mRNA_H-elongata_contig52866.12607.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig52866.12607.1
Unique NamemRNA_H-elongata_contig52866.12607.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig52866.12607.1 vs. uniprot
Match: A0A6H5JWK8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWK8_9PHAE)

HSP 1 Score: 121 bits (303), Expect = 2.920e-30
Identity = 64/137 (46.72%), Postives = 92/137 (67.15%), Query Frame = 1
Query:    1 LSAWTDADYDTCPDTRRSVSEGVVMMACGAISWFLRVQKVTAAASSESEYVALAEMVNELRFLRQVKAFMTPT-IDVTIKIHEDNEGAIKMAKNRLSSRRTGHVDIKHHIVRDAIDEGVVHIEYVRSGEQHADILMK 408
            L  + DADY +    RRSVS GVVM A GAI+WF + QK    +++++EYVA+A+M  E+ FLR+V  FM P  +   I ++EDNEGAI++AK+ +S+  + H+D++HH +R  +DE  V I +V S  QHAD L K
Sbjct:  230 LITFADADYASRAADRRSVSGGVVMCAGGAIAWFSKTQKCVTLSTTQAEYVAMADMGKEILFLREVWRFMLPKELRPCIPLYEDNEGAIQIAKHPISNSNSKHIDVRHHFLRQLVDEKEVEIIHVASQYQHADFLTK 366          
BLAST of mRNA_H-elongata_contig52866.12607.1 vs. uniprot
Match: A0A6H5KIL0_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIL0_9PHAE)

HSP 1 Score: 122 bits (307), Expect = 8.770e-30
Identity = 65/137 (47.45%), Postives = 92/137 (67.15%), Query Frame = 1
Query:    1 LSAWTDADYDTCPDTRRSVSEGVVMMACGAISWFLRVQKVTAAASSESEYVALAEMVNELRFLRQVKAFMTPT-IDVTIKIHEDNEGAIKMAKNRLSSRRTGHVDIKHHIVRDAIDEGVVHIEYVRSGEQHADILMK 408
            L  + DADY +    RRSVS GVVM A GAI+WF + QK    +++++EYVA+A+M  E+ FLRQV  FM P  +   I ++EDNEGAI++AK+ +S+  + H+D++HH +R  +DE  V I +V S  QHAD L K
Sbjct:  911 LITFVDADYASVAADRRSVSGGVVMCAGGAIAWFSKTQKCVTLSTTQAEYVAMADMGKEILFLRQVWRFMLPKELRPCIPLYEDNEGAIQIAKHPVSNSNSKHIDVRHHFLRQLVDEKEVEIIHVASQYQHADFLTK 1047          
BLAST of mRNA_H-elongata_contig52866.12607.1 vs. uniprot
Match: A0A6H5JR13_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR13_9PHAE)

HSP 1 Score: 122 bits (306), Expect = 1.150e-29
Identity = 65/137 (47.45%), Postives = 92/137 (67.15%), Query Frame = 1
Query:    1 LSAWTDADYDTCPDTRRSVSEGVVMMACGAISWFLRVQKVTAAASSESEYVALAEMVNELRFLRQVKAFMTPT-IDVTIKIHEDNEGAIKMAKNRLSSRRTGHVDIKHHIVRDAIDEGVVHIEYVRSGEQHADILMK 408
            L  + DADY +    RRSVS GVVM A GAI+WF + QK    +++++EYVA+A+M  E+ FLRQV  FM P  +   I ++EDNEGAI++AK+ +S+  + H+D++HH +R  +DE  V I +V S  QHAD L K
Sbjct:  534 LITFADADYASRAADRRSVSGGVVMCAGGAIAWFSKTQKCVTLSTTQAEYVAMADMGKEILFLRQVWRFMLPKELRPCIPLYEDNEGAIQIAKHPISNSNSKHIDVRHHFLRQLVDEKEVEIIHVASQYQHADFLTK 670          
BLAST of mRNA_H-elongata_contig52866.12607.1 vs. uniprot
Match: A0A6H5JRZ9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRZ9_9PHAE)

HSP 1 Score: 120 bits (301), Expect = 1.160e-29
Identity = 64/137 (46.72%), Postives = 92/137 (67.15%), Query Frame = 1
Query:    1 LSAWTDADYDTCPDTRRSVSEGVVMMACGAISWFLRVQKVTAAASSESEYVALAEMVNELRFLRQVKAFMTPT-IDVTIKIHEDNEGAIKMAKNRLSSRRTGHVDIKHHIVRDAIDEGVVHIEYVRSGEQHADILMK 408
            L  + +ADY +    RRSVS GVVM A GAI+WF + QK    +++++EYVA+A+M  E+ FLRQV  FM P  +   I ++EDNEGAI++AK+ +S+  + H+D++HH +R  +DE  V I +V S  QHAD L K
Sbjct:  282 LITFVNADYASRAADRRSVSGGVVMCAGGAIAWFSKTQKCVTLSTTQAEYVAMADMGKEILFLRQVWRFMLPKELRPCIPLYEDNEGAIQIAKHPISNSNSKHIDVRHHFLRQLVDEKEVEIIHVASQYQHADFLTK 418          
BLAST of mRNA_H-elongata_contig52866.12607.1 vs. uniprot
Match: A0A6H5JWA6_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWA6_9PHAE)

HSP 1 Score: 121 bits (304), Expect = 2.290e-29
Identity = 65/137 (47.45%), Postives = 91/137 (66.42%), Query Frame = 1
Query:    1 LSAWTDADYDTCPDTRRSVSEGVVMMACGAISWFLRVQKVTAAASSESEYVALAEMVNELRFLRQVKAFMTPT-IDVTIKIHEDNEGAIKMAKNRLSSRRTGHVDIKHHIVRDAIDEGVVHIEYVRSGEQHADILMK 408
            L A+ DADY +    RRSVS GVVM A GAI+WF + Q     ++++SEYVA+A+M  E+ FLRQV  FM P  +   I ++EDNEGAI++AK+ +S   + H+D++HH +R  +DE  V + +V S  QHAD L K
Sbjct:  601 LIAFVDADYASRAADRRSVSGGVVMCAGGAIAWFSKTQTCVTLSTTQSEYVAMADMGKEILFLRQVWRFMLPKELRPCIPLYEDNEGAIQIAKHPISKSNSKHIDVRHHFLRQLVDEKEVELIHVASKYQHADFLTK 737          
BLAST of mRNA_H-elongata_contig52866.12607.1 vs. uniprot
Match: A0A6H5L5J6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5J6_9PHAE)

HSP 1 Score: 116 bits (291), Expect = 8.410e-28
Identity = 63/137 (45.99%), Postives = 90/137 (65.69%), Query Frame = 1
Query:    1 LSAWTDADYDTCPDTRRSVSEGVVMMACGAISWFLRVQKVTAAASSESEYVALAEMVNELRFLRQVKAFMTPT-IDVTIKIHEDNEGAIKMAKNRLSSRRTGHVDIKHHIVRDAIDEGVVHIEYVRSGEQHADILMK 408
            L A+ DADY +    RRSVS GVVM A GAI+WF + Q+    +++++EYVA+A+M   + FLRQV  FM P  +     +HEDNEGAI++AK+ +S+  + H+D++HH +R  +DE  V I +  S  QHAD L K
Sbjct:  415 LIAFVDADYASRAADRRSVSGGVVMCAGGAIAWFSKTQECVTLSTTQAEYVAMADMGKVILFLRQVWRFMLPKELRPCSPLHEDNEGAIQIAKHPISNSNSKHIDVRHHFLRQLVDEKEVDIIHGASKYQHADFLTK 551          
BLAST of mRNA_H-elongata_contig52866.12607.1 vs. uniprot
Match: A0A6H5KKT4_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKT4_9PHAE)

HSP 1 Score: 116 bits (291), Expect = 1.240e-27
Identity = 65/138 (47.10%), Postives = 92/138 (66.67%), Query Frame = 1
Query:    1 LSAWTDADYDTCPDTRRSVSEGVVMMACGAISWFLRVQKVTAAASSESEYVALAEMVNEL-RFLRQVKAFMTPT-IDVTIKIHEDNEGAIKMAKNRLSSRRTGHVDIKHHIVRDAIDEGVVHIEYVRSGEQHADILMK 408
            L A+ DADY +    RRSVS GVVM A GAI+WF + QK    +++++EYVA+A+M  E+  FLRQV  FM P  +   I ++EDNEG IK+AK+ +S+  + H++++HH +R  +DE  V I +V S  QHAD L K
Sbjct:  752 LIAFVDADYASRAAHRRSVSGGVVMYAGGAIAWFSKTQKCVTLSTTQAEYVAMADMGMEMILFLRQVWRFMLPKELRPCIPLYEDNEGTIKIAKHPISNSNSKHIEVRHHFLRQLVDEKEVEIIHVASKYQHADFLTK 889          
BLAST of mRNA_H-elongata_contig52866.12607.1 vs. uniprot
Match: A0A6H5K307_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K307_9PHAE)

HSP 1 Score: 115 bits (289), Expect = 1.910e-27
Identity = 63/137 (45.99%), Postives = 90/137 (65.69%), Query Frame = 1
Query:    1 LSAWTDADYDTCPDTRRSVSEGVVMMACGAISWFLRVQKVTAAASSESEYVALAEMVNELRFLRQVKAFMTPT-IDVTIKIHEDNEGAIKMAKNRLSSRRTGHVDIKHHIVRDAIDEGVVHIEYVRSGEQHADILMK 408
            L  +  ADY +    RRS S GVVM A GAI+WF + QK    +++++EYVA+A+M  E+ FLRQV  FM P  +   I ++EDNEGAI++AK+ +S+  + H+D++HH +R  +DE  V I +V S  QHAD L K
Sbjct:  463 LITFVYADYASRAADRRSESGGVVMCAGGAIAWFSKTQKCVTLSTTQAEYVAMADMGKEILFLRQVWRFMLPKELRPCIPLYEDNEGAIQIAKHPISNSNSKHIDVRHHFLRQLVDEKEVEIIHVASQYQHADSLTK 599          
BLAST of mRNA_H-elongata_contig52866.12607.1 vs. uniprot
Match: A0A6H5KP70_9PHAE (Uncharacterized protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP70_9PHAE)

HSP 1 Score: 111 bits (278), Expect = 4.680e-27
Identity = 55/137 (40.15%), Postives = 88/137 (64.23%), Query Frame = 1
Query:    1 LSAWTDADYDTCPDTRRSVSEGVVMMACGAISWFLRVQKVTAAASSESEYVALAEMVNELRFLRQVKAFMTPTIDVT-IKIHEDNEGAIKMAKNRLSSRRTGHVDIKHHIVRDAIDEGVVHIEYVRSGEQHADILMK 408
            +  + DADY +    RRSVS G+VM   G ++WF R QK    +++E+EYVA+A+++ E+ FLRQV  FM P   +  I + EDN+GAI++A N +++  + H+D++HH +R+ ++   + I  V +  QHAD L K
Sbjct:  167 MQVFVDADYASKATDRRSVSGGLVMCGGGCVTWFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITNVPTPFQHADFLTK 303          
BLAST of mRNA_H-elongata_contig52866.12607.1 vs. uniprot
Match: A0A6H5KCG6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCG6_9PHAE)

HSP 1 Score: 110 bits (274), Expect = 5.320e-27
Identity = 56/134 (41.79%), Postives = 87/134 (64.93%), Query Frame = 1
Query:   10 WTDADYDTCPDTRRSVSEGVVMMACGAISWFLRVQKVTAAASSESEYVALAEMVNELRFLRQVKAFMTPTIDVT-IKIHEDNEGAIKMAKNRLSSRRTGHVDIKHHIVRDAIDEGVVHIEYVRSGEQHADILMK 408
            + DAD+ +    RRSVS  +V +A   + W  R QK  + ++SE+EY+A+ + V E  F+  +  F+ P++    I + EDNEGAI +A+N LSS R+ H+D++HH +R+  +EGV+ + +V S EQHADIL K
Sbjct:  106 YVDADFASKATDRRSVSGAMVFVAAMLVVWISRTQKCVSQSTSEAEYLAMGDGVKEALFVNGMLQFLRPSVKPRKIDVLEDNEGAIALAENPLSSSRSKHIDVRHHFLRNLTEEGVIEVTHVPSKEQHADILTK 239          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig52866.12607.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JWK8_9PHAE2.920e-3046.72Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KIL0_9PHAE8.770e-3047.45Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JR13_9PHAE1.150e-2947.45Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JRZ9_9PHAE1.160e-2946.72Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JWA6_9PHAE2.290e-2947.45Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5L5J6_9PHAE8.410e-2845.99Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KKT4_9PHAE1.240e-2747.10Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5K307_9PHAE1.910e-2745.99Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KP70_9PHAE4.680e-2740.15Uncharacterized protein n=4 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KCG6_9PHAE5.320e-2741.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig52866contigH-elongata_contig52866:1469..1876 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score105.9
Seed ortholog evalue1.5e-20
Seed eggNOG ortholog67593.Physo133508
EggNOG free text desc.gag-polypeptide of LTR copia-type
EggNOG OGs3QHHC@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size408
Cds size408
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930863.436071-CDS-H-elongata_contig52866:1468..18761622930863.436071-CDS-H-elongata_contig52866:1468..1876Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52866 1469..1876 +
1691679602.6263654-CDS-H-elongata_contig52866:1468..18761691679602.6263654-CDS-H-elongata_contig52866:1468..1876Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52866 1469..1876 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig52866.12607.1prot_H-elongata_contig52866.12607.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig52866 1469..1876 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig52866.12607.1

>prot_H-elongata_contig52866.12607.1 ID=prot_H-elongata_contig52866.12607.1|Name=mRNA_H-elongata_contig52866.12607.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=136bp
LSAWTDADYDTCPDTRRSVSEGVVMMACGAISWFLRVQKVTAAASSESEY
VALAEMVNELRFLRQVKAFMTPTIDVTIKIHEDNEGAIKMAKNRLSSRRT
GHVDIKHHIVRDAIDEGVVHIEYVRSGEQHADILMK
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mRNA from alignment at H-elongata_contig52866:1469..1876+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig52866.12607.1 ID=mRNA_H-elongata_contig52866.12607.1|Name=mRNA_H-elongata_contig52866.12607.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=408bp|location=Sequence derived from alignment at H-elongata_contig52866:1469..1876+ (Himanthalia elongata Himel1 dioecious)
TTATCAGCATGGACCGACGCAGACTACGACACCTGCCCAGACACGCGTCG CTCAGTGTCGGAAGGGGTGGTGATGATGGCTTGCGGGGCCATTAGTTGGT TCTTACGAGTGCAAAAGGTAACGGCGGCGGCGTCTTCCGAATCGGAATAC GTCGCGCTGGCTGAGATGGTAAACGAGTTGCGTTTCCTACGACAGGTCAA GGCGTTCATGACCCCTACAATCGACGTCACCATCAAGATACACGAGGACA ACGAAGGCGCGATCAAGATGGCAAAAAACCGCCTCAGCAGCCGACGAACG GGGCACGTGGACATCAAGCATCACATTGTCCGCGACGCGATCGATGAGGG AGTGGTTCACATAGAATACGTTCGGTCCGGGGAACAGCACGCCGACATCC TCATGAAG
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Coding sequence (CDS) from alignment at H-elongata_contig52866:1469..1876+

>mRNA_H-elongata_contig52866.12607.1 ID=mRNA_H-elongata_contig52866.12607.1|Name=mRNA_H-elongata_contig52866.12607.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=816bp|location=Sequence derived from alignment at H-elongata_contig52866:1469..1876+ (Himanthalia elongata Himel1 dioecious)
TTATCAGCATGGACCGACGCAGACTACGACACCTGCCCAGACACGCGTCG
CTCAGTGTCGGAAGGGGTGGTGATGATGGCTTGCGGGGCCATTAGTTGGT
TCTTACGAGTGCAAAAGGTAACGGCGGCGGCGTCTTCCGAATCGGAATAC
GTCGCGCTGGCTGAGATGGTAAACGAGTTGCGTTTCCTACGACAGGTCAA
GGCGTTCATGACCCCTACAATCGACGTCACCATCAAGATACACGAGGACA
ACGAAGGCGCGATCAAGATGGCAAAAAACCGCCTCAGCAGCCGACGAACG
GGGCACGTGGACATCAAGCATCACATTGTCCGCGACGCGATCGATGAGGG
AGTGGTTCACATAGAATACGTTCGGTCCGGGGAACAGCACGCCGACATCC
TCATGAAGTTATCAGCATGGACCGACGCAGACTACGACACCTGCCCAGAC
ACGCGTCGCTCAGTGTCGGAAGGGGTGGTGATGATGGCTTGCGGGGCCAT
TAGTTGGTTCTTACGAGTGCAAAAGGTAACGGCGGCGGCGTCTTCCGAAT
CGGAATACGTCGCGCTGGCTGAGATGGTAAACGAGTTGCGTTTCCTACGA
CAGGTCAAGGCGTTCATGACCCCTACAATCGACGTCACCATCAAGATACA
CGAGGACAACGAAGGCGCGATCAAGATGGCAAAAAACCGCCTCAGCAGCC
GACGAACGGGGCACGTGGACATCAAGCATCACATTGTCCGCGACGCGATC
GATGAGGGAGTGGTTCACATAGAATACGTTCGGTCCGGGGAACAGCACGC
CGACATCCTCATGAAG
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