mRNA_H-elongata_contig52838.12604.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig52838.12604.1 vs. uniprot
Match: D8LJB4_ECTSI (Rab-GAP TBC domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJB4_ECTSI) HSP 1 Score: 214 bits (545), Expect = 1.020e-63 Identity = 101/117 (86.32%), Postives = 108/117 (92.31%), Query Frame = 1
Query: 1 VQRVPGLYAALLNSADAMDANDITGVRGPKQSCFVDIEKDLKRTLGMKDVLPLKNVLRCMSTFVPDVGYVQGMNFVCRSLLQVFDDEEEVFWVFVGMLQRFGLRRLYSPGMPLLRLR 351
++RVPGLY+ALL SADAMDAND+TGVRGPKQSCFVDIEKDL+RTLGM DV PL+NVLRC STFVPDVGYVQGMNFVCRS+LQVF DEEE FWVFVGMLQRF LR LY PGMPLLRLR
Sbjct: 418 IERVPGLYSALLMSADAMDANDMTGVRGPKQSCFVDIEKDLQRTLGMTDVSPLRNVLRCTSTFVPDVGYVQGMNFVCRSVLQVFQDEEEAFWVFVGMLQRFRLRELYCPGMPLLRLR 534
BLAST of mRNA_H-elongata_contig52838.12604.1 vs. uniprot
Match: A0A6H5JIN0_9PHAE (Rab-GAP TBC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIN0_9PHAE) HSP 1 Score: 215 bits (548), Expect = 4.870e-63 Identity = 102/117 (87.18%), Postives = 108/117 (92.31%), Query Frame = 1
Query: 1 VQRVPGLYAALLNSADAMDANDITGVRGPKQSCFVDIEKDLKRTLGMKDVLPLKNVLRCMSTFVPDVGYVQGMNFVCRSLLQVFDDEEEVFWVFVGMLQRFGLRRLYSPGMPLLRLR 351
++RVPGLY+ALL SADAMDANDITGVRGPKQSCFVDIEKDL+RTLGM DV PL+NVLRC STFVPDVGYVQGMNFVCRS+LQVF DEEE FWVFVGMLQRF LR LY PGMPLLRLR
Sbjct: 648 IERVPGLYSALLMSADAMDANDITGVRGPKQSCFVDIEKDLQRTLGMTDVSPLRNVLRCTSTFVPDVGYVQGMNFVCRSVLQVFQDEEEAFWVFVGMLQRFRLRELYCPGMPLLRLR 764
BLAST of mRNA_H-elongata_contig52838.12604.1 vs. uniprot
Match: A0A078A7X3_STYLE (Tbc domain-containing protein n=1 Tax=Stylonychia lemnae TaxID=5949 RepID=A0A078A7X3_STYLE) HSP 1 Score: 81.6 bits (200), Expect = 1.220e-15 Identity = 38/89 (42.70%), Postives = 59/89 (66.29%), Query Frame = 1
Query: 106 DIEKDLKRTL--------GMKDVLPLKNVLRCMSTFVPDVGYVQGMNFVCRSLLQVFDDEEEVFWVFVGMLQRFGLRRLYSPGMPLLRL 348
+IEKD++RT G ++ + VLR ++ +P VGYVQG NF+ SL+++ +EE+VFW+F+ +L GL +LY+ GMPLL+L
Sbjct: 852 EIEKDIERTFPNEKYFYKGSQNYYKMLRVLRAVAYHMPQVGYVQGFNFIAGSLMKLLKNEEQVFWMFINILTWRGLYQLYTDGMPLLKL 940
BLAST of mRNA_H-elongata_contig52838.12604.1 vs. uniprot
Match: A0A7S2PZU8_9DINO (Hypothetical protein n=1 Tax=Brandtodinium nutricula TaxID=1333877 RepID=A0A7S2PZU8_9DINO) HSP 1 Score: 67.8 bits (164), Expect = 2.940e-11 Identity = 37/100 (37.00%), Postives = 55/100 (55.00%), Query Frame = 1
Query: 79 RGPKQSCFVDIEKDLKRT------------LGMKDVLPLKNVLRCMSTFVPDVGYVQGMNFVCRSLLQVFDDEEEVFWVFVGMLQRFGLRRLYSPGMPLL 342
R + C +I KD+ RT LG + +L NVLR S F P+VGY QGM F+C LL ++ EE+ F + + +L + + +L+ PG+PLL
Sbjct: 13 RTEEAPCEAEIVKDINRTFPKHVLYRDKTGLGQQQLL---NVLRAYSVFNPEVGYCQGMGFICGVLL-MYMCEEDAFLMLISLLDNYRMSKLFMPGLPLL 108
BLAST of mRNA_H-elongata_contig52838.12604.1 vs. uniprot
Match: M5GG67_DACPD (TBC-domain-containing protein n=1 Tax=Dacryopinax primogenitus (strain DJM 731) TaxID=1858805 RepID=M5GG67_DACPD) HSP 1 Score: 68.6 bits (166), Expect = 4.650e-11 Identity = 42/119 (35.29%), Postives = 60/119 (50.42%), Query Frame = 1
Query: 13 PGLYAALLNSADAMDANDITGVRGPKQSCFVDIEKDLKRTLGMK--------DVLPLKNVLRCMSTFVPDVGYVQGMNFVCRSLLQVFDDEEEVFWVFVGMLQRFGLRRLYSPGMPLLR 345
PGL+ LL+S DA + +IEKD++RT+ + V L+ VL+ S P VGY QGMN + SLL V+ DEEE FWV +++R +SP + + R
Sbjct: 1009 PGLFHELLSSHDAQTNISLE-----------EIEKDVRRTMPLNVFFGGDGVGVGKLRRVLQAYSWRNPAVGYCQGMNLITSSLLLVYADEEEAFWVLASIIERLLPADFFSPSLLVSR 1116
BLAST of mRNA_H-elongata_contig52838.12604.1 vs. uniprot
Match: UPI0004407424 (TBC-domain-containing protein n=1 Tax=Fomitiporia mediterranea (strain MF3/22) TaxID=694068 RepID=UPI0004407424) HSP 1 Score: 67.4 bits (163), Expect = 1.180e-10 Identity = 40/119 (33.61%), Postives = 60/119 (50.42%), Query Frame = 1
Query: 13 PGLYAALLNSADAMDANDITGVRGPKQSCFVDIEKDLKRTLGMK--------DVLPLKNVLRCMSTFVPDVGYVQGMNFVCRSLLQVFDDEEEVFWVFVGMLQRFGLRRLYSPGMPLLR 345
PGL+ LL+S ++ D+ D +IEKD+ RT+ + + L+ VL S P VGY QGMN + +LL VF +EEE FWV +++R +SP + + R
Sbjct: 966 PGLFRDLLHSRESTDSVD------------AEIEKDVGRTMPLNIFFGGDGPGIDKLRRVLLAYSRRNPSVGYCQGMNLITSTLLLVFGNEEEAFWVLSAIIERLLPNDFFSPSLLVSR 1072
BLAST of mRNA_H-elongata_contig52838.12604.1 vs. uniprot
Match: A0A165DPS2_9BASI (TBC-domain-containing protein n=1 Tax=Calocera cornea HHB12733 TaxID=1353952 RepID=A0A165DPS2_9BASI) HSP 1 Score: 67.0 bits (162), Expect = 1.610e-10 Identity = 41/119 (34.45%), Postives = 59/119 (49.58%), Query Frame = 1
Query: 13 PGLYAALLNSADAMDANDITGVRGPKQSCFVDIEKDLKRTLGMK--------DVLPLKNVLRCMSTFVPDVGYVQGMNFVCRSLLQVFDDEEEVFWVFVGMLQRFGLRRLYSPGMPLLR 345
PGL+ LL+S + G +IEKD++RT+ + V L+ VL+ S P VGY QGMN + SLL V+ DEEE FWV +++R +SP + + R
Sbjct: 1055 PGLFHELLSSHE-----------GEVNISLEEIEKDVRRTMPLNVFFGGDGVGVGKLRRVLQAYSWRNPAVGYCQGMNLITSSLLLVYADEEEAFWVLTSIIERLLPADFFSPSLLVSR 1162
BLAST of mRNA_H-elongata_contig52838.12604.1 vs. uniprot
Match: A0A167R413_CALVF (TBC-domain-containing protein n=1 Tax=Calocera viscosa (strain TUFC12733) TaxID=1330018 RepID=A0A167R413_CALVF) HSP 1 Score: 67.0 bits (162), Expect = 1.610e-10 Identity = 41/119 (34.45%), Postives = 59/119 (49.58%), Query Frame = 1
Query: 13 PGLYAALLNSADAMDANDITGVRGPKQSCFVDIEKDLKRTLGMK--------DVLPLKNVLRCMSTFVPDVGYVQGMNFVCRSLLQVFDDEEEVFWVFVGMLQRFGLRRLYSPGMPLLR 345
PGL+ LL+S + G +IEKD++RT+ + V L+ VL+ S P VGY QGMN + SLL V+ DEEE FW+ +L+R +SP + + R
Sbjct: 1007 PGLFHELLSSHE-----------GEINVSLEEIEKDVRRTMPLNVFFGGDGVGVGKLRRVLQAYSWRNPSVGYCQGMNLITSSLLLVYADEEEAFWMLTSILERLLPADFFSPSLLVSR 1114
BLAST of mRNA_H-elongata_contig52838.12604.1 vs. uniprot
Match: K3WGG4_GLOUD (Rab-GAP TBC domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WGG4_GLOUD) HSP 1 Score: 66.6 bits (161), Expect = 1.830e-10 Identity = 28/63 (44.44%), Postives = 44/63 (69.84%), Query Frame = 1
Query: 157 LKNVLRCMSTFVPDVGYVQGMNFVCRSLLQVFDDEEEVFWVFVGMLQRFGLRRLYSPGMPLLR 345
++ +LR T+ P VGY QGMNF+ R L++V ++E +VFW+FVG+ + R LY PG+ +L+
Sbjct: 191 IRRILRAYVTYNPRVGYCQGMNFLVRVLIEVTENEADVFWLFVGLSEPEINRNLYEPGLVVLQ 253
BLAST of mRNA_H-elongata_contig52838.12604.1 vs. uniprot
Match: A0A4Y9Z4U0_9AGAM (Rab-GAP TBC domain-containing protein n=1 Tax=Dentipellis fragilis TaxID=205917 RepID=A0A4Y9Z4U0_9AGAM) HSP 1 Score: 66.2 bits (160), Expect = 3.030e-10 Identity = 42/117 (35.90%), Postives = 57/117 (48.72%), Query Frame = 1
Query: 7 RVPGLYAALLNSADAMDANDITGVRGPKQSCFVDIEKDLKRTLGMK--------DVLPLKNVLRCMSTFVPDVGYVQGMNFVCRSLLQVFDDEEEVFWVFVGMLQRFGLRRLYSPGM 333
R PGL+ LL A+A G G +IEKD+ RT+ + V L+ VL S P VGY QGMN V +LL V+ DEE+ FWV +++R +SP +
Sbjct: 1291 REPGLFTDLLAEAEAEAKAHREG--GGDGGVVREIEKDVGRTMPLNVFFGGDGAGVEKLRRVLVAYSRRNPAVGYCQGMNLVASTLLLVYADEEDAFWVLAAIIERILPEDFFSPSL 1405 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig52838.12604.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig52838.12604.1 >prot_H-elongata_contig52838.12604.1 ID=prot_H-elongata_contig52838.12604.1|Name=mRNA_H-elongata_contig52838.12604.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=118bp VQRVPGLYAALLNSADAMDANDITGVRGPKQSCFVDIEKDLKRTLGMKDVback to top mRNA from alignment at H-elongata_contig52838:273..1651- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig52838.12604.1 ID=mRNA_H-elongata_contig52838.12604.1|Name=mRNA_H-elongata_contig52838.12604.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1379bp|location=Sequence derived from alignment at H-elongata_contig52838:273..1651- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig52838:273..1651- >mRNA_H-elongata_contig52838.12604.1 ID=mRNA_H-elongata_contig52838.12604.1|Name=mRNA_H-elongata_contig52838.12604.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=708bp|location=Sequence derived from alignment at H-elongata_contig52838:273..1651- (Himanthalia elongata Himel1 dioecious)back to top |