mRNA_H-elongata_contig52838.12604.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig52838.12604.1
Unique NamemRNA_H-elongata_contig52838.12604.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig52838.12604.1 vs. uniprot
Match: D8LJB4_ECTSI (Rab-GAP TBC domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJB4_ECTSI)

HSP 1 Score: 214 bits (545), Expect = 1.020e-63
Identity = 101/117 (86.32%), Postives = 108/117 (92.31%), Query Frame = 1
Query:    1 VQRVPGLYAALLNSADAMDANDITGVRGPKQSCFVDIEKDLKRTLGMKDVLPLKNVLRCMSTFVPDVGYVQGMNFVCRSLLQVFDDEEEVFWVFVGMLQRFGLRRLYSPGMPLLRLR 351
            ++RVPGLY+ALL SADAMDAND+TGVRGPKQSCFVDIEKDL+RTLGM DV PL+NVLRC STFVPDVGYVQGMNFVCRS+LQVF DEEE FWVFVGMLQRF LR LY PGMPLLRLR
Sbjct:  418 IERVPGLYSALLMSADAMDANDMTGVRGPKQSCFVDIEKDLQRTLGMTDVSPLRNVLRCTSTFVPDVGYVQGMNFVCRSVLQVFQDEEEAFWVFVGMLQRFRLRELYCPGMPLLRLR 534          
BLAST of mRNA_H-elongata_contig52838.12604.1 vs. uniprot
Match: A0A6H5JIN0_9PHAE (Rab-GAP TBC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIN0_9PHAE)

HSP 1 Score: 215 bits (548), Expect = 4.870e-63
Identity = 102/117 (87.18%), Postives = 108/117 (92.31%), Query Frame = 1
Query:    1 VQRVPGLYAALLNSADAMDANDITGVRGPKQSCFVDIEKDLKRTLGMKDVLPLKNVLRCMSTFVPDVGYVQGMNFVCRSLLQVFDDEEEVFWVFVGMLQRFGLRRLYSPGMPLLRLR 351
            ++RVPGLY+ALL SADAMDANDITGVRGPKQSCFVDIEKDL+RTLGM DV PL+NVLRC STFVPDVGYVQGMNFVCRS+LQVF DEEE FWVFVGMLQRF LR LY PGMPLLRLR
Sbjct:  648 IERVPGLYSALLMSADAMDANDITGVRGPKQSCFVDIEKDLQRTLGMTDVSPLRNVLRCTSTFVPDVGYVQGMNFVCRSVLQVFQDEEEAFWVFVGMLQRFRLRELYCPGMPLLRLR 764          
BLAST of mRNA_H-elongata_contig52838.12604.1 vs. uniprot
Match: A0A078A7X3_STYLE (Tbc domain-containing protein n=1 Tax=Stylonychia lemnae TaxID=5949 RepID=A0A078A7X3_STYLE)

HSP 1 Score: 81.6 bits (200), Expect = 1.220e-15
Identity = 38/89 (42.70%), Postives = 59/89 (66.29%), Query Frame = 1
Query:  106 DIEKDLKRTL--------GMKDVLPLKNVLRCMSTFVPDVGYVQGMNFVCRSLLQVFDDEEEVFWVFVGMLQRFGLRRLYSPGMPLLRL 348
            +IEKD++RT         G ++   +  VLR ++  +P VGYVQG NF+  SL+++  +EE+VFW+F+ +L   GL +LY+ GMPLL+L
Sbjct:  852 EIEKDIERTFPNEKYFYKGSQNYYKMLRVLRAVAYHMPQVGYVQGFNFIAGSLMKLLKNEEQVFWMFINILTWRGLYQLYTDGMPLLKL 940          
BLAST of mRNA_H-elongata_contig52838.12604.1 vs. uniprot
Match: A0A7S2PZU8_9DINO (Hypothetical protein n=1 Tax=Brandtodinium nutricula TaxID=1333877 RepID=A0A7S2PZU8_9DINO)

HSP 1 Score: 67.8 bits (164), Expect = 2.940e-11
Identity = 37/100 (37.00%), Postives = 55/100 (55.00%), Query Frame = 1
Query:   79 RGPKQSCFVDIEKDLKRT------------LGMKDVLPLKNVLRCMSTFVPDVGYVQGMNFVCRSLLQVFDDEEEVFWVFVGMLQRFGLRRLYSPGMPLL 342
            R  +  C  +I KD+ RT            LG + +L   NVLR  S F P+VGY QGM F+C  LL ++  EE+ F + + +L  + + +L+ PG+PLL
Sbjct:   13 RTEEAPCEAEIVKDINRTFPKHVLYRDKTGLGQQQLL---NVLRAYSVFNPEVGYCQGMGFICGVLL-MYMCEEDAFLMLISLLDNYRMSKLFMPGLPLL 108          
BLAST of mRNA_H-elongata_contig52838.12604.1 vs. uniprot
Match: M5GG67_DACPD (TBC-domain-containing protein n=1 Tax=Dacryopinax primogenitus (strain DJM 731) TaxID=1858805 RepID=M5GG67_DACPD)

HSP 1 Score: 68.6 bits (166), Expect = 4.650e-11
Identity = 42/119 (35.29%), Postives = 60/119 (50.42%), Query Frame = 1
Query:   13 PGLYAALLNSADAMDANDITGVRGPKQSCFVDIEKDLKRTLGMK--------DVLPLKNVLRCMSTFVPDVGYVQGMNFVCRSLLQVFDDEEEVFWVFVGMLQRFGLRRLYSPGMPLLR 345
            PGL+  LL+S DA     +            +IEKD++RT+ +          V  L+ VL+  S   P VGY QGMN +  SLL V+ DEEE FWV   +++R      +SP + + R
Sbjct: 1009 PGLFHELLSSHDAQTNISLE-----------EIEKDVRRTMPLNVFFGGDGVGVGKLRRVLQAYSWRNPAVGYCQGMNLITSSLLLVYADEEEAFWVLASIIERLLPADFFSPSLLVSR 1116          
BLAST of mRNA_H-elongata_contig52838.12604.1 vs. uniprot
Match: UPI0004407424 (TBC-domain-containing protein n=1 Tax=Fomitiporia mediterranea (strain MF3/22) TaxID=694068 RepID=UPI0004407424)

HSP 1 Score: 67.4 bits (163), Expect = 1.180e-10
Identity = 40/119 (33.61%), Postives = 60/119 (50.42%), Query Frame = 1
Query:   13 PGLYAALLNSADAMDANDITGVRGPKQSCFVDIEKDLKRTLGMK--------DVLPLKNVLRCMSTFVPDVGYVQGMNFVCRSLLQVFDDEEEVFWVFVGMLQRFGLRRLYSPGMPLLR 345
            PGL+  LL+S ++ D+ D             +IEKD+ RT+ +          +  L+ VL   S   P VGY QGMN +  +LL VF +EEE FWV   +++R      +SP + + R
Sbjct:  966 PGLFRDLLHSRESTDSVD------------AEIEKDVGRTMPLNIFFGGDGPGIDKLRRVLLAYSRRNPSVGYCQGMNLITSTLLLVFGNEEEAFWVLSAIIERLLPNDFFSPSLLVSR 1072          
BLAST of mRNA_H-elongata_contig52838.12604.1 vs. uniprot
Match: A0A165DPS2_9BASI (TBC-domain-containing protein n=1 Tax=Calocera cornea HHB12733 TaxID=1353952 RepID=A0A165DPS2_9BASI)

HSP 1 Score: 67.0 bits (162), Expect = 1.610e-10
Identity = 41/119 (34.45%), Postives = 59/119 (49.58%), Query Frame = 1
Query:   13 PGLYAALLNSADAMDANDITGVRGPKQSCFVDIEKDLKRTLGMK--------DVLPLKNVLRCMSTFVPDVGYVQGMNFVCRSLLQVFDDEEEVFWVFVGMLQRFGLRRLYSPGMPLLR 345
            PGL+  LL+S +           G       +IEKD++RT+ +          V  L+ VL+  S   P VGY QGMN +  SLL V+ DEEE FWV   +++R      +SP + + R
Sbjct: 1055 PGLFHELLSSHE-----------GEVNISLEEIEKDVRRTMPLNVFFGGDGVGVGKLRRVLQAYSWRNPAVGYCQGMNLITSSLLLVYADEEEAFWVLTSIIERLLPADFFSPSLLVSR 1162          
BLAST of mRNA_H-elongata_contig52838.12604.1 vs. uniprot
Match: A0A167R413_CALVF (TBC-domain-containing protein n=1 Tax=Calocera viscosa (strain TUFC12733) TaxID=1330018 RepID=A0A167R413_CALVF)

HSP 1 Score: 67.0 bits (162), Expect = 1.610e-10
Identity = 41/119 (34.45%), Postives = 59/119 (49.58%), Query Frame = 1
Query:   13 PGLYAALLNSADAMDANDITGVRGPKQSCFVDIEKDLKRTLGMK--------DVLPLKNVLRCMSTFVPDVGYVQGMNFVCRSLLQVFDDEEEVFWVFVGMLQRFGLRRLYSPGMPLLR 345
            PGL+  LL+S +           G       +IEKD++RT+ +          V  L+ VL+  S   P VGY QGMN +  SLL V+ DEEE FW+   +L+R      +SP + + R
Sbjct: 1007 PGLFHELLSSHE-----------GEINVSLEEIEKDVRRTMPLNVFFGGDGVGVGKLRRVLQAYSWRNPSVGYCQGMNLITSSLLLVYADEEEAFWMLTSILERLLPADFFSPSLLVSR 1114          
BLAST of mRNA_H-elongata_contig52838.12604.1 vs. uniprot
Match: K3WGG4_GLOUD (Rab-GAP TBC domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WGG4_GLOUD)

HSP 1 Score: 66.6 bits (161), Expect = 1.830e-10
Identity = 28/63 (44.44%), Postives = 44/63 (69.84%), Query Frame = 1
Query:  157 LKNVLRCMSTFVPDVGYVQGMNFVCRSLLQVFDDEEEVFWVFVGMLQRFGLRRLYSPGMPLLR 345
            ++ +LR   T+ P VGY QGMNF+ R L++V ++E +VFW+FVG+ +    R LY PG+ +L+
Sbjct:  191 IRRILRAYVTYNPRVGYCQGMNFLVRVLIEVTENEADVFWLFVGLSEPEINRNLYEPGLVVLQ 253          
BLAST of mRNA_H-elongata_contig52838.12604.1 vs. uniprot
Match: A0A4Y9Z4U0_9AGAM (Rab-GAP TBC domain-containing protein n=1 Tax=Dentipellis fragilis TaxID=205917 RepID=A0A4Y9Z4U0_9AGAM)

HSP 1 Score: 66.2 bits (160), Expect = 3.030e-10
Identity = 42/117 (35.90%), Postives = 57/117 (48.72%), Query Frame = 1
Query:    7 RVPGLYAALLNSADAMDANDITGVRGPKQSCFVDIEKDLKRTLGMK--------DVLPLKNVLRCMSTFVPDVGYVQGMNFVCRSLLQVFDDEEEVFWVFVGMLQRFGLRRLYSPGM 333
            R PGL+  LL  A+A       G  G       +IEKD+ RT+ +          V  L+ VL   S   P VGY QGMN V  +LL V+ DEE+ FWV   +++R      +SP +
Sbjct: 1291 REPGLFTDLLAEAEAEAKAHREG--GGDGGVVREIEKDVGRTMPLNVFFGGDGAGVEKLRRVLVAYSRRNPAVGYCQGMNLVASTLLLVYADEEDAFWVLAAIIERILPEDFFSPSL 1405          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig52838.12604.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LJB4_ECTSI1.020e-6386.32Rab-GAP TBC domain-containing protein n=1 Tax=Ecto... [more]
A0A6H5JIN0_9PHAE4.870e-6387.18Rab-GAP TBC domain-containing protein n=1 Tax=Ecto... [more]
A0A078A7X3_STYLE1.220e-1542.70Tbc domain-containing protein n=1 Tax=Stylonychia ... [more]
A0A7S2PZU8_9DINO2.940e-1137.00Hypothetical protein n=1 Tax=Brandtodinium nutricu... [more]
M5GG67_DACPD4.650e-1135.29TBC-domain-containing protein n=1 Tax=Dacryopinax ... [more]
UPI00044074241.180e-1033.61TBC-domain-containing protein n=1 Tax=Fomitiporia ... [more]
A0A165DPS2_9BASI1.610e-1034.45TBC-domain-containing protein n=1 Tax=Calocera cor... [more]
A0A167R413_CALVF1.610e-1034.45TBC-domain-containing protein n=1 Tax=Calocera vis... [more]
K3WGG4_GLOUD1.830e-1044.44Rab-GAP TBC domain-containing protein n=1 Tax=Glob... [more]
A0A4Y9Z4U0_9AGAM3.030e-1035.90Rab-GAP TBC domain-containing protein n=1 Tax=Dent... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig52838contigH-elongata_contig52838:273..1651 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score214.5
Seed ortholog evalue2.6e-53
Seed eggNOG ortholog2880.D8LJB4
Preferred nameFASTKD3
KEGG koko:K19944
EggNOG free text desc.regulation of vesicle fusion
EggNOG OGsCOG5210@1,KOG1102@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionRab-GTPase-TBC domain
Ec32 orthologEc-02_005450.1
Exons3
Model size354
Cds size354
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig52838.12604.1prot_H-elongata_contig52838.12604.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig52838 273..1651 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930863.125751-CDS-H-elongata_contig52838:272..4131622930863.125751-CDS-H-elongata_contig52838:272..413Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52838 273..413 -
1691679602.4916618-CDS-H-elongata_contig52838:272..4131691679602.4916618-CDS-H-elongata_contig52838:272..413Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52838 273..413 -
1622930863.1466615-CDS-H-elongata_contig52838:823..9191622930863.1466615-CDS-H-elongata_contig52838:823..919Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52838 824..919 -
1691679602.51064-CDS-H-elongata_contig52838:823..9191691679602.51064-CDS-H-elongata_contig52838:823..919Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52838 824..919 -
1622930863.1634555-CDS-H-elongata_contig52838:1534..16511622930863.1634555-CDS-H-elongata_contig52838:1534..1651Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52838 1535..1651 -
1691679602.5221193-CDS-H-elongata_contig52838:1534..16511691679602.5221193-CDS-H-elongata_contig52838:1534..1651Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52838 1535..1651 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig52838.12604.1

>prot_H-elongata_contig52838.12604.1 ID=prot_H-elongata_contig52838.12604.1|Name=mRNA_H-elongata_contig52838.12604.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=118bp
VQRVPGLYAALLNSADAMDANDITGVRGPKQSCFVDIEKDLKRTLGMKDV
LPLKNVLRCMSTFVPDVGYVQGMNFVCRSLLQVFDDEEEVFWVFVGMLQR
FGLRRLYSPGMPLLRLR*
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mRNA from alignment at H-elongata_contig52838:273..1651-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig52838.12604.1 ID=mRNA_H-elongata_contig52838.12604.1|Name=mRNA_H-elongata_contig52838.12604.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1379bp|location=Sequence derived from alignment at H-elongata_contig52838:273..1651- (Himanthalia elongata Himel1 dioecious)
GTCCAGCGCGTTCCGGGTCTGTACGCGGCACTCCTCAACAGCGCGGACGC CATGGACGCAAACGACATCACAGGAGTGCGAGGGCCCAAGCAGAGCTGCT TCGTCGACATCGAAAAGGTATATTGTACCCTTGTATGGTATCATATACAA ACACGCTTACTATGTTATACCTGTTATGTTATGACCACACACATCGGGAA CCACAAACATACACAAACCTTGATTTAAATTACTTCTCTACTAATTGCGG TACATTCGGCGCGCGTTTTCCGCGAGTTAGTGCCGCGTTTTTTTGTTTTT TTGTTTTTTTACGTTTGGATGTCTTGTCAACAGTGACGGGGTCATAGTCG TACTGTAGTATATAATTAGTACTTCGACTGTTTCGTACGGTGACTTGAGT CAGGTTACGATCAGGGGAAATAATTCGTGGTTGTCATTCCACTGGCGGCG TTTTTTTTTCCTCAGTCAGTTTTTTTCATTTTCATTCTTGTTTGCCTCTT TCCGCGTTTATCTGTTTCTGTAGTATGCATATCTATCTATCTTTGTGTGT ATTCGTGGTGACATTCGCTCTAGGGATAATAGTCTATATACTTAATGGTA TTTTCCCAGTACAGTATTATTATCATTATTTTTTTGTGGTTGTTCTTATC GAGGCTAAATGCTTTTATAAATAAGTGGTTTCGTGAGACAAGGCTCTCGG TTCGATGCTTTCTACCCCTTACTCACGGACAGGACCTCAAGAGGACGCTC GGTATGAAGGATGTCTTGCCCTTGAAGAACGTCCTGAGGTGTATGTCTAC CTTCGTGCCAGACGTGGGCTACGTTCAGGTGTGTGTATGTACATATTCAT GTGTAGAGCTGGGCAACCTCCGTTTTGCGTGGGGTTAATACGCATACTTT ACATATCTATATATCTATATATCTATATAATGTTTGCCCTTCTCCAAATA TATATATATATACATATACTTCGTATATAAATACACAATGTCCTTCTGCA AATGGAGGGCACATCATTATTCATGAACGCTATGATCGATGATCGATTTT ACCCCTCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC CCCCNNNNNNNNNNAAACAAACACCCTTTTCCACCTCCTAGCCCCCACCT TTTTCCCTGCACCCTTTTTCCCTCTTTCTTTTTTCCCCCCCCCCCCCCCC CCCCCCCCCTTCCCCTCCCCCTTCTCGATCGATCACAGGGCATGAACTTC GTGTGTCGGTCCCTGCTCCAGGTCTTCGATGACGAGGAAGAAGTTTTTTG GGTATTCGTTGGGATGCTGCAACGTTTCGGTCTGCGGAGGCTTTACAGCC CCGGCATGCCGTTGCTCCGCCTCAGGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig52838:273..1651-

>mRNA_H-elongata_contig52838.12604.1 ID=mRNA_H-elongata_contig52838.12604.1|Name=mRNA_H-elongata_contig52838.12604.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=708bp|location=Sequence derived from alignment at H-elongata_contig52838:273..1651- (Himanthalia elongata Himel1 dioecious)
GTCCAGCGCGTTCCGGGTCTGTACGCGGCACTCCTCAACAGCGCGGACGC
CATGGACGCAAACGACATCACAGGAGTGCGAGGGCCCAAGCAGAGCTGCT
TCGTCGACATCGAAAAGGTCCAGCGCGTTCCGGGTCTGTACGCGGCACTC
CTCAACAGCGCGGACGCCATGGACGCAAACGACATCACAGGAGTGCGAGG
GCCCAAGCAGAGCTGCTTCGTCGACATCGAAAAGGACCTCAAGAGGACGC
TCGGTATGAAGGATGTCTTGCCCTTGAAGAACGTCCTGAGGTGTATGTCT
ACCTTCGTGCCAGACGTGGGCTACGTTCAGGACCTCAAGAGGACGCTCGG
TATGAAGGATGTCTTGCCCTTGAAGAACGTCCTGAGGTGTATGTCTACCT
TCGTGCCAGACGTGGGCTACGTTCAGGGCATGAACTTCGTGTGTCGGTCC
CTGCTCCAGGTCTTCGATGACGAGGAAGAAGTTTTTTGGGTATTCGTTGG
GATGCTGCAACGTTTCGGTCTGCGGAGGCTTTACAGCCCCGGCATGCCGT
TGCTCCGCCTCAGGTGAGGCATGAACTTCGTGTGTCGGTCCCTGCTCCAG
GTCTTCGATGACGAGGAAGAAGTTTTTTGGGTATTCGTTGGGATGCTGCA
ACGTTTCGGTCTGCGGAGGCTTTACAGCCCCGGCATGCCGTTGCTCCGCC
TCAGGTGA
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