAE) HSP 1 Score: 111 bits (278), Expect = 4.680e-27 Identity = 55/137 (40.15%), Postives = 88/137 (64.23%), Query Frame = 1
Query: 1 LSAWTDADYDTCPDTRRSVSEGVVMMACGAISWFLRVQKVTAAASSESEYVALAEMVNELRFLRQVKAFMTPTIDVT-IKIHEDNEGAIKMAKNRLSSRRTGHVDIKHHIVRDAIDEGVVHIEYVRSGEQHADILMK 408
+ + DADY + RRSVS G+VM G ++WF R QK +++E+EYVA+A+++ E+ FLRQV FM P + I + EDN+GAI++A N +++ + H+D++HH +R+ ++ + I V + QHAD L K
Sbjct: 167 MQVFVDADYASKATDRRSVSGGLVMCGGGCVTWFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITNVPTPFQHADFLTK 303
BLAST of mRNA_H-elongata_contig52866.12607.1 vs. uniprot
Match: A0A6H5KCG6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCG6_9PHAE) HSP 1 Score: 110 bits (274), Expect = 5.320e-27 Identity = 56/134 (41.79%), Postives = 87/134 (64.93%), Query Frame = 1
Query: 10 WTDADYDTCPDTRRSVSEGVVMMACGAISWFLRVQKVTAAASSESEYVALAEMVNELRFLRQVKAFMTPTIDVT-IKIHEDNEGAIKMAKNRLSSRRTGHVDIKHHIVRDAIDEGVVHIEYVRSGEQHADILMK 408
+ DAD+ + RRSVS +V +A + W R QK + ++SE+EY+A+ + V E F+ + F+ P++ I + EDNEGAI +A+N LSS R+ H+D++HH +R+ +EGV+ + +V S EQHADIL K
Sbjct: 106 YVDADFASKATDRRSVSGAMVFVAAMLVVWISRTQKCVSQSTSEAEYLAMGDGVKEALFVNGMLQFLRPSVKPRKIDVLEDNEGAIALAENPLSSSRSKHIDVRHHFLRNLTEEGVIEVTHVPSKEQHADILTK 239 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig52866.12607.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig52866.12607.1 >prot_H-elongata_contig52866.12607.1 ID=prot_H-elongata_contig52866.12607.1|Name=mRNA_H-elongata_contig52866.12607.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=136bp LSAWTDADYDTCPDTRRSVSEGVVMMACGAISWFLRVQKVTAAASSESEYback to top mRNA from alignment at H-elongata_contig52866:1469..1876+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig52866.12607.1 ID=mRNA_H-elongata_contig52866.12607.1|Name=mRNA_H-elongata_contig52866.12607.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=408bp|location=Sequence derived from alignment at H-elongata_contig52866:1469..1876+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig52866:1469..1876+ >mRNA_H-elongata_contig52866.12607.1 ID=mRNA_H-elongata_contig52866.12607.1|Name=mRNA_H-elongata_contig52866.12607.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=816bp|location=Sequence derived from alignment at H-elongata_contig52866:1469..1876+ (Himanthalia elongata Himel1 dioecious)back to top |